mRNA_Ecto-sp13_S_contig14076.3184.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14076.3184.1
Unique NamemRNA_Ecto-sp13_S_contig14076.3184.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14076.3184.1 vs. uniprot
Match: D8LFN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFN7_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 6.570e-31
Identity = 55/65 (84.62%), Postives = 60/65 (92.31%), Query Frame = 1 
Query:    1 INDMAVAHHQASVPFLESMRESVDEVLSGGSMADDVAIGAYLGMIEHAKSFKDVLCSKDMDVILS 195
            +NDMAV  HQA+V FLESMRES+DEVLSG SMADDVA+GA+LGMIEHAKSFKDVLCSKD DVILS
Sbjct:    2 VNDMAVVDHQANVCFLESMRESIDEVLSGSSMADDVALGAHLGMIEHAKSFKDVLCSKDTDVILS 66
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BLAST of mRNA_Ecto-sp13_S_contig14076.3184.1 vs. uniprot
Match: A0A6H5JIG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG7_9PHAE)

HSP 1 Score: 83.6 bits (205), Expect = 2.730e-17
Identity = 43/61 (70.49%), Postives = 49/61 (80.33%), Query Frame = 1 
Query:   10 MAVAHHQASVPFLESMRESVDEVLSGGSMADDVAIGAYLGMIEHAKSFKDVLCSKDMDVIL 192
            MA A  QA+V FLE MRES+D VLS GSMAD V + A LG+I+HAKSFKDVLCS+D DVIL
Sbjct:    1 MAFADQQANVRFLERMRESIDGVLSDGSMADGVELEACLGIIQHAKSFKDVLCSEDTDVIL 61
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BLAST of mRNA_Ecto-sp13_S_contig14076.3184.1 vs. uniprot
Match: A0A6H5JS69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS69_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.710e-12
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 1 
Query:    4 NDMAVAHHQASVPFLESMRESVDEVLSGGSMADDVAIGAYLGMIEHAKSFKDVLCSKDMDVIL 192
            +D A+A  QA++ FLE +RES+D VLS GS+ D VA+GA   MIE+A+SFK VL S+D DVIL
Sbjct:    5 DDNALADDQANLRFLERVRESIDVVLSSGSVEDGVALGACSEMIEYARSFKHVLGSQDTDVIL 67
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14076.3184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFN7_ECTSI6.570e-3184.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIG7_9PHAE2.730e-1770.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS69_9PHAE1.710e-1258.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14076contigEcto-sp13_S_contig14076:4283..4477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size195
Hectar predicted targeting categoryother localisation
Exons1
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.2237563-UTR-Ecto-sp13_S_contig14076:4282..42911681462752.2237563-UTR-Ecto-sp13_S_contig14076:4282..4291Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14076 4283..4291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.2323034-CDS-Ecto-sp13_S_contig14076:4291..44771681462752.2323034-CDS-Ecto-sp13_S_contig14076:4291..4477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14076 4292..4477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14076.3184.1prot_Ecto-sp13_S_contig14076.3184.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14076 4292..4477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14076.3184.1

>prot_Ecto-sp13_S_contig14076.3184.1 ID=prot_Ecto-sp13_S_contig14076.3184.1|Name=mRNA_Ecto-sp13_S_contig14076.3184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MAVAHHQASVPFLESMRESVDEVLSGGSMADDVAIGAYLGMIEHAKSFKD
VLCSKDMDVILS
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mRNA from alignment at Ecto-sp13_S_contig14076:4283..4477+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14076.3184.1 ID=mRNA_Ecto-sp13_S_contig14076.3184.1|Name=mRNA_Ecto-sp13_S_contig14076.3184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14076:4283..4477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTAACGACATGGCGGTCGCGCATCACCAGGCGAGCGTTCCATTCTTGGA
GAGCATGAGGGAAAGTGTCGATGAAGTGCTCTCTGGCGGGAGCATGGCAG
ACGATGTGGCAATCGGAGCATACCTTGGGATGATCGAGCACGCGAAGAGC
TTCAAGGACGTGTTGTGCAGCAAAGATATGGACGTCATCCTGTCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14076:4283..4477+

>mRNA_Ecto-sp13_S_contig14076.3184.1 ID=mRNA_Ecto-sp13_S_contig14076.3184.1|Name=mRNA_Ecto-sp13_S_contig14076.3184.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14076:4283..4477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGTCGCGCATCACCAGGCGAGCGTTCCATTCTTGGAGAGCATGAG
GGAAAGTGTCGATGAAGTGCTCTCTGGCGGGAGCATGGCAGACGATGTGG
CAATCGGAGCATACCTTGGGATGATCGAGCACGCGAAGAGCTTCAAGGAC
GTGTTGTGCAGCAAAGATATGGACGTCATCCTGTCG
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