mRNA_Ecto-sp13_S_contig1408.3188.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1408.3188.1
Unique NamemRNA_Ecto-sp13_S_contig1408.3188.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: D7G0Y1_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y1_ECTSI)

HSP 1 Score: 197 bits (502), Expect = 2.020e-56
Identity = 96/101 (95.05%), Postives = 97/101 (96.04%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIGTETNEITNNEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 342
            MGQKVGKASF DVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIGTE NE+ N EFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK
Sbjct:    1 MGQKVGKASFGDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIGTEANEVANKEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 101          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: A0A7S2RFV1_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RFV1_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.610e-14
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIGTETNE----ITNNEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 342
            MGQ +GKA   +  +P VNL   S+  LW+ FN  A G+G++ +   ++  A+  S+     +    +T    F ALDTDKN L+D LE + TL MLSG+   +K
Sbjct:    1 MGQLLGKARLREAAEPLVNLDGTSVYVLWESFNDVAEGFGINVEELTEIISALQNSVFAHAPKQVILVTVERMFEALDTDKNMLIDSLEALVTLCMLSGIELREK 105          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: A0A2R5G5S9_9STRA (Echinoderm microtubule-associated protein-like 1 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G5S9_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 1.530e-13
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIGTETNEITN----NEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 342
            MGQ +GKA   +  +PF NL  + +  LW+ FN  A G+G++     ++C A+  +      +          F ALDTD+NNLVD LE + TL MLSGM   DK
Sbjct:    1 MGQLLGKARLREAAQPFANLDQQGVYLLWEAFNDVAEGFGINVDELTEICMALQNTTFMHAPKQVILKIVESVFTALDTDQNNLVDSLEALVTLCMLSGMELRDK 105          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: A0A225W9G4_9STRA (Microtubule-associated protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225W9G4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 7.260e-13
Identity = 37/104 (35.58%), Postives = 61/104 (58.65%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIGTETN---EITNNEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 342
            MGQ  GKA++      F+NL +  +  LW+ FN  A G+G++   F ++C++M +++    +   +  ++  F ALDTD+N LVD LE + T+ M+S MP   K
Sbjct:    1 MGQLQGKATYVKATTSFLNLSERDVNKLWESFNDVAEGFGLNQDEFVEICRSMQQTLEIHAHSEMDHLSSALFMALDTDENGLVDALEFLGTIAMMSTMPIPQK 104          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: A0A0N7L8J5_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L8J5_PLAHL)

HSP 1 Score: 72.8 bits (177), Expect = 1.350e-12
Identity = 39/105 (37.14%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIGT----ETNEITNNEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 342
            MGQ  GKA++ D    F+N  +  +  LW+ FN  A G+G++   F ++CQ M +S+      E ++++    F ALDTD+N LVD LE + T+ M+S M    K
Sbjct:    1 MGQLQGKATYLDASTSFLNASERDVNKLWEGFNDVAEGFGLNRDEFVEICQLMQRSLDIYAHDEMDQLSG-ALFTALDTDENGLVDALEFLGTMAMISAMSTSQK 104          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: A0A3R7FYN1_9STRA (EF-hand domain-containing protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7FYN1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 8.730e-12
Identity = 38/104 (36.54%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIGTET-NEIT--NNEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 342
            MGQ  GKA++     PF+N  +  +  LW+ FN  A G+G++     ++C++M  ++     NE+   +   F ALDTD+N LVD LE + T+ M+S MP   K
Sbjct:    1 MGQLQGKAAYLKATTPFLNASERDVNKLWECFNDVAEGFGLNQDELVEICRSMQPTLEIHARNEMDQLSTGLFTALDTDENGLVDALEFLGTMAMMSAMPIPQK 104          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: G4ZD40_PHYSP (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=G4ZD40_PHYSP)

HSP 1 Score: 70.1 bits (170), Expect = 1.190e-11
Identity = 37/105 (35.24%), Postives = 61/105 (58.10%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIG----TETNEITNNEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 342
            MGQ  GKA++     PF+N  +  +  LW+ FN  A G+G+      ++C++M +++     +E ++++    F ALDTD+N LVD LE + T+ M+S MP   K
Sbjct:    1 MGQLQGKAAYLKATTPFLNASERDVNKLWECFNDVAEGFGLKQDELVEICRSMQQTLEIHARSEMDQLSA-ALFTALDTDENGLVDALEFLGTMAMMSAMPVPQK 104          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: A0A1V9YLP3_9STRA (Microtubule-associated protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YLP3_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 1.950e-10
Identity = 37/100 (37.00%), Postives = 54/100 (54.00%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIG----TETNEITNNEFFAALDTDKNNLVDGLELMSTLGMLSGM 327
            MGQ  GKASF     PF+N+ ++ +   W+ FN  A G+G++      +C  +  +      TE   IT    F A+DTD+N LVD LE + +L +LS M
Sbjct:    1 MGQLHGKASFVQAALPFLNISEKDVNKCWESFNDVAEGFGINKAELIDICSPLQDTFEIKAKTEMERITA-LLFEAMDTDENGLVDALEFLGSLALLSAM 99          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: H3HDC2_PHYRM (EF-hand domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HDC2_PHYRM)

HSP 1 Score: 65.9 bits (159), Expect = 3.590e-10
Identity = 35/105 (33.33%), Postives = 60/105 (57.14%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIG----TETNEITNNEFFAALDTDKNNLVDGLELMSTLGMLSGMPREDK 342
            MGQ   KA++      F+N  +  +  LW+ FN  A G+G++     ++C++M +++     +E ++++    F ALDTD+N LVD LE + T+ M+S MP   K
Sbjct:    1 MGQLQSKAAYLKATTAFLNASERDVNKLWECFNDVAEGFGLNQDELVEICRSMQQTLEIHARSEMDQLSG-ALFTALDTDENGLVDALEFLGTMAMMSAMPIPQK 104          
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Match: A0A8J5J1R4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5J1R4_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 3.600e-10
Identity = 38/108 (35.19%), Postives = 62/108 (57.41%), Query Frame = 1
Query:   40 MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLCQAMAKSIG----TETNEITNNEFFAALDTDK---NNLVDGLELMSTLGMLSGMPREDK 342
            MGQ  GKA++      F+N  +  +  LW+ FN  A G+G+S     ++C++M +++     +E ++++    FAALDTD+   N LVD LE + T+ M+S MP   K
Sbjct:    1 MGQLQGKATYLKCTTSFLNASERDVNKLWESFNDVAEGFGLSQDELVEICRSMQQTLEIHARSEMDQLSA-ALFAALDTDEVMENGLVDALEFLGTMAMMSAMPIPQK 107          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1408.3188.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7G0Y1_ECTSI2.020e-5695.05N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A7S2RFV1_9STRA2.610e-1438.10Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A2R5G5S9_9STRA1.530e-1339.05Echinoderm microtubule-associated protein-like 1 n... [more]
A0A225W9G4_9STRA7.260e-1335.58Microtubule-associated protein n=1 Tax=Phytophthor... [more]
A0A0N7L8J5_PLAHL1.350e-1237.14Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A3R7FYN1_9STRA8.730e-1236.54EF-hand domain-containing protein n=4 Tax=Phytopht... [more]
G4ZD40_PHYSP1.190e-1135.24Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A1V9YLP3_9STRA1.950e-1037.00Microtubule-associated protein n=1 Tax=Achlya hypo... [more]
H3HDC2_PHYRM3.590e-1033.33EF-hand domain-containing protein n=1 Tax=Phytopht... [more]
A0A8J5J1R4_9STRA3.600e-1035.19Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1408contigEcto-sp13_S_contig1408:5519..7753 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score199.1
Seed ortholog evalue9.6e-49
Seed eggNOG ortholog2880.D7G0Y1
Model size342
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Cds size303
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.402623-CDS-Ecto-sp13_S_contig1408:5518..55901681462752.402623-CDS-Ecto-sp13_S_contig1408:5518..5590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 5519..5590 -
1681462752.4137883-CDS-Ecto-sp13_S_contig1408:5765..59381681462752.4137883-CDS-Ecto-sp13_S_contig1408:5765..5938Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 5766..5938 -
1681462752.4235268-CDS-Ecto-sp13_S_contig1408:7656..77141681462752.4235268-CDS-Ecto-sp13_S_contig1408:7656..7714Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1408 7657..7714 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.432962-UTR-Ecto-sp13_S_contig1408:7714..77531681462752.432962-UTR-Ecto-sp13_S_contig1408:7714..7753Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1408 7715..7753 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1408.3188.1prot_Ecto-sp13_S_contig1408.3188.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1408 5519..7714 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1408.3188.1

>prot_Ecto-sp13_S_contig1408.3188.1 ID=prot_Ecto-sp13_S_contig1408.3188.1|Name=mRNA_Ecto-sp13_S_contig1408.3188.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=101bp
MGQKVGKASFEDVVKPFVNLPDESIRALWQEFNLCATGWGVSPKFFNQLC
QAMAKSIGTETNEITNNEFFAALDTDKNNLVDGLELMSTLGMLSGMPRED
K
back to top

mRNA from alignment at Ecto-sp13_S_contig1408:5519..7753-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1408.3188.1 ID=mRNA_Ecto-sp13_S_contig1408.3188.1|Name=mRNA_Ecto-sp13_S_contig1408.3188.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2235bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1408:5519..7753- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCAGTAGTGCCCGGCACGAGCAAACGGAGCGGTCAACATGGGCCAAAA AGTTGGGAAGGCCAGCTTCGAGGATGTGGTCAAGCCTTTCGTGAACCGTG AGTGCTCTGTGTAGTCTGTGGTTGAATTGAAACGCAATACACATATTGTG CGGTATCTCACGAAATGCGTGGGATGACGGAAGTGATGTCCCCTTGTGAT CCTTCAAGATGTGGAACCAAACAAAACATATACGAGTACAGATTTCAAGT GGTGTTCTGTAGTACAGACGAAGACATCGTAAATCTCTAGGGGGGTCTGC TTGATTGCTCCGTCGCAAATCGAGTTTGCATTCAGTTCACCAGGAAAATA CAAACACAGAAAGACTACCCATTCGAGATAAGACCACAGCAGTCGAACGG GGTGTGTTGGAGTCTTTACAGTGAATGGAGGGAAACCAGCTGGGTACTGG GCTTATTTGGAGTCTATTGAAGCCTTTTCACTGAAAATTTACGATCGTTG ATGCCAGCAGGTGCAAATTACAAAATTACCTGTATACAAATACCACAAGA CATCTCCGCCGTAGCGTTCTCTACCTACGGGGTCAACGAAAAAACATCTG GGAGAAACCCTCCGTTGTGTCGTGTGTTGTAATATTCTGCCTTCACAGTA ACACGTCGCAGTGTCTTTTGACAACTTGCTGGATTTAATTTGTTTCTGTT GTCGATCGACGATACACGGCAAAACTTCCAAATAAATCGAGACGGATCAA CTCCCCTGTGTCTTGCTCGGCTGGGTGACGCGTTTAGCCCCTGTCGGCTC GTTGAAGCCATCCATCTCGATAGCATCCACATTGTAGAACATCAGCAGCG CAGGTCATCATCAGCGGCACATATCGACAAGAAGTGGTGCAGGCATCTCA ACTGGTACGACCACAATAAACATGCTGGAAAATGTTTCCCACCTGGAATA GCGTGACAGCAGGAAGGGTTCTTGTTTGCCATTGGTCACGATGAAGATCA GCTTGGTGCACAACTCGCTTCAACCATTCCGTCTTGCCTCATTTACTGTC GGAGATGGCTACCAAGCAACATGGCACAACGGCAGGGTCCGAATGCCGCT GCTCCGAACTCAAACGCGAGGTCCTGCGGATAGGTTCAAAATAACAATGC ACCAAAAGCTAATTTTCGACCAAAATTTCATTGCGTAGACTATGGGTTTT TCTCTTCCCGCTACACAGCAGTAGAAGGCAGGGATTTCAGAGAGGTTCCT GAAATTCGGCACATGATGGCGTAGATACGGCGGCCGTGTTTACCACCTAC CCGTGGCCGAGGAAAGTTTAACTTTCATGATGAGAAGGACACGTCAAAAT ATTGAAACATTCGTCACAGTGGGGCGTGCAACATGCGCCAATAGACGTAC GTAAGACTTGATTACGGAGATTTTTTTTATCAACATAGTGGTTTTCTGTT TTCTATATAGGGAACCACAGCCCTGTTGCCAGAGCTGTGCAACCATGCCA CCTTCACAATACGATCGATGATTGATGCGAGTACTCGCTGCCGTACGGCA CTGCACAGCCAAGAAGACTGCCTCATGTATTACGAAAATCCTAACACTTC AGCCTACGTTAGCTTGGGTTCTACACCTCAATGAAGTTAAATCTCGTTTC CGAACTCTTCTTATCTTCAGTACTCACATACATGCATGTTCTCATGGTCT TGTAGATTTCCACGAGCCATTTTTTCAGCTACTCTGGCTTATACATTCGT AATCGTCAATGCCGTGTCGCGCTACGTATGCTCCTATCATTTTCCTACGT GCATGGTCATTCAAGTTCCTGATGAGTCCATCCGAGCGCTATGGCAGGAG TTCAACTTGTGCGCCACTGGCTGGGGGGTGAGCCCCAAGTTCTTCAACCA GCTGTGCCAGGCGATGGCTAAGTCGATAGGCACTGAGACGAACGAGATCA CCAACAACGAGTTTTTCGCTGCTCTCGACACAGACAAGGTGAGATATTAC GCCTCCTGCGGACCCACAAACTACACTTAGTTGGAGTGTATTTCCTCGCC AGGGTACTTACTTTCAAGTCGCCGGGTAAACGTCTTTGTACGCCTTTCTT ATCGACCGCTGTTCCGGCGTGCTTTTATTGCCTTTTCAAACGTGCAAACT TGAACCATTCCAGAACAACCTCGTCGATGGCTTGGAGCTCATGTCCACGC TTGGGATGCTCTCGGGGATGCCGCGCGAAGACAAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1408:5519..7753-

>mRNA_Ecto-sp13_S_contig1408.3188.1 ID=mRNA_Ecto-sp13_S_contig1408.3188.1|Name=mRNA_Ecto-sp13_S_contig1408.3188.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=303bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1408:5519..7753- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCCAAAAAGTTGGGAAGGCCAGCTTCGAGGATGTGGTCAAGCCTTT
CGTGAACCTTCCTGATGAGTCCATCCGAGCGCTATGGCAGGAGTTCAACT
TGTGCGCCACTGGCTGGGGGGTGAGCCCCAAGTTCTTCAACCAGCTGTGC
CAGGCGATGGCTAAGTCGATAGGCACTGAGACGAACGAGATCACCAACAA
CGAGTTTTTCGCTGCTCTCGACACAGACAAGAACAACCTCGTCGATGGCT
TGGAGCTCATGTCCACGCTTGGGATGCTCTCGGGGATGCCGCGCGAAGAC
AAG
back to top