mRNA_Ecto-sp13_S_contig1408.3189.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1408.3189.1
Unique NamemRNA_Ecto-sp13_S_contig1408.3189.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A6H5KIQ9_9PHAE (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ9_9PHAE)

HSP 1 Score: 1043 bits (2696), Expect = 0.000e+0
Identity = 588/669 (87.89%), Postives = 605/669 (90.43%), Query Frame = 2
Query:    2 SLLAVMAPAALCLLSTPPASALSLFGFGSSSDSAATEEARARAVALIRENAAGDEFIPPASGVGRRDAARFAAARAAGKLVCTSSSGAGASTEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPEGACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQEIEDVRLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRGVLEDPERLAALAIAVASADEPSVTLETLCRSVLDGVDVGVALKDLLDEGKKKDKDGSKKKGVPDAGEEDTVDAFLSAEDEDLEAGYDDHFGGLGGYEDMMLDDDYMGYYGGGYDXXXXXXXXXXXXXXXDARFGGAXXXXXXXEANPVPKVDSHAGVEGGGDREGNGDGGSPKVALDASDGGGNREVAAGEGKEEESEQPEASEPKKKAAPFKPPREFKTFKFETPEAVEGRKEVKSLSDGLKVQEKKLKTLEQEDSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQEEGKSKTLIGKWKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRHALIASVAGGAGEGLRRDDGAGVRDEL 2008
            SLLA +APAAL LLSTPPASALSLFGFGSSS SAATEEARARAVALIRENAAGDEF PPASGVGRRDAARF AARAAGKLVCTSSS AG STEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGH SVRLPSSRVGDGVCDCCDGSDEP G CKASCEEA+EEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQEIE+ RLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRGVLEDPERLAALA+AVASADEPSVTLETLCRSVLDGVDVGVALKDLLDEGK+K K+GSKK GVP+AGEED VDAFLSAEDEDLEAGYDDHFGGLG Y+ MMLDDDYMGYYGGGYDXXXXXXXXXX     DARFGGA XXXXXX                         GGSP VALDASDG    EVAAG G EEES+QPEA EPKKKAAPFKPPREFK+F+FETPEA  GRKEVK LSD LKVQE+KLKTLEQEDSEDYGEDGALWPLKDKCIT KTGGYEYRVCPFKDAHQEEGKSKTLIGKWKGIE+A+ADD+RQLQQQHQQL+LSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQR ALIA V+GGAGE LRR DGAGVRDEL
Sbjct:    5 SLLAAVAPAALGLLSTPPASALSLFGFGSSSGSAATEEARARAVALIRENAAGDEFTPPASGVGRRDAARFTAARAAGKLVCTSSSEAGGSTEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHWSVRLPSSRVGDGVCDCCDGSDEPAGVCKASCEEAAEEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQEIEESRLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRGVLEDPERLAALAVAVASADEPSVTLETLCRSVLDGVDVGVALKDLLDEGKQKGKEGSKK-GVPEAGEEDAVDAFLSAEDEDLEAGYDDHFGGLGDYDHMMLDDDYMGYYGGGYDXXXXXXXXXXDAYEDDARFGGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGSPIVALDASDGXXXXEVAAGGGMEEESKQPEAPEPKKKAAPFKPPREFKSFEFETPEAARGRKEVKKLSDDLKVQERKLKTLEQEDSEDYGEDGALWPLKDKCITAKTGGYEYRVCPFKDAHQEEGKSKTLIGKWKGIERAEADDVRQLQQQHQQLILSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRDALIAGVSGGAGEDLRRADGAGVRDEL 672          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: D7G0Y2_ECTSI (Glucosidase 2 subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y2_ECTSI)

HSP 1 Score: 984 bits (2543), Expect = 0.000e+0
Identity = 544/655 (83.05%), Postives = 557/655 (85.04%), Query Frame = 2
Query:   29 ALCLLSTPPASALSLFGFGSSSDSAATEEARARAVALIRENAAGDEFIPPASGVGRRDAARFAAARAAGKLVCTSSSGAGASTEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPEGACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQEIEDVRLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRGVLEDPERLAALAIAVASADEPSVTLETLCRSVLDGVDVGVALKDLLDEGKKKDKDGSKKKGVPDAG--EEDTVDAFLSAEDEDLEAGYDDHFGGLGGYEDMMLDDDYMGYYGGGYDXXXXXXXXXXXXXXXDARFGGAXXXXXXXEANPVPKVDSHAGVEGGGDREGNGDGGSPKVALDASDGGGNREVAAGEGKEEESEQPEASEPKKKAAPFKPPREFKTFKFETPEAVEGRKEVKSLSDGLKVQEKKLKTLEQEDSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQEEGKSKTLIGKWKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRHALIASVAGGAGEGLRRDDG 1987
            ALCLLS PPASALSLFGFGSSSD AATEEARARAVALIRENAAGDEF PPASGVGRRDAARFAAARAAGKLVCTSSSG   STEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEP GACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAA+VRT+EIED+RLVTE ARDKLAQAKEALKALEEQETQQKN+KLAEAEKAVSERTRGVLEDPERLAALA+AVASADEPS TLETLCRSVLDGVDVGVALKDLLDEGKKKDKDGSKKKGVP  G  EED VDAFLSAEDEDLEAGYD H GGLGGY+DMM                                                   DSHAG EGGGD EGNG+GGS KV LDASDGG                 PEA+EPKKK APFK PREFKT KFETPEAVEGRKEVK+LSD LKVQEKKLKTLEQE+SEDYGEDGALWPLKD+CIT KTGGYEYRVC FKDAHQEEGKSKTLIGKWKGIE+A+ADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQR ALIASVAGGAGE LR  DG
Sbjct:    4 ALCLLSIPPASALSLFGFGSSSDGAATEEARARAVALIRENAAGDEFTPPASGVGRRDAARFAAARAAGKLVCTSSSGEEGSTEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPAGACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAASVRTKEIEDIRLVTESARDKLAQAKEALKALEEQETQQKNEKLAEAEKAVSERTRGVLEDPERLAALAVAVASADEPSATLETLCRSVLDGVDVGVALKDLLDEGKKKDKDGSKKKGVPGVGVGEEDAVDAFLSAEDEDLEAGYDGHLGGLGGYDDMM--------------------------------------------------ADSHAGGEGGGDNEGNGEGGSTKVGLDASDGGXXXXXXXXXXXXXXXXXPEAAEPKKKTAPFKAPREFKTLKFETPEAVEGRKEVKNLSDDLKVQEKKLKTLEQEESEDYGEDGALWPLKDRCITAKTGGYEYRVCAFKDAHQEEGKSKTLIGKWKGIERAKADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRDALIASVAGGAGEDLRSSDG 608          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A1Y1VLU8_9FUNG (Glucosidase 2 subunit beta n=1 Tax=Piromyces finnis TaxID=1754191 RepID=A0A1Y1VLU8_9FUNG)

HSP 1 Score: 123 bits (308), Expect = 1.630e-25
Identity = 153/571 (26.80%), Postives = 232/571 (40.63%), Query Frame = 2
Query:  272 STEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCD--CCDGSDEPEG--ACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQEIEDVRLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRGVLEDPERLAALAIAVASADEPSVTLETLCRSVLDGVDVGVALKDLLDEGKK---KDKDGSKKKGVPDAG------------EEDTVDAFLSAEDEDLEAGYDDHFGGLGGYED---MMLDDDYMGYYGGGYDXXXXXXXXXXXXXXXDARFGGAXXXXXXXEANPVPKVDSHAGVEGGGDREGNGDGGSPKVALDASDGGGNREVAAGEGKEEESEQPEASEPKKKAAPFKPPREFKTFKFETPEAVEGRKEVKSLSDGLKVQEKKLKTLEQEDSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQE--EGKSKTLIGKWKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGAC 1912
            S  IS+D IND++CDCP DGSDEPGTSAC N +F C N+GH    +PSSRV DG CD  CCDGSDE      C   CE+ S E      +R   +++G A++  Y E A        ++ E + L       K+ + KE     E  + + +  K  E  K + E+   VL++           +  ++ +  L    + V    D    + +LLD+ +     D + SK   V  +             EE+ VD  +    E++E   D+  G +   +D   + LD D M  +   ++                +              N    +    G                K  L+ +       V         S+    SE    +  F+    F+  K      +E +  +KS       +EK+L  ++++   D+G       L +KC   +  GY Y +C FKDA Q+  +G S T +G W G +                   S  V+ F  G+KCWNGP RS +V L C  ++ LS V+EP  C YE +  TP  C
Sbjct:   72 SKTISYDSINDDYCDCP-DGSDEPGTSACLNSMFYCKNKGHVPAYIPSSRVNDGTCDPECCDGSDEYSSDIQCPNICEKVSYEQNKEEIERKKVLKEGLAKKAKYLEDAANMIKKENEKKEKLELEINNLNVKIERLKEIQTIAENVDKRVQEIKEKEVNKIIIEKCPNVLKECN---------SEYNDINSELNINSKKVEKYEDGFQNISNLLDDIQNILTSDNNESKLNEVISSXXXXXXXXXXXXXEENEVDDEII---ENVEDNNDEEDGTINNEKDKFPLNLDVD-MNKFKKEFELSPCEDSSKNILICVGSGIKSLFIGMKENLNNDTKNLLGWKGWR------------RLKNPLNLTI---KNIVXXXXXXXXISKDFRRSENGDDSRDFEFDINFEELKNNY---LEVKSLIKSAQSSYDKKEKELNKIKEKTDIDFGPQNVFKTLYNKCYDVEASGYIYTLCLFKDAKQKPKDGNSSTNLGTWNGFD-------------------SPTVMKFSNGEKCWNGPQRSAKVILKCSDKNELSNVSEPSKCEYEMIFYTPAVC 591          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A812L8W4_9DINO (Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812L8W4_9DINO)

HSP 1 Score: 117 bits (294), Expect = 6.320e-25
Identity = 60/107 (56.07%), Postives = 72/107 (67.29%), Query Frame = 2
Query:  293 KINDNFCDCPHDGSDEPGT----------SACSNGVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEPEGACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEA 583
            K+ND+FCDCP DGSDEPGT          +AC+NG F C N+G R V LPSSRVGDGVCDCCDGSDEP G C  +C+EA  EW    A+R+ + E G   +V + EA
Sbjct:    5 KVNDDFCDCP-DGSDEPGTGEANLPHARAAACANGKFYCVNKGFRGVYLPSSRVGDGVCDCCDGSDEP-GTCADTCDEAGAEWRKAEAERIQRAEAGAKAKVAFLEA 109          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A0L0DN19_THETB (Glucosidase 2 subunit beta n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DN19_THETB)

HSP 1 Score: 118 bits (295), Expect = 2.520e-24
Identity = 63/138 (45.65%), Postives = 80/138 (57.97%), Query Frame = 2
Query: 1541 DYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQEE--GKSKTLIGKWKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRHALIASV 1948
            D G +   +PL  KC++ KT  YEY VCPFKDA Q+   G S TL+G W   + A                   D ++F+ G KCWNGP RSLRVAL CG++D L A+ EPE CTY AVL TP AC ++  HA +A +
Sbjct:  352 DVGPEAEFFPLVGKCVSFKTREYEYEVCPFKDARQKSLSGGSSTLLGSWGKWDPAY------------------DSMLFENGAKCWNGPMRSLRVALVCGSDDELYAIDEPEKCTYTAVLATPAACDAS--HAAVADL 469          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A067LUJ6_9AGAM (Glucosidase 2 subunit beta n=1 Tax=Botryobasidium botryosum FD-172 SS1 TaxID=930990 RepID=A0A067LUJ6_9AGAM)

HSP 1 Score: 118 bits (295), Expect = 4.840e-24
Identity = 148/582 (25.43%), Postives = 229/582 (39.35%), Query Frame = 2
Query:  272 STEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCD--CCDGSDEPEGACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQEIEDVRLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRGVLEDPERLAALAIAVASADEPSVTLETLC-------------RSVLDGVDVGVALKDLLDEGKKKDK----DGSKKKGVPDAGEED-TVDAFLSAEDEDLEA---GYDDHFGGLGGYED----------MMLDDDYMGYYGGGYDXXXXXXXXXXXXXXXDARFGGAXXXXXXXEANPVPKVDSHAGVEGGGDREGNGDGGSPKVALDASDGGGNREVAAGEGKEEESEQPEASEPKKKAAPFKPPREFKTFKFETPEAVEGRKEVKSLSDGLKVQEKKLKTLEQEDSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQEEGK--SKTLIGKWKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGAC 1912
            S EI +  +ND+FCDC  DGSDEPGTSAC+NG+F CAN GH S ++ SSRV DG+C+  CCDGSDEP G C   CEE  +E+ A           G   R  Y   A +        I  + +     R   A+ K+ L+  E        D  A A K  S   R + +  + L++L  + A   E    LE +               +VL+ V    AL    D+ K K+     D S K   P   EE+ T+D     +++D+ +    ++ H G  G   +          + + D ++  Y    +                +  G          ++ + K  +                 S  +AL+A                                                        + +  + LK +++ L+ L   D   +G+ G    LKD C+   TG Y Y VC F  A Q+  +  +   +G++     + +    +L    +Q+        +D G +CWNGP RS+ + L+CGTE++L +++EPE C Y  V  TP  C
Sbjct:   52 SGEIPFSAVNDDFCDCK-DGSDEPGTSACANGLFYCANEGHVSAKIRSSRVNDGLCEPECCDGSDEPSGVCPNICEEIGKEYRAAAEAEQKTRRTGAKIRSTYIAFAQKEKKRLEDAISALNIEVAEKRANEARVKDILERTEAL------DAAALAHKKESPLYRHLEDKNDILSSLLTSHAELKERITALEAVLDGLKRGYNPNYQDMAVLEAVRGWEALSGEADKDKDKEPAAADDSSAKPAEPPVEEEEWTLDQINEIKNKDVVSLLLEHEKHIGSSGITTEQATSLLYSLELYIPDAFLPIYQSAREWLVSTL----------SLLGVVTTPASTDSSSEISKART-----------------SHSLALNA--------------------------------------------------------LHNAENSLKSEQEALEKLFALDG--FGKKGEWKKLKDVCLEKDTGEYTYTVCLFGSATQKSNRDGASNNLGRYSSWNTSPSTSPGELAYYSRQI--------YDHGAQCWNGPQRSVTLDLSCGTENALLSISEPEKCEYSFVGTTPALC 533          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A4D8YZ59_SALSN (Glucosidase 2 subunit beta n=4 Tax=Salvia TaxID=21880 RepID=A0A4D8YZ59_SALSN)

HSP 1 Score: 118 bits (295), Expect = 8.560e-24
Identity = 177/681 (25.99%), Postives = 254/681 (37.30%), Query Frame = 2
Query:  170 IPPAS---GVGRRDAARFAAARAAGKLVCTSSSGAGASTEISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCD-----------------CCDGSDEPEGA--CKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQEIEDVRLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRGVLEDPERLAALAIAVASADEPSVTLETLCRSVLDGVDVGVALKDLLDEGKKKDKDGSKKKGVPDAGEEDTVDAFLS--AEDEDLEAGYDDHFG---------GLGGYEDMMLDDDYMGYYGGGYDXXXXXXXXXXXXXXXDARFGGAXXXXXXXEA-------------------NPVPKVDSHAGVEGGGDREG-----NGDGGSPKVALDASDGGGNREVAAGEGKEEESEQPEASEPKKKAAPF--KPPREFKTFK-----FETP----EAVEGRKEVKSLSDGLKVQEKKLKTLEQEDSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQEEGKSKTLIGKWKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRHALIASVAGGAGEGLRRDDGAGVRDEL 2008
            +PP     GV   DA+ +    +A  + C        S + +  + ND+FCDCP DG+DEPGTSAC NG F C N GH  V L SSRV DG+C                  CCDGSDE +G   C  +C EA +     L  ++   ++G                +R QEIE  +L       +L + KE  K L     + K  K                       A A      D  +   E   + + D  D+G+   D   +   +D  GS  +  P+ G+    D   +  A ++D       H G         GL     ++      G  G  Y                    G         E                    N  P   ++    G G  E      + D       +D  DG    + ++ +  E + E   +      ++ +  K  +  K+       F+ P    EA + RKE    S  L   + ++  L+Q+  ED+G +   +    KC  +K   Y Y+VCPFK A QEEG S T +G W+  E+                  S  V+ F  G KCWNGP RSL+V L CG ++ L+ V EP  C Y A L TP  C   +   L   +     E L +D   G+ DEL
Sbjct:   30 LPPIDSLFGVSPEDASYYKGLSSASAIKCKD-----GSKKFNKSQFNDDFCDCP-DGTDEPGTSACPNGKFYCKNAGHAPVVLYSSRVNDGICGNILCFNPILLFELIGCYCCDGSDEYDGKTICPNTCWEAGKVAREKLKKKIATYQEGVT--------------IRRQEIEKAKLSISKEEAELQKLKEEEKILNGLVEKLKERKXXXXXXXXXXXXXXXXXXXXXXXAQA--TKDDDTKAEDTEPTPKDIHD--DIGLV--DQPPQDSAEDNHGSSSE--PELGDHSIEDERSNDVAGEQDGSIQNTKHLGEDSTSHGKDGLDSGNQVLAFLLCTGSQGNPYLFFQVEDGAENTESLSKEELGRLVASRWTGEKTEQHKEEIDTSQNQDHQYPNETPNESNYEDDTGYGSEEDEYNRYDDDDADSDDQVDDFDGANQYDSSSSQRHESDDELDFSDITGTSSSSWLDKIQQRVKSIFQAVNIFQKPVNVSEAAQVRKEYDESSSKLSKIQSRISHLKQKLKEDFGPEKEFYSFYGKCFESKQNKYVYKVCPFKQATQEEGYSTTRLGSWEKFEE------------------SYRVMQFMNGDKCWNGPDRSLKVRLRCGLKNELTDVDEPSRCEYLAFLATPALCVEDKLKELQEKL-----ESLNKDQPKGIHDEL 659          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A286UMG3_9AGAM (Glucosidase 2 subunit beta n=1 Tax=Pyrrhoderma noxium TaxID=2282107 RepID=A0A286UMG3_9AGAM)

HSP 1 Score: 117 bits (292), Expect = 1.120e-23
Identity = 154/580 (26.55%), Postives = 237/580 (40.86%), Query Frame = 2
Query:  281 ISWDKINDNFCDCPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCD--CCDGSDEPEGACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQEIEDVRLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRGVLEDPERLAALAIAVASADEPSVTLETLCRSVLDGVDVGVALKDLLDEGK----------KKDKDGSKKKGVPDAGEEDTVDAFLSAEDEDLEAGYDDHFGGLGGYEDM--MLDDDYMGYYGGGYDXXXXXXXXXXXXXXXDARFGGAXXXXXXXEANPVPKVDSHAGVEGGGDREGNGDGGSPKVALDASDGGGNREVAAGEGKEEESEQPEASEPKKKAAPFKPPREFKTFKFET----PEAVEGRKEVKSLS-DGLKVQEKKLKTLEQE------------DSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQE--EGKSKTLIGK---WKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGAC 1912
            ISWD +ND+FCDCP DGSDEPGTSAC N +F C N GH    + SSRV DG+C+  CCDG+DE  G C   CE+  +E+ A +       + G+  R  Y    +  A    + +E+  LV   +RD  A+ KE  K     +  +   +    +K  S   + ++E    L AL  +     E   TL  +  ++  G +       +L+  +            D+D +K+    +AG E + D   S E+E L   YDD +      +D+  +LD D                                           + + D H G +            +  +  D S                 S  P+A  P+     ++  R++     ET     EA  G     S +   L+  E +L+TL +E            D E YG +G    L  +C++  TG Y Y VC F +A Q+  +G S   +GK   W  +E  +        + +           + +G +CWNGP RS+++AL CGTE+++  + EPE C Y     +P  C
Sbjct:   54 ISWDAVNDDFCDCP-DGSDEPGTSACPNSIFYCKNEGHIGATIRSSRVYDGLCEPECCDGTDEATGVCPNICEQVGKEYRARVEAENKIRKTGSKIRSSY----ITFANKEKKRLEE--LVAVSSRDVAAKEKEVEKLKNLLDRAESTSEAELEKKKESPLYQSLVEHSMALRALKRSYEELLEKEKTLSDILSALRAGYNPNYQDMAVLEAVRGYEFYAGLPASNDRDRAKE---DEAGSEVSKDDSGSKEEEPL-VEYDDEWTKDQLEKDLTDLLDTDIESL---------------------------------------LLEHDQHVGND------------AESLLFDLS-----------------SYIPDAFIPQ-----YELLRDYLVSFLETIGVVREAAGGSDSSTSKARTALQNAENELRTLRKEKESAQKDIARLFDPEWYGSEGEWKKLDGQCLSKDTGEYTYEVCMFGEARQKPNKGGSTHSLGKFSSWNDVEGVEVGSPEYYSRMN-----------YKKGARCWNGPERSVKLALTCGTENAILTIAEPEKCEYLLTGTSPALC 538          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A2R6WUH1_MARPO (Glucosidase 2 subunit beta n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WUH1_MARPO)

HSP 1 Score: 117 bits (292), Expect = 1.170e-23
Identity = 64/156 (41.03%), Postives = 83/156 (53.21%), Query Frame = 2
Query: 1445 EAVEGRKEVKSLSDGLKVQEKKLKTLEQEDSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQEEGKSKTLIGKWKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGAC 1912
            EA   RKE +  SD L   + K+  LE    +D+G+DG  +   DKC   K   Y Y+VCP+KDA Q EG S T +G+W+G +    DD   +              VF++G KCWNGP RSLRV + CGT+  L +V EP  C Y A   TP  C
Sbjct:  396 EAERIRKEFREASDKLSNTQSKVSDLENRLKQDFGKDGEFYSFYDKCFELKDKKYTYKVCPYKDATQVEGHSTTRLGRWQGFK----DDYTNM--------------VFEQGDKCWNGPERSLRVKMRCGTKLELRSVNEPSRCEYVAEFSTPALC 533          
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Match: A0A7S4DL14_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DL14_HETAK)

HSP 1 Score: 107 bits (267), Expect = 2.320e-23
Identity = 57/138 (41.30%), Postives = 76/138 (55.07%), Query Frame = 2
Query: 1526 QEDSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQEEGKSKTLIGKWKGI-EKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLRVALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRHAL 1936
            +E   DYG+D   W ++++C   K   YEY+VC +  A Q EG S   +G WKG  E  + D++            S + L+F+ G KCWNGP RS+RV L C   D L +V EPE C Y AVL TP AC  A+  A+
Sbjct:   19 KEGERDYGKDNEYWSIQNECFKFKAQQYEYQVCMYDRAKQIEGGSTVNLGNWKGFGEIDKPDNLHNY---------SEEGLLFEGGDKCWNGPQRSMRVLLVCSERDKLLSVEEPEVCAYRAVLATPAACDLARAGAV 147          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1408.3189.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KIQ9_9PHAE0.000e+087.89Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sp. ... [more]
D7G0Y2_ECTSI0.000e+083.05Glucosidase 2 subunit beta n=1 Tax=Ectocarpus sili... [more]
A0A1Y1VLU8_9FUNG1.630e-2526.80Glucosidase 2 subunit beta n=1 Tax=Piromyces finni... [more]
A0A812L8W4_9DINO6.320e-2556.07Glucosidase 2 subunit beta n=1 Tax=Symbiodinium sp... [more]
A0A0L0DN19_THETB2.520e-2445.65Glucosidase 2 subunit beta n=1 Tax=Thecamonas trah... [more]
A0A067LUJ6_9AGAM4.840e-2425.43Glucosidase 2 subunit beta n=1 Tax=Botryobasidium ... [more]
A0A4D8YZ59_SALSN8.560e-2425.99Glucosidase 2 subunit beta n=4 Tax=Salvia TaxID=21... [more]
A0A286UMG3_9AGAM1.120e-2326.55Glucosidase 2 subunit beta n=1 Tax=Pyrrhoderma nox... [more]
A0A2R6WUH1_MARPO1.170e-2341.03Glucosidase 2 subunit beta n=2 Tax=Marchantia poly... [more]
A0A7S4DL14_HETAK2.320e-2341.30Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1408contigEcto-sp13_S_contig1408:8124..17088 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeFungi
Stop1
Start1
Seed ortholog score134.4
Seed ortholog evalue1.9e-28
Seed eggNOG ortholog65672.G4TB33
Model size2352
KEGG koko:K08288
KEGG Pathwayko04141,map04141
Hectar predicted targeting categorysignal peptide
GOsGO:0000271,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005975,GO:0005976,GO:0006491,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009987,GO:0012505,GO:0016051,GO:0017177,GO:0019538,GO:0031974,GO:0032991,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0070013,GO:0071704,GO:1901135,GO:1901564,GO:1901576
Exons10
EggNOG free text desc.Low-density lipoprotein receptor domain class A
EggNOG OGs225NX@155619,38EUH@33154,3H2RR@355688,3NY9J@4751,3UYD7@5204,KOG2397@1,KOG2397@2759
Ec32 ortholog descriptionalpha-Glucosidase II, beta subunit
Ec32 orthologEc-23_001860.1
Cds size1995
COG Functional cat.T
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04091
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1408.3189.1prot_Ecto-sp13_S_contig1408.3189.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1408 8140..16747 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.4623723-UTR-Ecto-sp13_S_contig1408:8123..81391681462752.4623723-UTR-Ecto-sp13_S_contig1408:8123..8139Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1408 8124..8139 +
1681462752.5675468-UTR-Ecto-sp13_S_contig1408:16747..170881681462752.5675468-UTR-Ecto-sp13_S_contig1408:16747..17088Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1408 16748..17088 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.4727304-CDS-Ecto-sp13_S_contig1408:8139..84881681462752.4727304-CDS-Ecto-sp13_S_contig1408:8139..8488Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 8140..8488 +
1681462752.4811394-CDS-Ecto-sp13_S_contig1408:9727..98931681462752.4811394-CDS-Ecto-sp13_S_contig1408:9727..9893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 9728..9893 +
1681462752.4891713-CDS-Ecto-sp13_S_contig1408:10525..106451681462752.4891713-CDS-Ecto-sp13_S_contig1408:10525..10645Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 10526..10645 +
1681462752.497915-CDS-Ecto-sp13_S_contig1408:11926..120081681462752.497915-CDS-Ecto-sp13_S_contig1408:11926..12008Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 11927..12008 +
1681462752.509587-CDS-Ecto-sp13_S_contig1408:12615..128301681462752.509587-CDS-Ecto-sp13_S_contig1408:12615..12830Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 12616..12830 +
1681462752.5203037-CDS-Ecto-sp13_S_contig1408:13895..140131681462752.5203037-CDS-Ecto-sp13_S_contig1408:13895..14013Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 13896..14013 +
1681462752.5299587-CDS-Ecto-sp13_S_contig1408:14473..148121681462752.5299587-CDS-Ecto-sp13_S_contig1408:14473..14812Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 14474..14812 +
1681462752.5397062-CDS-Ecto-sp13_S_contig1408:15067..151781681462752.5397062-CDS-Ecto-sp13_S_contig1408:15067..15178Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 15068..15178 +
1681462752.548952-CDS-Ecto-sp13_S_contig1408:15910..160571681462752.548952-CDS-Ecto-sp13_S_contig1408:15910..16057Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 15911..16057 +
1681462752.5583875-CDS-Ecto-sp13_S_contig1408:16399..167471681462752.5583875-CDS-Ecto-sp13_S_contig1408:16399..16747Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 16400..16747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1408.3189.1

>prot_Ecto-sp13_S_contig1408.3189.1 ID=prot_Ecto-sp13_S_contig1408.3189.1|Name=mRNA_Ecto-sp13_S_contig1408.3189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=665bp
MAPAALCLLSTPPASALSLFGFGSSSDSAATEEARARAVALIRENAAGDE
FIPPASGVGRRDAARFAAARAAGKLVCTSSSGAGASTEISWDKINDNFCD
CPHDGSDEPGTSACSNGVFECANRGHRSVRLPSSRVGDGVCDCCDGSDEP
EGACKASCEEASEEWVAGLADRVVKVEQGTARRVGYAEAAVEAAAVRTQE
IEDVRLVTEGARDKLAQAKEALKALEEQETQQKNDKLAEAEKAVSERTRG
VLEDPERLAALAIAVASADEPSVTLETLCRSVLDGVDVGVALKDLLDEGK
KKDKDGSKKKGVPDAGEEDTVDAFLSAEDEDLEAGYDDHFGGLGGYEDMM
LDDDYMGYYGGGYDYGGGYGGDFGDAYEDDARFGGAAGGGAGGEANPVPK
VDSHAGVEGGGDREGNGDGGSPKVALDASDGGGNREVAAGEGKEEESEQP
EASEPKKKAAPFKPPREFKTFKFETPEAVEGRKEVKSLSDGLKVQEKKLK
TLEQEDSEDYGEDGALWPLKDKCITTKTGGYEYRVCPFKDAHQEEGKSKT
LIGKWKGIEKAQADDMRQLQQQHQQLVLSGDVLVFDRGQKCWNGPARSLR
VALACGTEDSLSAVTEPETCTYEAVLETPGACSSAQRHALIASVAGGAGE
GLRRDDGAGVRDEL*
back to top

mRNA from alignment at Ecto-sp13_S_contig1408:8124..17088+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1408.3189.1 ID=mRNA_Ecto-sp13_S_contig1408.3189.1|Name=mRNA_Ecto-sp13_S_contig1408.3189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8965bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1408:8124..17088+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTCTACTCGCGGTGATGGCTCCTGCCGCTCTCTGTCTGCTCTCGACAC CGCCAGCGTCCGCGCTCTCCCTGTTCGGCTTTGGATCATCGTCGGACAGC GCAGCGACGGAGGAAGCCAGGGCAAGAGCCGTGGCGCTGATCAGGGAGAA CGCTGCGGGAGACGAGTTCATTCCACCTGCCTCAGGAGTCGGGAGGCGAG ACGCGGCGAGGTTCGCGGCCGCGCGTGCCGCAGGGAAGCTTGTGTGCACC AGCAGCAGCGGAGCAGGAGCTTCGACGGAGATCTCGTGGGACAAGATAAA CGACAACTTTTGTGATTGTCCGCACGACGGGAGCGACGAGCCAGGGACCT CTGCCTGCAGCAACGGTGATTGCCCTTTGTTTACGCTGTTGACGGCGTAG TCAATGACGATCCCTCGCTCTCTATTTGTCTGTCCCTCTGTTGTGTAGAG CAACGATATCCTACAAGGCTGTATCTGCCTGTATGTGATGGGGGCTCCGC CGGTATCGCACGATGTCCAGCGTGTACGTGCAGCAGTAGTTGGGAGCGGA ATTGCACTGTTATCTATACATGCCATGAGAGTTGCATCCTAGGTGCAACG CGTTCCAGTTTGTAATCAAGCTCAGTTTCCCCAATTCTTCATGGCAGAGA GCTGACTGGTCTGGGAGAGTTTTTCCGCACGAGGGGGATTGCCATCCTCT CAGTATTTTGCTCCAGGAGTACCGCAAGAGGCGGAGAGGTGGCACCCCCC CCCTAGATCGACTTTTCAAAGCTCCATATTGCTCAAGAACCGAGCTTTTA CCAACACCAAGAATGTTCGTTTTGGAAACATCTCTTCGAGGGCTTTCCGT AGACGAATCGGGCTCTTTCCGGAACCCCTTGGTGGTCGAGCAATCGAGCT GTGTAAAGTCGGTCTTGGGCCGGTGTCATCTCTCCGACGCTTACGGAATA CCACCGTACATAAGTATACGGTACGGTAGAGCCAATCTTCGTTGTGGAGC ATTCGAGCTTTGAAGGTCGCCCAACGGGGTGTGCCATCTCTTCGCCTCTT GCAGTATTTGACATGTACCAGTCATTCTCACTAGATGATCTTCGTTGGCG GTACAAGGAGCACTGGTAAATGAAAATTTTGGTGTCATCCTTTGCACGTG CTCCCGATGGGGCGAGGATCGAAAGTACGCTTGACGTGTTTTACAATGCA CCGGGGAATGCGGTTTTGTGTAGGTCCAAAGACAGCAGTCGATGGAGAGC TACGAAATCTCTACTCTCGCGGCAAGCAAGTTGTCCTCATGTCGAGAAAC GACAGTGGAAGCGGGCACGTACACTGTAAGACCACGTGGACAGCAGTATG GACAGGTCTGGTTAAACTAGAGAGAGCTGGTATGAGGAAGTAAGAGACGA GAGGGGCCAAGGCGGACAGCCATCGACCATCGCGGTCAAGGAGGGAAGCA CCTCAAGAAAGCAGAGGAAGACTTCGAGAACAATCCAGTCGGAGGGATTA TCCCGCTGGCGTTGGGACACCACAGACATATAAAGTTGACAGATGAAAGA GGCGTGTTGGTTACCCAAGTCCCTCAGGAGACAAAACCGACATTGAACAC ACAGGTGTCTTCGAGTGCGCCAACCGCGGGCACCGATCGGTGCGGCTACC GTCGTCCAGGGTCGGGGACGGCGTGTGCGACTGCTGCGACGGGAGCGACG AGCCGGAAGGGGCCTGCAAGGCCTCCTGCGAAGAGGCTTCCGAGGAATGG GTGGCTGGCCTAGCCGACCGGTGCGTGTGATTCTTTCATGTATTCGCGTG TGTTTGTTGCTGGCATCGACCGATTGTTCATACGGCTACAAACGGTGAAC GTGCGATCGTTGTGATCTGGGACGCCGTGAGAGAGGCCGTAAGGGGTGGT CACGGGGGTGACTAAATTTGAGCTTATATCCGAAACCAAAGACAGATACG GTAGACGGCACGTTAAGAGAAATGCGTGTGTTATGTCTTGTCGCTTTTCG TTCACTGTGTTTTTTTGTGGTCTATATGGACCACGCCAACCCGCTGATCA AAACTAACAGGCTCCACTCAGTCCAATAATTTCCCGGGGGGGGGGGTACG AAAGATCATGCCTTCAAGTCCACAAAACTGCCTCGATCAGGGGCATGCCG AGGGGAATAGTACGACAGGGTCCAGTCTCCTTATCCAGAGAGGTTAGAGT GAGGGACAAGACGTGAAGCTAGCATGTGCCCGTTCTGTTCATGGTGGCAC ACCAACCGCGCTAACCCACAGGCCGCTGCACCAGCTAACCCCGGGTTTCA GCTATTACTCTACCAACAGCCAAAAAACAAGGTCATCTGGTGGCTCATGA AGACAGAGCAAATCGATAGACAGACACCCCGTACACCCCGACGTGAAACC AGGGTGGTGAAGGTGGAGCAGGGCACGGCACGAAGGGTGGGCTACGCTGA GGCGGCCGTTGAGGCTGCCGCGGTCAGAACTCAGGAGATCGAAGACGTAA GACTGGTCACCGAGGGCGCGAGGTACGTTTACGGAGTGTTTGCACCGGCA TGATTTTCGTAGAATACTGTACAAGGGGCGCCTCCGGAATGGACTGACCC ATCAGAGCATGAACGTGATGTCATGAAGGCGTGATGCAAGATGAGAGTAC AGCATTTGTTGGTGTGAACCAGCTGCCAGCTGCCATCATTGAAGTTTCCC AGGCTCGAAAAGCTCCCACAGCTGACGCGGTTTTGACTCGAAGAGCCCAG CGAACGTCAACGAACCAAGAAGAAAAAATTCGAATCTGTGCACAGTTTGT ACATACAATCGAAGAGAGACTACCCGTTCGAGATATATCCACAGCTGAAG GTTGAAGGGAATATGTGGAAGCCTTCACACAGTGATTTGTGCGCGGAGAC GCAAGGCGAGTTTTTTGTTGGGCATCAAGTTCGTTGACGAAGCCTTATGT AGATGTCGAAGATGGTTACTGACGAAACGGGGGGATTTTAATTAGGCTAG GGCGATGTTTTTTTTTCGGCCTCTTGTACATGCCTATACGTTCGACTGCG GTCCAGCTATCTTCGCGAAGCGAACGAAATAGAGCACACGTTATTCCAAA TCGACAGAGGGCGCCGAATCCTCCTCCGTCTCCGATAGGAAAAGTGTCCG GTGCAATCGAAGCGAGGGAGGGCGTTGCTACTTGTACGGTTGGGCAACCA GATCGCTGTGGTTGTGTTTGTTGTGTCCCTGCTGGTTGGTGCTCGTTTGC CGAAAGGCACATCTACATGATAATGTAGTTTATCCCACACACTCCCGTTG TGGTCTATCCCACACTCCCTTTGCGGTGTACCCCACATTCTCGTCGCGGT GTATGTCACACTCCCTTTGCGGTGTCTATTTATAGTTTGTGTACGGTATC GTGTTCTGGAGCCACACCATGCGCACGAGGTTCCTGGATGTACCTTTTTT CAACACTTTTTGTATCAGCGCTGACAGCATACCTGCCTAGTAGGAGCTAG CTCCAATTCGCAGCCACACGGATGCCCTGCATCCAAACTGAGAACATGCC ATTTTTGACAATATACAATGCATGCTCCCGCACTATTGGGTGCGCTGTGT ATGATATACATGCGCATGTTGCTGCGCTACTGAGTACGTCATGCGGTTCT CCTTTTTTCGTTCCCCCGCAAGGTGCGGGATTCTCCAGTCTCATCTCTCT TTGTTGGAAGATATCACCATCCTCGTTTTTTTTTCCCTCTCTCTCGTGTG TGTGGCGGTCGACGGCCGCTCCGTTCGCATGGAATGGGTTCCCGTTGGGG CAGGGATAAGCTGGCTCAAGCGAAGGAGGCGCTGAAAGCTCTCGAGGAGC AGGAAACCCAGCAGAAGAACGATAAGCTCGCTGAGGTATGAGCCATGGCA GAGATATGAAACTTGGTGATGGGTCATGTTTTGCAACGGTATCGAGAGAT GTGTTGCGAAAACCGGGGCAGTTTAATTTCGTGCGACATGACAAGCGGGC AAACGACCACTTCGTTATTGGAGGAGTGGGAAGTGTGTCGGTGTTGATGA CACGTCAACCCTCCCCTCCCGCGTCCGTGATTCGGGAAGAACATGACCTG TAATTGACTCCTACGATGATGTTTGTAGACGTAATGTTTTTTCTTGTCTC TTTTCGTGCCGTTGTCGTCCCATTTCTCGAGGCAGAGAGGGCCGTGTCCA AGATGAGGAATTCGAGCCCGCGTGGTTTCTCAATGATGATAATGATTGTA GTTAAGAGACGCGGTTTCAACAAGGCTCGGGACTCTTTGTTCCGATCGTA ATAATAAACCCTACCGGCCACGTTCACTTCTTCACCTGCTAACGTCGTCC CGCCTGGCTCAATGATGATAATGATCGTAGTTAGAGACGCGGTTTCAACA AGGCTCGGGACTCTTTGGTCCGATCGTAATAATTAACCCTACCAGCCACG TTCACTTCTTTACATGCTAACGTCGTCCCGCCTGGCCTTCAGGCAGAGAA GGCGGTGTCCGAGAGGACGCGAGGCGTGCTGGAGGACCCCGAAAGACTGG CGGCCTTGGCCATTGCCGTCGCTTCGGCGGACGAGCCGTCGGTGACCCTG GAGACGCTGTGCCGATCGGTGCTGGACGGGGTGGACGTCGGCGTGGCGCT GAAGGATCTGCTGGACGAGGGGAAGAAGAAGGACAAGGACGGCAGCAAGA AGAAGGGGTGAGAGAAGGGGTGAGAGAAGGGGTGCAAATGCCGAAGAAGG GGAGGGGGGGGGGCAGAAGAGGGTACAGAGAGATGCAGAAGAGGGAAAGA TGCAGAAGAGGTTATGGCAGCAAGGGGTGAGAGAAGGGGTGCAATGCCGA AGAAGGGGAGGGGGGGCGGCAGAAGAGGGTACAGAAGGATGTAGAAGAGG TTATGGCAGCAAGGGGTGAGAGTGGGGGTACACTGCCGAAGAAAGAGTGG CAGAAGAGGGTACAGAAGGATGTAGAAAGGTTACGGTATCAAGGAGGGGT GACAGAATGGGTGCAATGCCTAGGAAGGGGAGGGGGCGGACAGAAAAGGG TGCAGGTAGATGTAGAAGAGGGAGCAACAAGGGGTGAGAGAAAGAATACA ACGCCGAAGAAAGGAGGACAGAAAAGGGTGCCTCAGGATGTAGAAGAGGT ACATGGCAGCAAGAAGGGGTGAGAGAAGGGATACAAAGCCGAGAAGGGGG GGGCAGAGGAGGGTACAGAAGAACGTAGAAGGGGTACATAGCAGCAAGAA GGTGTAAGAGAAGGGGTACAATGTCGAAGGAGGGGGGGACAGAAGAGGGT ACAGAAGGATGTAGAAGAGGTACATGAACCGAAATGACTAGAGGCTGCAC CACCATCAACTTGCGCCGCTACAAACTTTGTTCAGCGTCGCGCGGATCAG AGGGTTGTAACGGGGTGCTTACGGTATCAAAGAGAACGAGATGATAATCC AACTATTTTTTAACACGGGGATCGGAGAGTTGACCAGGGGATATGCCCAC ACAAGCAAGATTAACAAGTGAGCGCACGATGGTGGTGTCAACAGTATATC CCGTAATTTATCACGGTTTGTTGTGTAAACCTGAGCATCAGCATGTTTCA CGAAGCAGAACCTCCCCCCGCCCACCCCCGACCGGTACGACACGCCCCTA ACGGGTTATCATGCTACGACATTTTTTTTTTAACACAGAGACATGGACTG TTGTGTCCGTCTGTCTGATGCTGGGTGAACAATAATCCGTTTTCCTTGGG GTCGAACGTTTCCCCTCGATAGAGTGCCTGACGCTGGCGAGGAGGATACA GTCGACGCATTTTTGTCGGCCGAAGACGAGGATCTGGAGGCCGGCTACGA CGACCACTTCGGAGGGTTGGGCGGTTACGAGGACATGATGGTAAGATACG TGAGGTTTGGCGGACCCAATGATGTCGATGAAGGTAGAGGGGGAGCAGCG AAGGGAGTAGAGGGGAGGAGGGGTGGGGGGACAGAGCAAGATGTAGAGAG AGCGAGGGGGGGCGAGGAGAGAATGTGAGAGGGAGCGAGGAAAGGTAAAT CAGAAGTGTGTCCTGTAGCATGAACACTATCTTGTTCGGGGTGGGAAAGA GGACAACACAGGGAGGGAGGGAGAGGGGGTAAGGGGTTGACACGCCAGCC TTCAAGACCCATTGCAACAACGGTCCCAATACCAGAGGCAGAAAGCAAAC AGTAGACAGTATCGTTAGACCCCTATGGTGGGGTTATTTTTATCGGCACC CGTCGGGAGGCTTGTCACCGTTACAACCACCATGGCAAGCTGCACGTCAA TCAGATCGTGCTTGCGTACCCTCTCTGCCCCCCCCCCCCTGCTGTCCAAG CTCGACGACGACTACATGGGGTACTACGGGGGCGGCTACGACTACGGCGG TGGCTACGGCGGAGATTTCGGAGACGCATACGAAGACGACGCGCGATTCG GCGGAGCCGCTGGCGGGGGCGCTGGGGGCGAAGCTAACCCCGTGCCGAAA GTGGACTCGCACGCTGGGGTGGAAGGAGGCGGTGATAGAGAGGGGAATGG GGATGGCGGAAGCCCGAAGGTCGCGCTGGACGCAAGCGACGGGGGGGGGA ACCGTGAGGTCGCGGCAGGGGAGGGTAAGGAGGAGGAGTCGGAGCAGCCG GAGGCGTCGGAGCCGAAGAAGAAGGCTGCGCCGTTTAAGGTGTGAGCGCT GTCACTGTGTGTGATCTACTTTATGTGCGTTTGTTTGTGCCACTTATTCC GGCGCCAGTTTTGGATGAGCTTGCCCGTTGAACGAAAAATGCTTTGGAGA TTTGGAAAGCGGGATCCGGACCCAGCTGTGCCACAAGTCTCCCCCCTTTC GCTCAAGTAAATTTAACGATCGATCTGTTCTGAGGCAAGCAACAAAACTC GTACCCCTTGCCCCTCTTCCCGGTCATACATCTATTTTCTGCAGCCTCCA CGCGAGTTCAAAACCTTCAAGTTCGAGACACCAGAGGCAGTGGAGGGGAG GAAGGAGGTGAAAAGCCTCAGCGATGGTTTGAAAGTCCAAGAGAAAAAGC TCAAGGTATGGACAGGAGAGAAAGTACATGACTGCCATGAAACTTGAGTC ACGGCCAAACGTGGAAGTGGTTGTTGCTCAATACGAGATACTGGATTTGT TTCACGGCTGATTGGAGCCACGCTGGAGCCACGCTGTTATTACGAGAGGG GATTTAGGCTGCGGCAGTGTGTCGGGGATAAACAACGGTTGCGTCTTGTT TGGTGTGCTACCGCCCATAAAGCTAGCAAATAAGGGCTGCATGGTGTGTG GAAATTTAGCGCGTGGCTTTCGTTTCGTCGGCTGTCCGCTAGTTGCTGCT GCGGTCTGGTGTGGAATACACGGCGTGTGAGGTTTGCTTCGGTGGTTGCT ACTCCGCCTCTGGGAGCCATTCCGGAGCACGATTCCGCGGCGGACCGTGT TACATCGACTGTGGCTTTCAGTGACGTTATATCTAGGCCAAGTGCAGACC TGCATCGTCGAGCTATACGCCATTATTTTTTTTCTACCCTCTGCGGCACA CCCTGTGTGTCCACAAACGCATTTCCGCATTTTCTCGCAATCTCTTGACT TTTTTTCAACCCGTTTTTTTTTCTTCCTTTTCTGCGTTGAGCGTCATCTA CAGCAGTCTGCAATTCGTTCGCCCAGTTTTTTTTTGTTTTTTTGCTGTTG TTCGTTATTTTCCACACTCAGTGCTGGAATTTTGTTCACCCCGGTTGTTT TTTTTCCGTCTGCGTCAACTTTTTTTTTTGTGCCCAGACGTTGGAACAGG AGGACTCGGAGGACTACGGCGAGGACGGCGCGCTGTGGCCCCTCAAGGAC AAGTGCATCACCACGAAGACGGGGGGTTACGAGTACCGAGTGTGTCCCTT CAAGGATGCCCACCAGGAGGAGGGAAAGTCCAAGGTATGTATCTGGTCTG TTTGGTGGTCGTGGTGGTGTTTTTCCGTCCCATCATGTTCGTGGTGGTTT TTACTGTGGTTTTTTCTTGTTTCGTCCAATCGTGTTCGTGGCCGTGAATG GTGGTTTTTTATTTTTCTGTCCCGTCGTGTTTGTGGCGGTTGTCCGATTA TTTTGTTTCCTTTTCCGTCCCATCGTGTCGTGTGCAAAGAGCAGCATCAT TCCAGTGCTTTTGGCGGTCGATTCGGCATGCCCCTGTCTGCCTCTCTCTT GGCGTCCTAGTCCGACCCCCACCCAACCGCCATCTGTCGTTCCTCCGCCG GAACGTGAACGTCAAAACATTTTCAGACGCTGATAGGGAAGTGGAAGGGG ATCGAGAAAGCCCAGGCGGACGACATGCGGCAGCTGCAACAGCAGCATCA GCAGCTGGTCCTGAGCGGCGACGTGCTCGTCTTCGATAGGGGGCAAAAGT GCTGGAACGGGCCCGCCCGCAGCCTGCGGGTGGCGCTGGCCTGCGGTACG GAGGACTCCCTCTCCGCGGTGACGGAGCCGGAGACTTGCACATACGAGGC GGTGTTGGAAACCCCGGGGGCGTGTTCCTCCGCCCAGAGGCACGCCTTGA TTGCTAGTGTAGCAGGGGGAGCGGGAGAGGGCCTTAGAAGGGATGATGGT GCGGGGGTGAGGGATGAGTTATAGTAGCCGGAGGGGAGGAGAGCTTTGCC TAGTGTTGTCTGTCTGCGAAGTGTTTGGTTTTTCAATCTTCGACGATTGT TCGTTGAGGACTTTTTGTTTTCTGCGTGCGTGTTTCGGGTTTCGCGTGTT GTACCGTTGGTTTTGGTTGTTTGTTTCGTGTTGTTTTGTTCCTTTTTCTT TTCGTCCCGGTGACATGTAGTAGCTATCGTGCGTGGTCTTGCGAGTTGTT TCTGCGCATGGACGCACGCCGTTGTGTGATATAAAAGTGTTGGTTTGCTT TCCGTAGTTTATCCGGTGAATCCAGAGGAAAATTGTCTATCAGACGCGAT CAGACCAAAGGGACA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1408:8124..17088+

>mRNA_Ecto-sp13_S_contig1408.3189.1 ID=mRNA_Ecto-sp13_S_contig1408.3189.1|Name=mRNA_Ecto-sp13_S_contig1408.3189.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1995bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1408:8124..17088+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCCTGCCGCTCTCTGTCTGCTCTCGACACCGCCAGCGTCCGCGCT
CTCCCTGTTCGGCTTTGGATCATCGTCGGACAGCGCAGCGACGGAGGAAG
CCAGGGCAAGAGCCGTGGCGCTGATCAGGGAGAACGCTGCGGGAGACGAG
TTCATTCCACCTGCCTCAGGAGTCGGGAGGCGAGACGCGGCGAGGTTCGC
GGCCGCGCGTGCCGCAGGGAAGCTTGTGTGCACCAGCAGCAGCGGAGCAG
GAGCTTCGACGGAGATCTCGTGGGACAAGATAAACGACAACTTTTGTGAT
TGTCCGCACGACGGGAGCGACGAGCCAGGGACCTCTGCCTGCAGCAACGG
TGTCTTCGAGTGCGCCAACCGCGGGCACCGATCGGTGCGGCTACCGTCGT
CCAGGGTCGGGGACGGCGTGTGCGACTGCTGCGACGGGAGCGACGAGCCG
GAAGGGGCCTGCAAGGCCTCCTGCGAAGAGGCTTCCGAGGAATGGGTGGC
TGGCCTAGCCGACCGGGTGGTGAAGGTGGAGCAGGGCACGGCACGAAGGG
TGGGCTACGCTGAGGCGGCCGTTGAGGCTGCCGCGGTCAGAACTCAGGAG
ATCGAAGACGTAAGACTGGTCACCGAGGGCGCGAGGGATAAGCTGGCTCA
AGCGAAGGAGGCGCTGAAAGCTCTCGAGGAGCAGGAAACCCAGCAGAAGA
ACGATAAGCTCGCTGAGGCAGAGAAGGCGGTGTCCGAGAGGACGCGAGGC
GTGCTGGAGGACCCCGAAAGACTGGCGGCCTTGGCCATTGCCGTCGCTTC
GGCGGACGAGCCGTCGGTGACCCTGGAGACGCTGTGCCGATCGGTGCTGG
ACGGGGTGGACGTCGGCGTGGCGCTGAAGGATCTGCTGGACGAGGGGAAG
AAGAAGGACAAGGACGGCAGCAAGAAGAAGGGAGTGCCTGACGCTGGCGA
GGAGGATACAGTCGACGCATTTTTGTCGGCCGAAGACGAGGATCTGGAGG
CCGGCTACGACGACCACTTCGGAGGGTTGGGCGGTTACGAGGACATGATG
CTCGACGACGACTACATGGGGTACTACGGGGGCGGCTACGACTACGGCGG
TGGCTACGGCGGAGATTTCGGAGACGCATACGAAGACGACGCGCGATTCG
GCGGAGCCGCTGGCGGGGGCGCTGGGGGCGAAGCTAACCCCGTGCCGAAA
GTGGACTCGCACGCTGGGGTGGAAGGAGGCGGTGATAGAGAGGGGAATGG
GGATGGCGGAAGCCCGAAGGTCGCGCTGGACGCAAGCGACGGGGGGGGGA
ACCGTGAGGTCGCGGCAGGGGAGGGTAAGGAGGAGGAGTCGGAGCAGCCG
GAGGCGTCGGAGCCGAAGAAGAAGGCTGCGCCGTTTAAGCCTCCACGCGA
GTTCAAAACCTTCAAGTTCGAGACACCAGAGGCAGTGGAGGGGAGGAAGG
AGGTGAAAAGCCTCAGCGATGGTTTGAAAGTCCAAGAGAAAAAGCTCAAG
ACGTTGGAACAGGAGGACTCGGAGGACTACGGCGAGGACGGCGCGCTGTG
GCCCCTCAAGGACAAGTGCATCACCACGAAGACGGGGGGTTACGAGTACC
GAGTGTGTCCCTTCAAGGATGCCCACCAGGAGGAGGGAAAGTCCAAGACG
CTGATAGGGAAGTGGAAGGGGATCGAGAAAGCCCAGGCGGACGACATGCG
GCAGCTGCAACAGCAGCATCAGCAGCTGGTCCTGAGCGGCGACGTGCTCG
TCTTCGATAGGGGGCAAAAGTGCTGGAACGGGCCCGCCCGCAGCCTGCGG
GTGGCGCTGGCCTGCGGTACGGAGGACTCCCTCTCCGCGGTGACGGAGCC
GGAGACTTGCACATACGAGGCGGTGTTGGAAACCCCGGGGGCGTGTTCCT
CCGCCCAGAGGCACGCCTTGATTGCTAGTGTAGCAGGGGGAGCGGGAGAG
GGCCTTAGAAGGGATGATGGTGCGGGGGTGAGGGATGAGTTATAG
back to top