mRNA_Ecto-sp13_S_contig14088.3195.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14088.3195.1
Unique NamemRNA_Ecto-sp13_S_contig14088.3195.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: D7FXR7_ECTSI (S-adenosyl-methyltransferase MraW n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR7_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 5.170e-34
Identity = 69/80 (86.25%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:  106 VPPRTTSAGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTGDGDSMGERR----VAPTSKEHEDRAVENVGR 333
            VPPRTTSAGPLVDGILVDLGVSSHQIDD ARGFSFSADGPLDMRMEGTGDGDS+GER     VA TS+EHEDRAVE  GR
Sbjct:  108 VPPRTTSAGPLVDGILVDLGVSSHQIDDEARGFSFSADGPLDMRMEGTGDGDSVGERSGFGGVASTSREHEDRAVEKGGR 187
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: A0A6H5J8S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S8_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 8.880e-33
Identity = 69/79 (87.34%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:  109 PPRTTSAGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTGDGDSMGERR----VAPTSKEHEDRAVENVGR 333
            PPRTTSAGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTGDGDS GER     VAPTS +HEDRAVE  GR
Sbjct:  538 PPRTTSAGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTGDGDSAGERSWFGGVAPTSTKHEDRAVEKGGR 616
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: A0A7S3XL64_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XL64_HETAK)

HSP 1 Score: 70.1 bits (170), Expect = 9.180e-12
Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:  127 AGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTGDGDSM 267
            AGP + G+L+DLGVSSHQ+D+GARGFS++A+GPLDMRMEG G G  +
Sbjct:  204 AGPPLAGMLLDLGVSSHQLDEGARGFSYAAEGPLDMRMEGPGGGGGL 250
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: A0A835Z182_9STRA (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z182_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.650e-10
Identity = 31/45 (68.89%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:  112 PRTTSAGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEG 246
            P+ +   P VDG+L+DLGVSSHQ+D  ARGFS+SADGPLDMRM G
Sbjct:  100 PQESMPPPQVDGMLLDLGVSSHQLDSAARGFSYSADGPLDMRMAG 144
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: UPI001AC4F76F (Partial Ribosomal RNA small subunit methyltransferase H n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=UPI001AC4F76F)

HSP 1 Score: 64.3 bits (155), Expect = 1.770e-10
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  127 AGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGT 249
            A P +DG+L+DLGVSS Q+DD ARGFSF ADGPLDMRM+ T
Sbjct:   90 AAPRIDGLLLDLGVSSPQLDDAARGFSFRADGPLDMRMDPT 130
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: RSMH_ALCBS (Ribosomal RNA small subunit methyltransferase H n=7 Tax=Alcanivorax TaxID=59753 RepID=RSMH_ALCBS)

HSP 1 Score: 64.7 bits (156), Expect = 5.670e-10
Identity = 38/83 (45.78%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   25 DPTAVAASPXXXXXXXXXXXXXXXXXXVPPRTTSAGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTGDGDSMGE 273
            DP A+AA                    +P     AG  +DG+L+DLGVSS Q+DD ARGFSF  DGPLDMRM+ T  G+S+ E
Sbjct:   60 DPQAIAAGQQLAASDSRFHMMAGRFDCLPQAVEQAGRPIDGLLLDLGVSSPQLDDAARGFSFLRDGPLDMRMDPT-QGESVAE 141
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: A0A316P6P4_9FIRM (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A316P6P4_9FIRM)

HSP 1 Score: 64.3 bits (155), Expect = 7.810e-10
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:  133 PLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTG 252
            P VDGIL+D+GVSSHQ+D GARGFSF AD PLDMRM  +G
Sbjct:   92 PAVDGILLDIGVSSHQLDTGARGFSFHADAPLDMRMSQSG 131
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: A0A7V7WQP3_9BURK (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7V7WQP3_9BURK)

HSP 1 Score: 64.3 bits (155), Expect = 7.990e-10
Identity = 30/41 (73.17%), Postives = 35/41 (85.37%), Query Frame = 1 
Query:  127 AGPLVDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGT 249
            A P +DG+L+DLGVSS Q+DD ARGFSF ADGPLDMRM+ T
Sbjct:   94 AAPRIDGLLLDLGVSSPQLDDAARGFSFRADGPLDMRMDPT 134
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: A0A2E0UKR0_9GAMM (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Ectothiorhodospiraceae bacterium TaxID=2026737 RepID=A0A2E0UKR0_9GAMM)

HSP 1 Score: 64.3 bits (155), Expect = 8.190e-10
Identity = 28/35 (80.00%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:  139 VDGILVDLGVSSHQIDDGARGFSFSADGPLDMRME 243
            VDG+L+DLG+SSHQID+GARGFSF  DGPLDMRM+
Sbjct:  111 VDGVLLDLGISSHQIDEGARGFSFREDGPLDMRMD 145
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BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Match: A0A2D9EZP7_9PROT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D9EZP7_9PROT)

HSP 1 Score: 64.3 bits (155), Expect = 8.230e-10
Identity = 36/58 (62.07%), Postives = 40/58 (68.97%), Query Frame = 1 
Query:  139 VDGILVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTG--DGDSMGERRVAPTSKEHE 306
            +DG+ +DLGVSS Q+DD ARGFSF ADGPLDMRMEG G    DSM    V  T  E E
Sbjct:   95 IDGVALDLGVSSMQLDDPARGFSFRADGPLDMRMEGDGRLSHDSMSAADVVNTLAEKE 152
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14088.3195.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXR7_ECTSI5.170e-3486.25S-adenosyl-methyltransferase MraW n=1 Tax=Ectocarp... [more]
A0A6H5J8S8_9PHAE8.880e-3387.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3XL64_HETAK9.180e-1268.09Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z182_9STRA1.650e-1068.89Ribosomal RNA small subunit methyltransferase H n=... [more]
UPI001AC4F76F1.770e-1073.17Partial Ribosomal RNA small subunit methyltransfer... [more]
RSMH_ALCBS5.670e-1045.78Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A316P6P4_9FIRM7.810e-1075.00Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A7V7WQP3_9BURK7.990e-1073.17Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A2E0UKR0_9GAMM8.190e-1080.00Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A2D9EZP7_9PROT8.230e-1062.07Ribosomal RNA small subunit methyltransferase H n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14088contigEcto-sp13_S_contig14088:1009..1772 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score130.2
Seed ortholog evalue6e-28
Seed eggNOG ortholog2880.D7FXR7
Model size335
KEGG koko:K03438
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons2
EggNOG free text desc.rRNA (cytosine-N4-)-methyltransferase activity
EggNOG OGsCOG0275@1,KOG2782@2759
EC2.1.1.199
Cds size333
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.9191685-CDS-Ecto-sp13_S_contig14088:1008..10641681462752.9191685-CDS-Ecto-sp13_S_contig14088:1008..1064Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14088 1009..1064 -
1681462752.9402223-CDS-Ecto-sp13_S_contig14088:1495..17721681462752.9402223-CDS-Ecto-sp13_S_contig14088:1495..1772Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14088 1496..1772 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14088.3195.1prot_Ecto-sp13_S_contig14088.3195.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14088 1009..1772 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14088.3195.1

>prot_Ecto-sp13_S_contig14088.3195.1 ID=prot_Ecto-sp13_S_contig14088.3195.1|Name=mRNA_Ecto-sp13_S_contig14088.3195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
SPTSRVSSDPTAVAASPAATTTPPAAAAAAATAAGVPPRTTSAGPLVDGI
LVDLGVSSHQIDDGARGFSFSADGPLDMRMEGTGDGDSMGERRVAPTSKE
HEDRAVENVGR
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mRNA from alignment at Ecto-sp13_S_contig14088:1009..1772-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14088.3195.1 ID=mRNA_Ecto-sp13_S_contig14088.3195.1|Name=mRNA_Ecto-sp13_S_contig14088.3195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=764bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14088:1009..1772- (Ectocarpus species13 EcNAP12_S_4_19m)
TCACCAACGTCGAGAGTATCATCGGACCCGACCGCAGTAGCAGCATCACC
AGCAGCGACCACGACACCGCCAGCAGCAGCAGCAGCAGCAGCGACAGCAG
CGGGGGTACCACCACGTACTACATCTGCGGGCCCCCTGGTCGACGGAATA
CTGGTAGACCTGGGGGTGTCGAGCCACCAGATCGACGACGGGGCCAGGGG
GTTCAGTTTCTCAGCCGACGGGCCCCTCGACATGCGGATGGAGGGGACCG
GGGACGGGGACTCCATGGGCGAAAGAAGTGGGTTCGGGGGTCTTGCAGAA
GTTGTATTGTTGTTCCGCCGGTTCAGATGTTCGTGCGGCACCGAATTTTT
GTTTTTCCGCTCTCGAAAGGCAGTGTCTGTGTGTGTTTGCTGGAGATTTT
TTTGTGCGTGCAGGTAAGTTGGTTCGGTAGTTGTCGTAAGAGCTCACAGA
ATCGACACCTCTGCTGTCAACCGCCGTTCCCCAAAACTTTTTGCTACATC
TCTCCGTCCTGCCCCTATGTATGTGCAACAGCTGCAACCCCCCACCTCCC
CGCCAAACAGTTTCACCAACGCTCCCCTTTTGCAGTACTGTATACTTATC
TCTACAACTCTCTTCCCTTCTCCTGTCATGCGGCGCAGACAGTTTTACAA
CGCCCCTTTCGCAATACTAAATGCTCATCTCGGCAACGCCCTTCCCTTCT
CCTGCTAGGGGTGGCGCCGACATCGAAGGAGCACGAGGACCGAGCCGTTG
AAAATGTCGGCAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14088:1009..1772-

>mRNA_Ecto-sp13_S_contig14088.3195.1 ID=mRNA_Ecto-sp13_S_contig14088.3195.1|Name=mRNA_Ecto-sp13_S_contig14088.3195.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14088:1009..1772- (Ectocarpus species13 EcNAP12_S_4_19m)
TCACCAACGTCGAGAGTATCATCGGACCCGACCGCAGTAGCAGCATCACC
AGCAGCGACCACGACACCGCCAGCAGCAGCAGCAGCAGCAGCGACAGCAG
CGGGGGTACCACCACGTACTACATCTGCGGGCCCCCTGGTCGACGGAATA
CTGGTAGACCTGGGGGTGTCGAGCCACCAGATCGACGACGGGGCCAGGGG
GTTCAGTTTCTCAGCCGACGGGCCCCTCGACATGCGGATGGAGGGGACCG
GGGACGGGGACTCCATGGGCGAAAGAAGGGTGGCGCCGACATCGAAGGAG
CACGAGGACCGAGCCGTTGAAAATGTCGGCAGG
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