mRNA_Ecto-sp13_S_contig10320.320.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10320.320.1
Unique NamemRNA_Ecto-sp13_S_contig10320.320.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A6H5J9E8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E8_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 1.200e-75
Identity = 134/153 (87.58%), Postives = 140/153 (91.50%), Query Frame = 1 
Query:  454 PPLEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRPVGSGGAVQDQANVAGLKRRREQGEGVGVG 912
            P L +L      +   AARALG+SLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVL+KDIVEQSGRP+G+GGA QDQANVAGLKRRREQGE VGVG
Sbjct:   11 PSLSSLAHGALGANNTAARALGVSLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLVKDIVEQSGRPIGAGGAGQDQANVAGLKRRREQGEEVGVG 163
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: D8LRL6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL6_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 3.420e-73
Identity = 123/128 (96.09%), Postives = 126/128 (98.44%), Query Frame = 1 
Query:  502 AARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRPVGSGGAVQDQANVAGLKRRR 885
            AARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTI SLKNALEKCDS+IERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRP+G+GGA QDQANVAGLKRRR
Sbjct:   60 AARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIHSLKNALEKCDSDIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPESICDVLIKDIVEQSGRPIGAGGAGQDQANVAGLKRRR 187
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A835Z7T4_9STRA (RWP-RK domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.970e-15
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1 
Query:  457 PLEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKP 771
            P+  L+E YH+ L  AAR L +SL  LK+ CRQYGI RWP+RQV S+  ++  L+  +     +   A+L+ +   L  K  L+ K AS GL   + N +F+++P
Sbjct:   14 PVSVLEEFYHVPLNIAARELSVSLTMLKKLCRQYGIKRWPHRQVSSLNKSLGKLEEKILGASDDKAAAALRAKAGPLRTKRELIIKTASAGLDPDVLNAVFAARP 118
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: L1JI00_GUITC (RWP-RK domain-containing protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JI00_GUITC)

HSP 1 Score: 62.4 bits (150), Expect = 1.020e-8
Identity = 24/76 (31.58%), Postives = 52/76 (68.42%), Query Frame = 1 
Query:  463 EALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESLI 690
            E L +++H+S+ +AA ALG+ ++ +K+ CR++GI RWP+R++ S+  T+  L++ +   + +  RA+L+    +++
Sbjct:   22 EELAQYFHISINEAAEALGMCMSAIKKICRRHGISRWPHRKLASVNKTVAMLQSKINTAEDDASRAALRSEAVNVL 97
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A453CMP2_AEGTS (RWP-RK domain-containing protein n=2 Tax=Triticeae TaxID=147389 RepID=A0A453CMP2_AEGTS)

HSP 1 Score: 62.0 bits (149), Expect = 4.330e-8
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  460 LEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLK------------DRLESLIKKESLV 708
            L  + +++H+ + +A+R L I L+ LK+ CRQYGIPRWP+R+++S+ S I  L+  +   D E ER  +K            D +E+L K++ ++
Sbjct:   33 LNDIAQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSLDSLIHDLEYVI---DDETERDGVKQEDHMQDEKENQDAIEALAKRKRML 124
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: M8B5K3_AEGTA (RWP-RK domain-containing protein n=3 Tax=Triticinae TaxID=1648030 RepID=M8B5K3_AEGTA)

HSP 1 Score: 62.0 bits (149), Expect = 4.410e-8
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  460 LEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLK------------DRLESLIKKESLV 708
            L  + +++H+ + +A+R L I L+ LK+ CRQYGIPRWP+R+++S+ S I  L+  +   D E ER  +K            D +E+L K++ ++
Sbjct:   34 LNDIAQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSLDSLIHDLEYVI---DDETERDGVKQEDHMQDEKENQDAIEALAKRKRML 125
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A7S0HHE9_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HHE9_9CRYP)

HSP 1 Score: 61.6 bits (148), Expect = 5.600e-8
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:  469 LQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLKDRLESL 687
            L +  H+  +  A+ LGI +  LK+ACRQYGI RWP+R+++SI   +  L+ AL  CD + ER  L+++  +L
Sbjct:   15 LVQLLHLPEKIVAKELGICVTSLKKACRQYGIYRWPHRKIKSIDKNLHKLEVALATCDKQEERVHLEEKKAAL 87
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: K3YEI3_SETIT (RWP-RK domain-containing protein n=2 Tax=Setaria TaxID=4554 RepID=K3YEI3_SETIT)

HSP 1 Score: 61.2 bits (147), Expect = 6.300e-8
Identity = 26/61 (42.62%), Postives = 44/61 (72.13%), Query Frame = 1 
Query:  448 DSPPLEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNAL 630
            DS  L  + +++H+ +++A++AL I ++ LK  CRQYGIPRWP+R+++S+ S I  L+  L
Sbjct:   22 DSITLVNIAQYFHLPIKEASKALKIGVSALKTKCRQYGIPRWPHRKIKSLDSLIHDLEYVL 82
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A3B6B318_WHEAT (RWP-RK domain-containing protein n=12 Tax=Triticeae TaxID=147389 RepID=A0A3B6B318_WHEAT)

HSP 1 Score: 63.5 bits (153), Expect = 8.680e-8
Identity = 34/95 (35.79%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:  460 LEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLK------------DRLESLIKKESLV 708
            LE + +++H+ + +A+R L I L+ LK+ CRQYGIPRWP+R+++S+ S I  L+  +   D E ER  +K            D +E+L K++ ++
Sbjct:  207 LEDITQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSLDSLIHDLEFVI---DDETERDGVKQEDHMQDEKENQDAIEALAKRKRML 298
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Match: A0A453CMI2_AEGTS (RWP-RK domain-containing protein n=2 Tax=Triticinae TaxID=1648030 RepID=A0A453CMI2_AEGTS)

HSP 1 Score: 62.0 bits (149), Expect = 8.940e-8
Identity = 33/95 (34.74%), Postives = 57/95 (60.00%), Query Frame = 1 
Query:  460 LEALQEHYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNALEKCDSEIERASLK------------DRLESLIKKESLV 708
            L  + +++H+ + +A+R L I L+ LK+ CRQYGIPRWP+R+++S+ S I  L+  +   D E ER  +K            D +E+L K++ ++
Sbjct:   76 LNDIAQYFHLPIREASRTLKIGLSILKKKCRQYGIPRWPHRKLKSLDSLIHDLEYVI---DDETERDGVKQEDHMQDEKENQDAIEALAKRKRML 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10320.320.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J9E8_9PHAE1.200e-7587.58RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LRL6_ECTSI3.420e-7396.09Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A835Z7T4_9STRA3.970e-1539.05RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
L1JI00_GUITC1.020e-831.58RWP-RK domain-containing protein (Fragment) n=1 Ta... [more]
A0A453CMP2_AEGTS4.330e-834.74RWP-RK domain-containing protein n=2 Tax=Triticeae... [more]
M8B5K3_AEGTA4.410e-834.74RWP-RK domain-containing protein n=3 Tax=Triticina... [more]
A0A7S0HHE9_9CRYP5.600e-841.10Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
K3YEI3_SETIT6.300e-842.62RWP-RK domain-containing protein n=2 Tax=Setaria T... [more]
A0A3B6B318_WHEAT8.680e-835.79RWP-RK domain-containing protein n=12 Tax=Triticea... [more]
A0A453CMI2_AEGTS8.940e-834.74RWP-RK domain-containing protein n=2 Tax=Triticina... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10320contigEcto-sp13_S_contig10320:1885..3972 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score82.8
Seed ortholog evalue2.9e-13
Seed eggNOG ortholog2880.D8LTZ5
Model size913
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.RWP-RK domain
EggNOG OGs2E5A6@1,2SC46@2759
Cds size885
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462523.1358666-CDS-Ecto-sp13_S_contig10320:1884..20691681462523.1358666-CDS-Ecto-sp13_S_contig10320:1884..2069Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10320 1885..2069 -
1681462523.1451437-CDS-Ecto-sp13_S_contig10320:2504..27291681462523.1451437-CDS-Ecto-sp13_S_contig10320:2504..2729Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10320 2505..2729 -
1681462523.1531265-CDS-Ecto-sp13_S_contig10320:3470..39451681462523.1531265-CDS-Ecto-sp13_S_contig10320:3470..3945Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10320 3471..3945 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462523.1610365-UTR-Ecto-sp13_S_contig10320:3945..39721681462523.1610365-UTR-Ecto-sp13_S_contig10320:3945..3972Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10320 3946..3972 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10320.320.1prot_Ecto-sp13_S_contig10320.320.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10320 1885..3945 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10320.320.1

>prot_Ecto-sp13_S_contig10320.320.1 ID=prot_Ecto-sp13_S_contig10320.320.1|Name=mRNA_Ecto-sp13_S_contig10320.320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=295bp
MGDIGTSTSGLPWDGSSQQQLRPPSSSQQQQQQQQLQHMQQQQQRMQQQQ
HHMQQRHMQSAMIYQPQQQQLRQHLQPPHQVPLQIGAAVTNASSSGGAGE
IRSAPEPSTTLSPAGIRGAPASKIGQAKSLGGGVGGEASDDSPPLEALQE
HYHMSLEQAARALGISLNKLKRACRQYGIPRWPYRQVRSIRSTIQSLKNA
LEKCDSEIERASLKDRLESLIKKESLVCKFASCGLTGPLRNMLFSSKPES
ICDVLIKDIVEQSGRPVGSGGAVQDQANVAGLKRRREQGEGVGVG
back to top

mRNA from alignment at Ecto-sp13_S_contig10320:1885..3972-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10320.320.1 ID=mRNA_Ecto-sp13_S_contig10320.320.1|Name=mRNA_Ecto-sp13_S_contig10320.320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2088bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10320:1885..3972- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGAGGAGGTGAGACCCACGCCAACATGGGGGATATCGGCACGAGTAC
AAGCGGCTTGCCATGGGATGGTTCCTCTCAGCAACAACTTCGGCCGCCGT
CATCTTCGCAGCAGCAGCAGCAGCAGCAGCAGCTGCAGCACATGCAACAA
CAGCAACAACGCATGCAACAACAGCAACATCACATGCAGCAACGGCACAT
GCAATCAGCGATGATCTACCAGCCGCAACAGCAGCAGCTACGGCAGCACC
TCCAGCCGCCACACCAGGTTCCCCTCCAGATCGGTGCTGCCGTCACCAAC
GCGAGCAGCAGCGGCGGGGCCGGCGAAATTCGTTCAGCACCGGAGCCATC
CACAACCCTTAGTCCTGCAGGCATTCGAGGCGCTCCGGCTAGCAAAATCG
GGCAGGCGAAGTCACTCGGCGGGGGGGTCGGCGGAGAGGCGTCGGATGAC
AGCCCCCCCCTGGAAGCCCTACAGGAGCATTATCACATGTCGCTTGAGCA
AGGCAAGTCCAACAGGCTGAACATGAATTGGTTCGCTCCCCCTCGTACTC
ATCCGAAGGAGTGCCGTGGCGAGTCTTTTTTTTTTTTCAATTTGGCCCTT
TTTTCTCTTTTCGGTAGGATGGGGGGAATCTTATTCCGCTCGTGCGTCTC
CTCTTTCCTTTGTCGCTACGAACGGAGGAGGAGATGAAGTACGTCATATG
TCTTCTGCCGTCCTTTATGCACCCGTGGGTGTAAACGTAGACGATGTCGG
TGATCCGGGAGGGAATTAGGCACTCCTGAGGCCGCCCTGTACCTTTTGGC
GTGAGCCTGCCTGCAGCACCTCGTTTGGCTACAGCACCTTCCGAGGGGCG
CTTGCTTTGTTAAATTGCTTGTCAAGTACAGGTCGTTCATTGTACAGCAG
TGCTGTACCTTATTTTGGCTTGGGACTTGTGATAACTGGGAATACTCTTT
CGTCGAAGCCTACTTCAAGGTTGTAGGGGGACAGGACGTACTGGGTGTAG
GGCAGGAACGTACTGTATGCATGCTATCAGTGAGACGACAACAACACCAA
CTCGTTCAGTTGGATACTTGGGGTCGGATTTGCGGTGGGTGGCCTTGCCT
GATTCGGAGTTGTCTGTACTTCCTTCCTTCCTCGTCCTCTTCTTCCCGCT
CCTCCTCCTTGTGTCTTATCTGTTTTTTCCCTCCGTCCCTCCTTCCCTCC
CCCTCCTCCCTTGCTCATGGTGCGCTTGGTGCGAACAACACAGCCGCACG
CGCTCTGGGTATCTCGCTGAACAAGCTGAAGCGAGCCTGCCGTCAGTACG
GTATCCCGCGCTGGCCGTACCGGCAGGTTCGGAGCATTCGAAGCACCATC
CAGAGCCTCAAGAATGCCCTCGAGAAGTGCGACAGCGAGATCGAACGAGC
CAGCCTCAAGGACAGGCTCGAGTCTCTCATTAAGAAGGAGAGCCTGGTGT
GCAAGTTCGCCAGCTGCGGTGAGCATTGAGGGAGAGCGTGGGTTGGCATC
GAGAGAGGAGGGATTGTAGTTGGAGGTTTCACCTTTTGTAGTACTGCAGT
GACGATTACGATTGCCTCATTTGCCATGTACGCTGTGTGTGGTGTTGTCG
ACCTTATGTGATGATATGGTACTGTACCCCCCCTGTTCGGCTTGTAGAGC
TTGTGTGTCTTGTTCTTTTCGCGATGTATCTAGAGTACTGCCCGTGTCGT
ACTCACGACCATGGCTTGCCGCGTCCCCTAAAATATATTTTGTCCATCAC
ACTACATTGCTCCACGAATGTATTCGAAAACGATGAGTTTGAGGCGCTCC
ACTGGTACATGTACGCACCACAAGCATGCTATCCGCCCGCGTTCCCATGT
CCACAAGTCGAGGTATTGCTGACCCTCTTGACCCGTCTTCTCTTCCGCCG
CAGGCCTCACTGGACCTCTTCGAAACATGCTCTTCAGCTCCAAGCCGGAA
AGCATCTGCGACGTACTGATCAAGGACATCGTGGAGCAGTCGGGGCGACC
CGTTGGCTCCGGGGGAGCTGTCCAAGACCAAGCTAACGTGGCGGGGTTGA
AGCGCAGGAGAGAGCAGGGAGAAGGAGTGGGGGTGGGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10320:1885..3972-

>mRNA_Ecto-sp13_S_contig10320.320.1 ID=mRNA_Ecto-sp13_S_contig10320.320.1|Name=mRNA_Ecto-sp13_S_contig10320.320.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=885bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10320:1885..3972- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGGATATCGGCACGAGTACAAGCGGCTTGCCATGGGATGGTTCCTC
TCAGCAACAACTTCGGCCGCCGTCATCTTCGCAGCAGCAGCAGCAGCAGC
AGCAGCTGCAGCACATGCAACAACAGCAACAACGCATGCAACAACAGCAA
CATCACATGCAGCAACGGCACATGCAATCAGCGATGATCTACCAGCCGCA
ACAGCAGCAGCTACGGCAGCACCTCCAGCCGCCACACCAGGTTCCCCTCC
AGATCGGTGCTGCCGTCACCAACGCGAGCAGCAGCGGCGGGGCCGGCGAA
ATTCGTTCAGCACCGGAGCCATCCACAACCCTTAGTCCTGCAGGCATTCG
AGGCGCTCCGGCTAGCAAAATCGGGCAGGCGAAGTCACTCGGCGGGGGGG
TCGGCGGAGAGGCGTCGGATGACAGCCCCCCCCTGGAAGCCCTACAGGAG
CATTATCACATGTCGCTTGAGCAAGCCGCACGCGCTCTGGGTATCTCGCT
GAACAAGCTGAAGCGAGCCTGCCGTCAGTACGGTATCCCGCGCTGGCCGT
ACCGGCAGGTTCGGAGCATTCGAAGCACCATCCAGAGCCTCAAGAATGCC
CTCGAGAAGTGCGACAGCGAGATCGAACGAGCCAGCCTCAAGGACAGGCT
CGAGTCTCTCATTAAGAAGGAGAGCCTGGTGTGCAAGTTCGCCAGCTGCG
GCCTCACTGGACCTCTTCGAAACATGCTCTTCAGCTCCAAGCCGGAAAGC
ATCTGCGACGTACTGATCAAGGACATCGTGGAGCAGTCGGGGCGACCCGT
TGGCTCCGGGGGAGCTGTCCAAGACCAAGCTAACGTGGCGGGGTTGAAGC
GCAGGAGAGAGCAGGGAGAAGGAGTGGGGGTGGGG
back to top