mRNA_Ecto-sp13_S_contig14081.3191.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14081.3191.1
Unique NamemRNA_Ecto-sp13_S_contig14081.3191.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 5.320e-39
Identity = 71/79 (89.87%), Postives = 73/79 (92.41%), Query Frame = 3 
Query:  234 TGVCSNGIPGIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDGTAPVPSPVAMPTA 470
            T VCSNGIPGIQSGVSCCLAECGECGGS CAEYG GLGADNCC+SNIEEYGELCSIKLEAPCVVD +AP PSPV MPTA
Sbjct: 1162 TDVCSNGIPGIQSGVSCCLAECGECGGSDCAEYGDGLGADNCCQSNIEEYGELCSIKLEAPCVVDDSAPAPSPVTMPTA 1240
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: D7FJ69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI)

HSP 1 Score: 139 bits (349), Expect = 2.440e-38
Identity = 65/79 (82.28%), Postives = 68/79 (86.08%), Query Frame = 3 
Query:  234 TGVCSNGIPGIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDGTAPVPSPVAMPTA 470
            T VCSNGIPG+QSGVSCCLAECG CGGSGCAE GGGLG  NCCE  IEE+GELCSIKLEAPCVVD +AP PSPVA P A
Sbjct:   32 TDVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVA 110
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: A0A6H5JG29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG29_9PHAE)

HSP 1 Score: 137 bits (345), Expect = 3.590e-34
Identity = 61/77 (79.22%), Postives = 70/77 (90.91%), Query Frame = 3 
Query:  240 VCSNGIPGIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDGTAPVPSPVAMPTA 470
            +CSNGIPGIQSG +CCLAECG CGGSGCA+ GGGLG DNCC+S IE++GELCS+K+ APCVVDG+AP PSPVAMPTA
Sbjct: 1876 MCSNGIPGIQSGNACCLAECGGCGGSGCAQLGGGLGEDNCCQSEIEDFGELCSVKMAAPCVVDGSAPAPSPVAMPTA 1952
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: A0A6H5JII7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JII7_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.100e-30
Identity = 57/68 (83.82%), Postives = 60/68 (88.24%), Query Frame = 3 
Query:  234 TGVCSNGIPGIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDGTA 437
            T VCSNGIPG+QSGVSCCLAECG CGGSGCAE GGGLG  NCCE  IEE+GELCSIKLEAPCV+DG A
Sbjct:  462 TDVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVIDGNA 529
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 5.910e-29
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 3 
Query:  240 VCSNGIPGIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDG 431
            VCSNGIPGIQSG++CCLAECGECGG GCAE+GGGLG DNCC+  IEEYGELCS+ L APC+VDG
Sbjct:  729 VCSNGIPGIQSGITCCLAECGECGGPGCAEFGGGLGQDNCCQGRIEEYGELCSVTLAAPCIVDG 792
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: A0A6H5K6S4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 2.790e-26
Identity = 50/64 (78.12%), Postives = 55/64 (85.94%), Query Frame = 3 
Query:  240 VCSNGIPGIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDG 431
            +CSNG  GIQSG +CCLAECGECGG GC E+GGGLGAD CCES+IEEYGELCSI L APC +DG
Sbjct:  445 MCSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYIDG 508
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 110 bits (274), Expect = 1.190e-24
Identity = 53/72 (73.61%), Postives = 56/72 (77.78%), Query Frame = 3 
Query:  240 VCSNGIPGIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVD-GTAPVPSP 452
            VCSNG PGIQSG SCC AEC  CGG GCAE+GGGLG DNCC   IEEYGELCS  L APC VD G+AP P+P
Sbjct:  541 VCSNGFPGIQSGDSCCHAECEACGGFGCAEFGGGLGEDNCCAVRIEEYGELCSTALAAPCYVDDGSAPPPTP 612
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.070e-13
Identity = 36/64 (56.25%), Postives = 43/64 (67.19%), Query Frame = 3 
Query:  261 GIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDGTAPVPSP 452
            GI +G +CC  EC  CGG GC+  GGGL  D+CC SNIEE+G LCS+  +APC VDG     SP
Sbjct:   77 GILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGEVGTSSP 140
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.010e-11
Identity = 30/56 (53.57%), Postives = 41/56 (73.21%), Query Frame = 3 
Query:  261 GIQSGVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVD 428
            GIQ G  CC A CGECGG GC+  G GL  D+CC+S+I++ G +CS+  +APC++D
Sbjct:  636 GIQRGDFCCSAGCGECGGDGCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691
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BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Match: D7FHN6_ECTSI (Glycin-rich protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN6_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 6.940e-11
Identity = 33/65 (50.77%), Postives = 42/65 (64.62%), Query Frame = 3 
Query:  243 CSNGIPGIQS--GVSCCLAECGECGGSGCAEYGGGLGADNCCESNIEEYGELCSIKLEAPCVVDG 431
            C+NG+PG++S  G  CC A CG CGG GC E G    AD CC + I +YG+ CS+   APC +DG
Sbjct: 1177 CTNGVPGVESTMGEVCCPASCGHCGGVGCDERGA---ADECCTTEIMDYGQPCSVTGTAPCYLDG 1238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14081.3191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7FJ68_ECTSI5.320e-3989.87WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FJ69_ECTSI2.440e-3882.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG29_9PHAE3.590e-3479.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JII7_9PHAE2.100e-3083.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJ37_9PHAE5.910e-2981.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6S4_9PHAE2.790e-2678.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI1.190e-2473.61EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FRL2_ECTSI1.070e-1356.25Endo alpha-1,4 polygalactosaminidase precusor n=1 ... [more]
D8LJ42_ECTSI1.010e-1153.57FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FHN6_ECTSI6.940e-1150.77Glycin-rich protein n=1 Tax=Ectocarpus siliculosus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14081contigEcto-sp13_S_contig14081:2048..3176 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size544
Hectar predicted targeting categoryother localisation
Exons4
Cds size426
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.6957529-CDS-Ecto-sp13_S_contig14081:2047..22181681462752.6957529-CDS-Ecto-sp13_S_contig14081:2047..2218Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14081 2048..2218 +
1681462752.7084093-CDS-Ecto-sp13_S_contig14081:2282..23481681462752.7084093-CDS-Ecto-sp13_S_contig14081:2282..2348Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14081 2283..2348 +
1681462752.717155-CDS-Ecto-sp13_S_contig14081:2612..28011681462752.717155-CDS-Ecto-sp13_S_contig14081:2612..2801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14081 2613..2801 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.725396-UTR-Ecto-sp13_S_contig14081:2801..28041681462752.725396-UTR-Ecto-sp13_S_contig14081:2801..2804Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14081 2802..2804 +
1681462752.7336526-UTR-Ecto-sp13_S_contig14081:3061..31761681462752.7336526-UTR-Ecto-sp13_S_contig14081:3061..3176Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14081 3062..3176 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14081.3191.1prot_Ecto-sp13_S_contig14081.3191.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14081 2048..2801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14081.3191.1

>prot_Ecto-sp13_S_contig14081.3191.1 ID=prot_Ecto-sp13_S_contig14081.3191.1|Name=mRNA_Ecto-sp13_S_contig14081.3191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=142bp
DSAPAPSPVDEPTAPVAEPTAPVAEPTAPVAEPTAPVAEPTAPVAGPTAP
VAEPTAPSPSLLHRLPSLLRLWPSPLHPPACARTESPASSQGSLAVSRSA
VNAAGLAVRSTAVALGRTTAARATSRSTASSALSSWRRHVS*
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mRNA from alignment at Ecto-sp13_S_contig14081:2048..3176+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14081.3191.1 ID=mRNA_Ecto-sp13_S_contig14081.3191.1|Name=mRNA_Ecto-sp13_S_contig14081.3191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1129bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14081:2048..3176+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCCGCCCCTGCGCCTTCGCCGGTCGACGAGCCCACCGCACCTGTGGC
TGAACCTACCGCCCCTGTCGCCGAGCCCACCGCACCGGTCGCTGAGCCCA
CTGCACCAGTCGCCGAACCTACTGCACCGGTTGCCGGGCCTACTGCGCCT
GTCGCTGAACCTACTGCACCAGTCGCCGAGCCAACTGCGCCTGTAGCCGA
GCCGACGGCACCTGTTGCTGAACCTACTGCACCAGTCGCCGAGCCTACTG
CACCGGTTGCCGAGCCTACTGCGCCTGTGGCCGAGCCCACTGCACCCACC
GGTGAGTAATCTGTCGCGTGCTTTTATGGTGGAGTCGCCAGAAGACTAGT
GCTCTGCGGGGTCATTCACTTCGATTTTGGCAGTATCCTTCGTATCGTAC
GACGCTCCAACCATTCAATGCTGAAGGCCTTTCTGCACCCGACGCGCGGC
CCTACTCATGGTGTTGTTTTACGTATCTCTCTAAATTCTTCACGACGCAT
CGTCCCACATTGTCCCTCTCTTTCCTTCCGGCCGCATAATGTTGTGCTGT
TGTTTCTTCCACCAGGCGTGTGCTCGAACGGAATCCCCGGCATCCAGTCA
GGGGTCTCTTGCTGTCTCGCGGAGTGCGGTGAATGCGGCGGGTCTGGCTG
TGCGGAGTACGGCGGTGGCCTTGGGGCGGACAACTGCTGCGAGAGCAACA
TCGAGGAGTACGGCGAGCTCTGCTCTATCAAGCTGGAGGCGCCATGTGTC
GTAGACGGTGAGACCTCTCATACTGGTGTCCCCATTTTCCCTCCGACCTC
CTTTGTTGTTCTTCATTTTGCTGCACAAACGCCTGTCTGTTGTCGACGAC
CATGTTCACGGCTGGTATTGTACTGTGTCATCCTCGCACAATACCTGCAT
CAATCGCGAAGGCTCGAGGTACTCTTTTGCACGGCTCTGTGCATAACGCA
CAGCGCACGATATCTCCAACTCCCTTGCCCCATCATTGCCACTCGGGAAT
GTTTTTATTAGCAGGCACGGCTCCTGTGCCTTCGCCGGTCGCCATGCCTA
CTGCCCCTGTGGCTGAGCCGACTGCCCCCGTCGCCGAGCCTGCGGCACCT
GTCGCTGAGCCCACTGCACCTGTCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14081:2048..3176+

>mRNA_Ecto-sp13_S_contig14081.3191.1 ID=mRNA_Ecto-sp13_S_contig14081.3191.1|Name=mRNA_Ecto-sp13_S_contig14081.3191.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14081:2048..3176+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCCGCCCCTGCGCCTTCGCCGGTCGACGAGCCCACCGCACCTGTGGC
TGAACCTACCGCCCCTGTCGCCGAGCCCACCGCACCGGTCGCTGAGCCCA
CTGCACCAGTCGCCGAACCTACTGCACCGGTTGCCGGGCCTACTGCGCCT
GTCGCTGAACCTACTGCACCATCGCCGAGCCTACTGCACCGGTTGCCGAG
CCTACTGCGCCTGTGGCCGAGCCCACTGCACCCACCGGCGTGTGCTCGAA
CGGAATCCCCGGCATCCAGTCAGGGGTCTCTTGCTGTCTCGCGGAGTGCG
GTGAATGCGGCGGGTCTGGCTGTGCGGAGTACGGCGGTGGCCTTGGGGCG
GACAACTGCTGCGAGAGCAACATCGAGGAGTACGGCGAGCTCTGCTCTAT
CAAGCTGGAGGCGCCATGTGTCGTAG
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