mRNA_Ecto-sp13_S_contig141.3202.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig141.3202.1 vs. uniprot
Match: D8LET6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LET6_ECTSI) HSP 1 Score: 2797 bits (7251), Expect = 0.000e+0 Identity = 1507/1676 (89.92%), Postives = 1549/1676 (92.42%), Query Frame = 1
Query: 148 MAFRRVRRRYIDTRKNSNIKSIIEELLEAIKGNGMTIRTWFEIMDQLSNNNMINQSEFSKGMEMLQNHSTERMKQPVLSAEQIQELFVYMDANHDGILVLNEVALACKVEHFKTTSSQEMDAITSMMQALDDYMGVHYMKIRDLFVHLDRDKSDGLSRAEIRCGFHAIQAEAKRKQEAAVRRKQKEAVKKAIREDEARIAEAKREEMDRLVYKQRRLSMAGEAAWIPAPLMSQHDPWVTEENGLSYKAARGRAPAQALIVYFRSYKPDDGPVYGVIMHPREFLGNVNMRVTLLFKYNDDKYAGLARILHPTGGAFEAAHASSAASVSKPELRYIETDSEWRDVIGRQFASKSEARLHHVSKWIRDQLATLSAAEGKEARISASAVEGSLGEVMEFVNNPDNLWAVTRDMLETIVSHIRAPRSDSDEAPVLAATILWKLSEYEDFVLPLLGADAAGKCAAAIEELGPPRAGPLQYWLQVSVQTRVTGVLCRIGCATSVDGPVRLRVASALIAVVARPRGPLEARKDYREGADGKMLSFASFALGNLVATSTSIRGSIAHRSSLFDALVSALRPATGGAGGARGGKSVGGVLGGSPLQAVACAAFCLAHVTTGESAPLLTRGKILSACLTLSGLLDVCVNQVEAGVGDSGSDRGATDGSASEVLPITALNGDAAAAAAGRGERGSLSVTMVMESAGKALWGCLSHLSDSTNGDDSTSRSIRDSSSCEGSVGSPDRTELSSGGISGGASVDSGCQAPDLKGKEQGALSATGIPSGNAEGGFSVCGGDDSITDRPSMSPCDILSKCALTLLGLLSQTAKHHAYRRSSVGVESTGNDPNCKRISSSGRTGSASSNDVSRNIDLSETTGKSNSNGGNSSIGGVPHSIVAIAGSCLSRVAQDIDLAAGPPGAMESVLALLLPSAGLLVREQAALTLSAIAGQGFQTLSDFRMEKPAVATAARWSCGGGGNYSERNGGSDDAARWPGPGEGGRERKRLLLWGRFCAGVVEGTGAQIILDCALPGPSARPNSRLLRERAALAFSLVCLCAGLRPASSVVQGGIVSLLRCRDGEVVGGAASAALWALCRVPVNRKAFAKARVVSCLMPLSEWSREKGY---------SSVHTYCLAAL-----YLLSQ--EPKNALQITNHGAGIAKLVSWATPMNGDHDCEDLLLMITVEDNAKTASCLGVIRSRCLMLPEGMKALADGLASYSLIQLVLQLLRVGVWVKSVLPLTLREAQGVLFAVQDRAEYRGYCESICGGDPFGVEDTLALQLQRPGVKYAALAGDAVVGLASLSVTLASRRRLAVNGTVESVGRLLARSMATERGGGREKGSKGDREAVRNMAKLLKNLSSVPEAHRRLSNRPLLPLITRLWEESPDEATSQLACHVLANLSRSDVPGVRNRLFQLHLAAESEVVRRTRASGGAGTSPAPIAKQKPSATVPRQGFASSSTATGAQQGDTNIRDDDTVSLSSSVFRRDGFVEGHCFKGNGCTSDAKSAAVLLSQEAIRRDARRDAQYRLRLMPAALWGSRARHVDDGCNG-EDGLDVAGIVEKQRTRQTLLIDGFDEASGAVPVESAT--STLNAKHDRHQAKRDGSCPSKQKIGGATAVVMQSSVGDSDDGGGDGIVFQGTANVSQAASLKRPAVTANVPLRWQSRVVALSSLRDSLTGGA 5118
MAFRRVRRRYID RKNSNIKSI+EELL AI+GNGMTIRTWFEIMDQLSNNNMINQSEFSKGMEMLQNHSTERMKQPVLSAEQIQELFVYMDANHDGILVLNEVALACKVEH+KTTSSQEMDAITSMMQALDDYMGVHYMKIRDLFVHLDRDKSDGLSRAEIRCGFHAIQAEAKRKQEAAV AIREDEARIAEAKREEMDRLVYKQRRLSMAGEAAWI APL SQHDPWVTEENGL YKAARGRAPAQALIVYFRSYKPDDGPVYGVIMHPREFLGNV MRVTLLFKYNDDKYAG ARILHPTGGAFEAA+ASSAA VSKPELRYIETDSEWRDVIGRQFASKSEARLHH+SKWIRDQLATLSAAE KE R+SASAV+ SLGEVMEFVNNPDNLWAVTR+MLETIVS+IRAP+S+SDEAPVLAATILWKLSEYEDFVLPLL ADAAGKCAAAIEELGPPRAGPLQYWLQVSVQTRVTGVLCRIGCA SVDGPVRLRVASALIAVVARPRGPLEARKDYREGADGK+LSFASFALGNLVATSTSIRGSIAHRSSLFDALVSALRPATGGAGGAR G+SVGGVLGGSPLQAVACAAFCLAHVTTGESAPLLTRGKILSACLTLSGLLDVCV+Q+EAGVGDS S RGATDGSASEV PIT N DAA AAA GE G+LSVTMVMESAGKALWGCLSHLSDSTNGDDSTSRSIRDSSSCEGSVGSPDRTELSSGGISGGASVDSGCQAPDLKG EQGALSA GIPSGNAEGG S+CGGDDSITDRPSMSP ILSKCALTLLGLLSQ AKHHA+RRSSVGVESTGNDPNCKR+S SGRTGS SS VS NID SETTGKSNSNGGNSSIGGVPHSIVAIAGSCLSRVAQDIDLAAGPPGAMESVLALLLPSAGLLVR+QAALTLSAIAGQGFQTLSDFR EK AVA AARWSCG DDAA+WPG GEGGRERKRLLLWG FCAGVVEGTGAQIILDCALPGPS+RPNSRLLRERAALAFSLVCLCAGLRPASS VQGGIVSLLRCRDGEVVGGAA+AALWALCRVPVNRKAFAK R L+ L+ +R + V ++C L Y +S EP+NALQITNHG IAKLVSWATP+NGDH+ EDL MITVEDNAKTASCLGVIR RCL+LPEGMKALADGLASYSLIQLVLQLLRVGVWVKSVLPLTLREAQGVLFAVQDRAEYRGYCESICGGDPFGVEDTLALQLQRPGVKYAALAGDAVVGLASLSVTLASRRRLAVNGTVESV RLLARSMA E GGGREKGSKGD EAVRNMAKLLKNLSSVPEAHRRLSNRPLLPLITRLWEESPDEATSQLACHVLANLSRSDVPGVRNRLFQLHLAAESEVVRRTRASGGAGT+PAPIAKQKPSA VPRQGFA+SSTAT AQ G+TN RDDDTVSLSSSVFRRDGFVEGH +KGNGCTSDAKSAAVLLSQEA+RRDARRDAQYRLRLMPAALWGSRARHVDDGC+G EDGLDVAGIVEKQRTRQT L G DEASGAV VESAT STLNA+HDRHQAKRDGSCPSKQKIGGA AVV+Q SVGD DDGGGDGIVFQGTA VSQAASLKRPAVTANVPLRWQSRVVALSSLRDSL GGA
Sbjct: 1 MAFRRVRRRYIDARKNSNIKSIVEELLGAIEGNGMTIRTWFEIMDQLSNNNMINQSEFSKGMEMLQNHSTERMKQPVLSAEQIQELFVYMDANHDGILVLNEVALACKVEHYKTTSSQEMDAITSMMQALDDYMGVHYMKIRDLFVHLDRDKSDGLSRAEIRCGFHAIQAEAKRKQEAAVXXXXXXXXXXAIREDEARIAEAKREEMDRLVYKQRRLSMAGEAAWILAPLTSQHDPWVTEENGLLYKAARGRAPAQALIVYFRSYKPDDGPVYGVIMHPREFLGNVTMRVTLLFKYNDDKYAGPARILHPTGGAFEAANASSAAFVSKPELRYIETDSEWRDVIGRQFASKSEARLHHISKWIRDQLATLSAAEEKEPRVSASAVKESLGEVMEFVNNPDNLWAVTREMLETIVSYIRAPQSESDEAPVLAATILWKLSEYEDFVLPLLRADAAGKCAAAIEELGPPRAGPLQYWLQVSVQTRVTGVLCRIGCAASVDGPVRLRVASALIAVVARPRGPLEARKDYREGADGKILSFASFALGNLVATSTSIRGSIAHRSSLFDALVSALRPATGGAGGARXGRSVGGVLGGSPLQAVACAAFCLAHVTTGESAPLLTRGKILSACLTLSGLLDVCVDQLEAGVGDSSSARGATDGSASEVFPITVPNDDAAGAAAATGESGTLSVTMVMESAGKALWGCLSHLSDSTNGDDSTSRSIRDSSSCEGSVGSPDRTELSSGGISGGASVDSGCQAPDLKGNEQGALSAAGIPSGNAEGGVSICGGDDSITDRPSMSPRHILSKCALTLLGLLSQVAKHHAHRRSSVGVESTGNDPNCKRMSRSGRTGSTSSTKVSSNIDHSETTGKSNSNGGNSSIGGVPHSIVAIAGSCLSRVAQDIDLAAGPPGAMESVLALLLPSAGLLVRQQAALTLSAIAGQGFQTLSDFRTEKAAVAAAARWSCGXXXXXXXXXXXXDDAAQWPGQGEGGRERKRLLLWGTFCAGVVEGTGAQIILDCALPGPSSRPNSRLLRERAALAFSLVCLCAGLRPASSAVQGGIVSLLRCRDGEVVGGAATAALWALCRVPVNRKAFAKTRCFDYLL-LTSITRSRALVCCTLSENEGVVTSFCSKRLQKRQIYPISLLVEPENALQITNHGGSIAKLVSWATPLNGDHNSEDLSRMITVEDNAKTASCLGVIR-RCLLLPEGMKALADGLASYSLIQLVLQLLRVGVWVKSVLPLTLREAQGVLFAVQDRAEYRGYCESICGGDPFGVEDTLALQLQRPGVKYAALAGDAVVGLASLSVTLASRRRLAVNGTVESVDRLLARSMAIESGGGREKGSKGDHEAVRNMAKLLKNLSSVPEAHRRLSNRPLLPLITRLWEESPDEATSQLACHVLANLSRSDVPGVRNRLFQLHLAAESEVVRRTRASGGAGTTPAPIAKQKPSAAVPRQGFAASSTATRAQHGETNSRDDDTVSLSSSVFRRDGFVEGHRYKGNGCTSDAKSAAVLLSQEALRRDARRDAQYRLRLMPAALWGSRARHVDDGCSGGEDGLDVAGIVEKQRTRQTFLTAGLDEASGAVAVESATVTSTLNARHDRHQAKRDGSCPSKQKIGGAAAVVVQPSVGDFDDGGGDGIVFQGTAKVSQAASLKRPAVTANVPLRWQSRVVALSSLRDSLNGGA 1674 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig141.3202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig141.3202.1 >prot_Ecto-sp13_S_contig141.3202.1 ID=prot_Ecto-sp13_S_contig141.3202.1|Name=mRNA_Ecto-sp13_S_contig141.3202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1706bp MLDVISFTTANVDLLVDFLDGIQVEFGSNARRDGIVCLKLSLVIEQELEMback to top mRNA from alignment at Ecto-sp13_S_contig141:16321..36787+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig141.3202.1 ID=mRNA_Ecto-sp13_S_contig141.3202.1|Name=mRNA_Ecto-sp13_S_contig141.3202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=20467bp|location=Sequence derived from alignment at Ecto-sp13_S_contig141:16321..36787+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig141:16321..36787+ >mRNA_Ecto-sp13_S_contig141.3202.1 ID=mRNA_Ecto-sp13_S_contig141.3202.1|Name=mRNA_Ecto-sp13_S_contig141.3202.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=5118bp|location=Sequence derived from alignment at Ecto-sp13_S_contig141:16321..36787+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |