mRNA_Ecto-sp13_S_contig10320.319.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10320.319.1
Unique NamemRNA_Ecto-sp13_S_contig10320.319.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10320.319.1 vs. uniprot
Match: D8LRL6_ECTSI (Putative NIN-like transcription factor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRL6_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.070e-73
Identity = 145/154 (94.16%), Postives = 147/154 (95.45%), Query Frame = 2 
Query:    2 GPVAGGHMPPPGMDVGMQYFMPPDSTGGMGYVDGGQHHXXXXXXXXXXXXXXXXXXXXXXXXXMLMQSNPGFAMQGGFVPVGYDLYSQAAPFAGAGMDGLSAGAPGAAHPLVPYMQGARIPGAAGAADAMRASAAHYPQQWHGGEAAGLGGNVA 463
            GP  GGHMPPPGMD+GMQYFMPPDSTGGMGY+DG QHHXXXXXXXXXXXXXXXXXXXXXXXXX LMQSNPGFAMQGGFVPVGYDLYSQAAPFAGAGMDGLSAGAPGAAHPLVPYMQGARIPGA GA DAMRASAAHYPQQWH GEAAGLGGNVA
Sbjct:  235 GPAGGGHMPPPGMDMGMQYFMPPDSTGGMGYMDGSQHHXXXXXXXXXXXXXXXXXXXXXXXXXXLMQSNPGFAMQGGFVPVGYDLYSQAAPFAGAGMDGLSAGAPGAAHPLVPYMQGARIPGATGAGDAMRASAAHYPQQWHSGEAAGLGGNVA 388
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BLAST of mRNA_Ecto-sp13_S_contig10320.319.1 vs. uniprot
Match: A0A6H5J9E8_9PHAE (RWP-RK domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9E8_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 2.100e-67
Identity = 118/154 (76.62%), Postives = 122/154 (79.22%), Query Frame = 2 
Query:    2 GPVAGGHMPPPGMDVGMQYFMPPDSTGGMGYVDGGQHHXXXXXXXXXXXXXXXXXXXXXXXXXMLMQSNPGFAMQGGFVPVGYDLYSQAAPFAGAGMDGLSAGAPGAAHPLVPYMQGARIPGAAGAADAMRASAAHYPQQWHGGEAAGLGGNVA 463
            GP AGGHMPPPGMD+GMQYFMPPDSTGGMGYVDGGQ H                         MLMQSNPGFAMQGGFVPVGYDLYSQAAPFAGAGMDGLSAGAPGAAHPL+PYMQGARIPG     DAMRASAAHYPQQWHGGE+AGLGGN+A
Sbjct:  198 GPAAGGHMPPPGMDMGMQYFMPPDSTGGMGYVDGGQPHHHAPGAGAQPQHQGQHLQQAQQQQLMLMQSNPGFAMQGGFVPVGYDLYSQAAPFAGAGMDGLSAGAPGAAHPLIPYMQGARIPG-----DAMRASAAHYPQQWHGGESAGLGGNMA 346
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10320.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRL6_ECTSI1.070e-7394.16Putative NIN-like transcription factor n=1 Tax=Ect... [more]
A0A6H5J9E8_9PHAE2.100e-6776.62RWP-RK domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10320contigEcto-sp13_S_contig10320:120..1437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size537
Hectar predicted targeting categoryother localisation
Exons3
Cds size537
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462523.0905638-CDS-Ecto-sp13_S_contig10320:119..2761681462523.0905638-CDS-Ecto-sp13_S_contig10320:119..276Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10320 120..276 -
1681462523.102852-CDS-Ecto-sp13_S_contig10320:759..9371681462523.102852-CDS-Ecto-sp13_S_contig10320:759..937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10320 760..937 -
1681462523.1109383-CDS-Ecto-sp13_S_contig10320:1235..14371681462523.1109383-CDS-Ecto-sp13_S_contig10320:1235..1437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10320 1236..1437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10320.319.1prot_Ecto-sp13_S_contig10320.319.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10320 120..1437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10320.319.1

>prot_Ecto-sp13_S_contig10320.319.1 ID=prot_Ecto-sp13_S_contig10320.319.1|Name=mRNA_Ecto-sp13_S_contig10320.319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=179bp
GAGSRRSYAPPRHGRGDAVLHAARFHRRYGLRGRGAAPPPRSRSGGSAAA
PGPAPSTGAAAATHADAVEPGLRDARGLRAGGLRLVQPGRTIRRSWHGRP
LCRRSGGCSPSRSLHAGGAYPRCCWCSRCNAGVCGALPAAMARWRGGGPR
WQRGGDTPTATATFHAAETASSTTGVLC*
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mRNA from alignment at Ecto-sp13_S_contig10320:120..1437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10320.319.1 ID=mRNA_Ecto-sp13_S_contig10320.319.1|Name=mRNA_Ecto-sp13_S_contig10320.319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10320:120..1437- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCGGTAGCAGGAGGTCATATGCCCCCCCCCGGCATGGACGTGGGGA
TGCAGTACTTCATGCCGCCCGATTCCACCGGCGGTATGGGCTACGTGGAC
GGGGGGCAGCACCACCACCACGCTCCAGGAGCGGGGGCTCAGCCGCAGCA
CCAGGGCCAGCACCCTCAACAGGCGCAGCAGCAGCAACTCATGCTGATGC
AGGTGTGTTGTTGTCGTGAGCTCCGTTATCGTTGTGGTTGATCGTGTGGG
CAGTAATGTGATGGTGTTTCAAGTTTACAGCCTGCGCCAGGCAGACACTT
GTAGATATTTCCCCTCTACGTGTGTATCATGCCGTTACTAGTGGCGAGAA
CCAGCAGGCATCGGCTAGGAGTAGCTGATAGCAGGCGGCCTGTGCTTCAC
GTTTTTGCGGCCCACCCGTCCCTGAACTAGTGACGCTAGCCTTCCGGTCT
AGGCGATTCTCGCTCCCCCTCCTCCCGTGGCTTCTCTGTCCCGGCCTCAG
TCGAACCCGGGCTTCGCGATGCAAGGGGGCTTCGTGCCGGTGGGCTACGA
CTTGTACAGCCAGGCCGCACCATTCGCCGGAGCTGGCATGGACGGCCTCT
CTGCCGGCGCTCCGGGGGCTGCTCACCCTCTCGTTCCCTACATGCAGGGG
GCGCGTATCCCCGGTGCTGCTGGTGCAGGTAAGCGGCAAAGTGAGGGGTG
CCGCAAGGGAGATAGAAGGGATGGGCAGGCGGTGCTGACTTTGCTGGTTA
GTTGTAGCCGCGCTTTTGTGCGTGTGTGTTGCGGGTTGATCATGATTGAT
ACTTTATTCTTCGGGGCGATGGCTGCTGCTTTCGCCGTCTATTGTGTGGC
ACTTGTACATTCCATGTACCGTACCCGGTAGTGTGGTTTATCTCGTCCGT
CCTGGCTCGTGCCCCGTCCCATGCAGCAGTGTTGCGCTGGGATAACCGTG
GATACCCCACCCCCCAGTATCCGCTTGAGTTGAAGTCTCGCATGTTTAGC
TGCCTTGCGGTTTTTTCTTTTTTATTGGTCCTGTTGTCGATCCCTCTCGA
ACGCAAACCGTACGCAAAAAATCCGTAGGCATAAACACACACGCACGCGC
GGCAGTTAGCGCGGGCTCAGTGTATCTCCACCTCCCCCCCCCCGCGCTTT
GTTCACAACAGCCGATGCAATGCGGGCGTCTGCGGCGCACTACCCGCAGC
AATGGCACGGTGGCGAGGCGGCGGGCCTAGGTGGCAACGTGGCGGCGATA
CTCCAACAGCAACAGCAACATTTCATGCAGCAGAGACGGCTTCATCAACA
ACAGGTGTGTTGTGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10320:120..1437-

>mRNA_Ecto-sp13_S_contig10320.319.1 ID=mRNA_Ecto-sp13_S_contig10320.319.1|Name=mRNA_Ecto-sp13_S_contig10320.319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10320:120..1437- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGCCGGTAGCAGGAGGTCATATGCCCCCCCCCGGCATGGACGTGGGGA
TGCAGTACTTCATGCCGCCCGATTCCACCGGCGGTATGGGCTACGTGGAC
GGGGGGCAGCACCACCACCACGCTCCAGGAGCGGGGGCTCAGCCGCAGCA
CCAGGGCCAGCACCCTCAACAGGCGCAGCAGCAGCAACTCATGCTGATGC
AGTCGAACCCGGGCTTCGCGATGCAAGGGGGCTTCGTGCCGGTGGGCTAC
GACTTGTACAGCCAGGCCGCACCATTCGCCGGAGCTGGCATGGACGGCCT
CTCTGCCGGCGCTCCGGGGGCTGCTCACCCTCTCGTTCCCTACATGCAGG
GGGCGCGTATCCCCGGTGCTGCTGGTGCAGCCGATGCAATGCGGGCGTCT
GCGGCGCACTACCCGCAGCAATGGCACGGTGGCGAGGCGGCGGGCCTAGG
TGGCAACGTGGCGGCGATACTCCAACAGCAACAGCAACATTTCATGCAGC
AGAGACGGCTTCATCAACAACAGGTGTGTTGTGTTAA
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