mRNA_Ecto-sp13_S_contig14093.3199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: D7FQR2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQR2_ECTSI) HSP 1 Score: 570 bits (1469), Expect = 2.020e-196 Identity = 307/347 (88.47%), Postives = 317/347 (91.35%), Query Frame = 1
Query: 1 HCFLPLAE*DQQQIAMQVLVRDDLADALIQTASSTLRNAATSNANQDASSDGVA-PMTDFTSATKSSFPSTWSPGSSIQLMPPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCTKCNGLTFIDASALRTILELTSLGDFGKVRTENLPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIGETKLHSD**DEKC*REKPSW*GASRR 1038
HCFLPLAE DQ QIAMQVLV DDLADALIQTASSTLRNAATSNANQDASSD VA T+ TSATKSSFPSTWSPGSSIQL+PPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCT+CNG+TFIDASALRTILEL SL DFGKVR ENLPPCVGCG+TAGLRVGAHDFLSLI+GGKEALARRRRLERIAAKMLQRAFRRHLHIQWRK+EIVRQ TIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRI+VEQNIREI L + E R + W G S R
Sbjct: 2 HCFLPLAEQDQYQIAMQVLVGDDLADALIQTASSTLRNAATSNANQDASSDDVARTTTNGTSATKSSFPSTWSPGSSIQLIPPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCTQCNGMTFIDASALRTILELKSLVDFGKVRPENLPPCVGCGETAGLRVGAHDFLSLIQGGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKSEIVRQRTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRIVVEQNIREIATRVLERE--AELVGRIQARWRGLSVR 346
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: A0A836CFY4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFY4_9STRA) HSP 1 Score: 160 bits (404), Expect = 2.060e-38 Identity = 121/355 (34.08%), Postives = 158/355 (44.51%), Query Frame = 1
Query: 229 IQLMPPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCTKCNGLTFIDASALRTILELTSLGD-----------------------------------------------------------------------------------------------------------FGKVRTENLPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIGETKL 972
+QL+PP+ +D TD+SL RRA FD G+ +RGLRR LFY SG+++C CN +TF+DA+ALRT + L G E LP C GCG TA LRVG DF I G LA+R R AA ++QRA+R +L ++ +A VR T LL YR A+ +QA++RGRLGRRV T++ LRV+ H ++ AL P R+R+FWY +AE+ L+ADY LV RTGFRPPR LVE NI E+ L
Sbjct: 16 VQLVPPQQNDCTDQSLPRRAE-GAFDACGFAERRGLRRSLFYVSGFVTCAACNAVTFVDAAALRTAMHLRGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIPASSDAGAVAAVGGSATAGRPQSPRHSRQQPALNAAPAAAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXLGAAPAEALPVCSGCGLTATLRVGVRDFTHDIAQGHVDLAQRAARRRGAAAVVQRAYRSYLAVRRDRALRVRLLTKHLLEYRCARAVQAVMRGRLGRRVARTQRHLRVLAGCHPAVLHWALHGCPERRRLFWYHIKAEQDLLFADYVALVERTGFRPPRGLVEANIAELAARAL 369
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: A0A7S2R5D9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5D9_9STRA) HSP 1 Score: 156 bits (394), Expect = 3.190e-37 Identity = 93/248 (37.50%), Postives = 145/248 (58.47%), Query Frame = 1
Query: 217 PGSSIQLMPPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCTKCNGLTFIDASALRTILELTSLGDFGKVRTENLPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIG 960
P S++ PP+++ RS + A FD G+ GL++ LFY S +L+C+KCN + ID+ R+ L R E LP C CG T VG+HD I +E L R ++ A ++QR++R +L QW +AE R+ +L YR+A +I+A++RGRLGRR +T +R++ +AH L+ A+ +++RVFWYK + + + LY DY +L RTGF+PPR++VE+N++EI
Sbjct: 96 PSSAVAHEPPQMTCLPARS--KAADAIRFDSSGFNTGIGLQKDLFYWSPFLTCSKCNNMAIIDSMNARSFSGLMQTSLAKTARAEPLPKCSVCGSTQDWWVGSHDLTKFIGASREELEALLRRQKKAVVVIQRSYRFYLRRQWGRAERQRKKIRAMLEYRAASIIEALIRGRLGRRKAKTTVSIRIIMRAHSKLVSRAVSDRSYKRRVFWYKPD-QLKILYLDYVVLCERTGFQPPRVVVEENLKEIA 340
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: F0YRG3_AURAN (Expressed protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRG3_AURAN) HSP 1 Score: 149 bits (377), Expect = 3.550e-37 Identity = 110/271 (40.59%), Postives = 155/271 (57.20%), Query Frame = 1
Query: 175 FTSATKS-SFPSTWSPGSSIQLMPPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCTKCNGLTFIDASALRT--------ILELTSLGDFGKVRTENLPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIG 960
FT+ K+ + P++++ GSS+ L+ PKL DT+DRSL D R + L RP+FY + Y++C KCN L FIDA+ +R+ I E+ S GD E L C C TA +GAHDFL I G K L ++ ++ AA +L R++R +L Q +A R+ L+ A +I+A+LRGRLGRR T +L V+KAH + + AL K VFWYK++ + R L+ DY +LV RTGF PPR +VE NI+EI
Sbjct: 34 FTATEKAMALPTSFTRGSSMNLVTPKLVDTSDRSLVETFSKTFRDG---RKESDLERPMFYLTPYITCDKCNTLMFIDAAKVRSFSARMPGGICEV-SAGD------ETLGVCPSCASTANFCLGAHDFLGKIAGSKAELIKQIKIRHAAAFLLGRSYRFYLRRQCARACRTREKVWAYLQRLCAAIIEAVLRGRLGRRKARTCAYLNYVQKAHPISLSKALSLGGEFK-VFWYKSKEQIRLLFNDYLVLVERTGFVPPRYVVEANIQEIA 293
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: A0A8J2X0I4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0I4_9STRA) HSP 1 Score: 137 bits (344), Expect = 1.440e-30 Identity = 101/272 (37.13%), Postives = 144/272 (52.94%), Query Frame = 1
Query: 199 FPSTWSPGSSIQLMPPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCTKCNGLTFIDASALRT----ILELTSLGDFGKVRTENLPPCVGCGQTAGLRVGAHDFLSLIE----GGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHAL----------DHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIG 960
PS+++ S + L+ + DTTDR L + A F P +R +++PLFY + +++C+KCN + FIDA+ R + E L G E L C GC T L VGAHDF+ IE G +EA+A+ + + AA +L +R +L Q +A RQ L +R A ++++ RGRLGRR T + LR +K H + +K AL K+VFWY + + LY DY +L RTGF PPRI+VEQNI EI
Sbjct: 41 LPSSFTRDSEMHLVDQHMIDTTDRHLVK-AFCEQFRPGAT--ERDMQKPLFYLTPFITCSKCNSILFIDAANARCFGAPVPESVRLKRGGN---ETLAVCPGCAMTENLEVGAHDFMEDIEDASLGAREAMAKEMKKRKRAASLLIMVYRFYLRRQLARAARTRQKCRYYLYHRCASIVESAARGRLGRRRARTFENLRYIKNRHPISLKKALAQKFEVDKRTGESKRLKKVFWYHTKVQLDCLYRDYFILCQRTGFVPPRIIVEQNIEEIA 306
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: A0A8K1CDF9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CDF9_PYTOL) HSP 1 Score: 94.4 bits (233), Expect = 7.160e-17 Identity = 71/216 (32.87%), Postives = 114/216 (52.78%), Query Frame = 1
Query: 346 LFY---KSGYLSCTKCNGLTFIDASALR---TILELTSLGDFGKVRTENLPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHL-HIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIGETKL 972
LFY K+ YL+C++CN +TFID +R + +L + E +P C GCG T LR G F I ++A+ R A +++QR R + +++R+ ++ + I+ + +SA ++Q +RG RR E+ LR+++ H ++K AL P VFWY N +E + L+ +YR V R+G +PP + VE NI EI L
Sbjct: 40 LFYSDFKTPYLTCSRCNSVTFIDVRRVRPKDAPRDPDALSLY-----EQVPICAGCGTTKYLRAGVVSFQEKIAEEQQAIKEFERKRGPATELIQRIARGFMGRLEYRRRKLAWERYIRKIN-QSATMVQTRVRGMQARRRTILERCLRIIRTLHPSILKFALTARPDCPPVFWYDNPSELQILFWNYREFVRRSGGKPPLVKVETNILEITRRML 249
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: A0A329SZ32_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SZ32_9STRA) HSP 1 Score: 92.8 bits (229), Expect = 2.500e-16 Identity = 68/212 (32.08%), Postives = 105/212 (49.53%), Query Frame = 1
Query: 364 YLSCTKCNGLTFIDASALRTILELTSLGDFGKVRT-----ENLPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHL-HIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIGETKLHSD 981
YL+C +CN +TF+D +R + + G+ E +P C GCG T LR G F IE + A+ R A +LQR R L +++R+ + R+ ++ ++ R+A IQ +RG RR E+ LR+++ ++ +AL P+ VFWY N AE Y +YR V R+G +P I VE N+ EI L +
Sbjct: 62 YLTCQRCNSVTFVDLKRVRRKADQLAAAKVGEGEDTTCLYEQVPKCPGCGSTRYLRAGVVSFQEQIEEERNAIKEFERRRVPATALLQRIARGFLGRMEFRRRLVERERYLRKIK-RAATKIQTRVRGMQARRRTVIERCLRIIRFMAPQILSYALASRPNEPPVFWYSNTAELSVFYWNYREYVRRSGGKPTLIKVENNVLEITRRVLRRE 272
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: H3GJ84_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GJ84_PHYRM) HSP 1 Score: 92.4 bits (228), Expect = 3.210e-16 Identity = 69/207 (33.33%), Postives = 100/207 (48.31%), Query Frame = 1
Query: 364 YLSCTKCNGLTFIDASALRTILELTSLGDFGKVRTENLPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHL-HIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIGETKLHSD 981
YL+C +CN +TFID +R + + E +P C GCG T LR G F IE + A+ R A +LQR R L +++R+ + R ++ + R+A IQ +RG RR E+ LR++ ++ +AL P+ VFWY N AE Y +YR V R+G RP I VE N+ EI L +
Sbjct: 64 YLTCQRCNSVTFIDVLRVRRKADQLGEREDTTFLYEEVPKCPGCGSTRYLRAGVVSFQEQIEEERNAIKEFERRRVPATALLQRIARGFLGRLEFRRRLVARDRYLRKIN-RAATRIQTRVRGMQARRRTVIERCLRIISFMAPQILSYALASRPNEPPVFWYTNTAELSVFYWNYREYVRRSGGRPTLIKVENNVLEITRRVLRRE 269
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: F0Y6T7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6T7_AURAN) HSP 1 Score: 86.7 bits (213), Expect = 5.210e-14 Identity = 82/264 (31.06%), Postives = 117/264 (44.32%), Query Frame = 1
Query: 175 FTSATKS-SFPSTWSPGSSIQLMPPKLSDTTDRSLFRRARLAVFDPHGYRHQRGLRRPLFYKSGYLSCTKCNGLTFIDASALRTILELTSLGDFGKVRTEN--LPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHLHIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREI 957
FT+ K+ + PS+++ SS+ L+ PKL DT+DRSL A F G + L RP+FY + YL+C KCN L FIDA+ R S D K R ++ L C C TA L++GAHDFL I G +HI + + V ++ L L + + + +VFWYK++ + R L+ +Y +L RTGF PPR +VE N+REI
Sbjct: 596 FTAKEKAMALPSSFTRSSSMNLVTPKLVDTSDRSLVE-AFSKTFRSGG--DETDLERPMFYLTPYLTCDKCNSLMFIDAANARNFGARMSR-DTCKRRADDEVLGMCPSCASTANLQLGAHDFLDKIAG--------------------------VHIDFTFSGNVH--------------VRIELEPSLNKALSPGGEI-----------------------KVFWYKSKEQVRLLFENYLVLAERTGFLPPRYVVESNVREI 792
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Match: A0A6A4FWP5_9STRA (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=A0A6A4FWP5_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 5.650e-13 Identity = 69/217 (31.80%), Postives = 104/217 (47.93%), Query Frame = 1
Query: 364 YLSCTKCNGLTFIDASALRTILE-----LTSLGDFGKVRT-----ENLPPCVGCGQTAGLRVGAHDFLSLIEGGKEALARRRRLERIAAKMLQRAFRRHL-HIQWRKAEIVRQHTIQLLRYRSAQVIQAMLRGRLGRRVFETEKWLRVVKKAHRLLIKHALDHYPHRKRVFWYKNEAEERQLYADYRMLVLRTGFRPPRILVEQNIREIGETKLHSD 981
YL+C +CN +TFID +R + + L D + E +P C GCG T LR G F IE + A+ R A +LQR R L +++R+ + R+ ++ + R+A IQ +RG RR E+ LR+++ ++ +AL + VFW+ N AE Y +YR V R+G RP I VE N+ EI L +
Sbjct: 64 YLTCQRCNCVTFIDVQRVRRKADQLAASMQPLNDADEREDTMPLYEQVPKCPGCGSTRYLRAGVVSFQEQIEEERNAIKEFERRRVPATALLQRIARGFLGRLEFRRRLLERERYLRKIN-RAATRIQTRVRGMQARRRSVIERCLRIIRFMAPQILSYALAARANEPPVFWHTNTAELGVFYWNYREYVRRSGGRPTLIKVENNVLEITRRVLRRE 279 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14093.3199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14093.3199.1 >prot_Ecto-sp13_S_contig14093.3199.1 ID=prot_Ecto-sp13_S_contig14093.3199.1|Name=mRNA_Ecto-sp13_S_contig14093.3199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp MKSARERSRAGEAHPGAVEGTERSALLGRVPQGAKETSGAEQNILADYLAback to top mRNA from alignment at Ecto-sp13_S_contig14093:469..3902+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig14093.3199.1 ID=mRNA_Ecto-sp13_S_contig14093.3199.1|Name=mRNA_Ecto-sp13_S_contig14093.3199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3434bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14093:469..3902+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14093:469..3902+ >mRNA_Ecto-sp13_S_contig14093.3199.1 ID=mRNA_Ecto-sp13_S_contig14093.3199.1|Name=mRNA_Ecto-sp13_S_contig14093.3199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14093:469..3902+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |