mRNA_Ecto-sp13_S_contig14073.3182.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14073.3182.1
Unique NamemRNA_Ecto-sp13_S_contig14073.3182.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: A0A6H5K5Q3_9PHAE (AP4E_app_platf domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K5Q3_9PHAE)

HSP 1 Score: 432 bits (1111), Expect = 1.230e-139
Identity = 226/248 (91.13%), Postives = 230/248 (92.74%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTCYCAPVMKLTSFRTFCSICRGASPLSLNL 744
            SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDL+    A V  L  + +  S  RGA  +S  L
Sbjct:  266 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLLMQVMAWV--LGEYGSLASTPRGALEVSTKL 511
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BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: A0A662WVZ2_9STRA (AP4E_app_platf domain-containing protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVZ2_9STRA)

HSP 1 Score: 355 bits (910), Expect = 6.810e-112
Identity = 170/220 (77.27%), Postives = 198/220 (90.00%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTC 660
            SEGMYEVL DVMRRADTGINVGYA++YECV TVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFI+DKL  FL + +D F R +LV+RITQCAER+APSN+WY+  MT VF L GD+V+PEVAHNL++LIAEGSGEDED D+ELRR+AVD+YL+LLE P +PD++ C
Sbjct:   88 SEGMYEVLHDVMRRADTGINVGYAIIYECVHTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFISDKLTQFLREASDVFLRTELVSRITQCAERYAPSNAWYIQTMTNVFELGGDLVRPEVAHNLLRLIAEGSGEDEDQDMELRRDAVDTYLELLERPVLPDILVC 307
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: A0A5D6XL02_9STRA (AP-2 complex subunit alpha n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XL02_9STRA)

HSP 1 Score: 357 bits (915), Expect = 7.360e-112
Identity = 174/226 (76.99%), Postives = 200/226 (88.50%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTCYCAPVM 678
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFIADKL  FL   +D F R +LV RITQCAER+APSN+WY+  MT VF L GD+V+PEVAHNL++LIAEGSGEDE+ D+ELRR+AVD+YLDLLE P +PD++ C  A V+
Sbjct:  208 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFIADKLTQFLRDASDVFLRTELVARITQCAERYAPSNAWYIQTMTNVFELGGDLVRPEVAHNLLRLIAEGSGEDEEQDMELRRDAVDTYLDLLERPVLPDILVCTMAWVL 433
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: K3W798_GLOUD (AP4E_app_platf domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W798_GLOUD)

HSP 1 Score: 357 bits (917), Expect = 1.430e-111
Identity = 172/220 (78.18%), Postives = 198/220 (90.00%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTC 660
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFI+DKL  FL   +D F R +LV+RITQCAER+APSN+WY+  MT VF L GD+V+PEVAHNL++LIAEGSGEDED D+ELRR+AVD+YLDLLE P +PD++ C
Sbjct:  274 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFISDKLTQFLRDASDVFLRTELVSRITQCAERYAPSNAWYIQTMTNVFELGGDLVRPEVAHNLLRLIAEGSGEDEDQDMELRRDAVDTYLDLLERPVLPDILVC 493
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: A0A0N7L820_PLAHL (AP-2 complex subunit alpha n=3 Tax=Peronosporaceae TaxID=4777 RepID=A0A0N7L820_PLAHL)

HSP 1 Score: 355 bits (911), Expect = 5.160e-111
Identity = 170/220 (77.27%), Postives = 199/220 (90.45%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTC 660
            SEGMYEVL DVMRRADTGINVGYA++YECV+TVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFI+DKL  FL + +D F R +LV+RITQCAER+APSN+WY+  MT VF L GD+V+PEVAHNL++LIAEGSGEDED D+ELRR+AVD+YL+LLE P +PD++ C
Sbjct:  274 SEGMYEVLHDVMRRADTGINVGYAIIYECVQTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFISDKLTQFLREASDVFLRTELVSRITQCAERYAPSNAWYIQTMTNVFELGGDLVRPEVAHNLLRLIAEGSGEDEDQDMELRRDAVDTYLELLERPVLPDILVC 493
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: H3GJ53_PHYRM (AP4E_app_platf domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=H3GJ53_PHYRM)

HSP 1 Score: 356 bits (913), Expect = 6.130e-111
Identity = 172/226 (76.11%), Postives = 202/226 (89.38%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTCYCAPVM 678
            SEGMYEVL DVMRRADTGINVGYA++YECV+TVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFI+DKL  FL + +D F R +LV+RITQCAER+APSN+WY+  MT VF L GD+V+PEVAHNL++LIAEGSGEDED D+ELRR+AVD+YL+LLE P +PD++ C  A V+
Sbjct:  274 SEGMYEVLHDVMRRADTGINVGYAIIYECVQTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFISDKLTQFLREASDVFLRTELVSRITQCAERYAPSNAWYIQTMTNVFELGGDLVRPEVAHNLLRLIAEGSGEDEDQDMELRRDAVDTYLELLERPVLPDILVCTMAWVL 499
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: A0A2D4C9Y2_PYTIN (AP-2 complex subunit alpha n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C9Y2_PYTIN)

HSP 1 Score: 351 bits (900), Expect = 7.560e-111
Identity = 168/220 (76.36%), Postives = 197/220 (89.55%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTC 660
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFI++KL  FL + TD F R +LV+RITQCAER+APSN+WY+  MT VF L GD+V+PEVAHNL++LIAEGSGEDED D+ELRR+AVD+YL+L + P + D++ C
Sbjct:  212 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFISEKLTQFLREATDVFLRTELVSRITQCAERYAPSNAWYIQTMTNVFELGGDLVRPEVAHNLLRLIAEGSGEDEDQDMELRRDAVDTYLELFDRPVLSDILVC 431
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: A0A484DRC7_BRELC (AP4E_app_platf domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DRC7_BRELC)

HSP 1 Score: 355 bits (912), Expect = 1.040e-110
Identity = 172/226 (76.11%), Postives = 201/226 (88.94%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTCYCAPVM 678
            SEGMYEVL DVMRRADTGINVGYA++YECV+TVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFI DKL  FL + +D F R +LV+RITQCAER+APSN+WY+  MT VF L GD+V+PEVAHNL++LIAEGSGEDED D+ELRR+AVD+YL+LLE P +PD++ C  A V+
Sbjct:  274 SEGMYEVLHDVMRRADTGINVGYAIIYECVQTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFITDKLTQFLREASDVFLRTELVSRITQCAERYAPSNAWYIQTMTNVFELGGDLVRPEVAHNLLRLIAEGSGEDEDQDMELRRDAVDTYLELLERPVLPDILVCTMAWVL 499
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: W4FW74_9STRA (AP-2 complex subunit alpha n=6 Tax=Aphanomyces TaxID=100860 RepID=W4FW74_9STRA)

HSP 1 Score: 354 bits (909), Expect = 1.070e-110
Identity = 174/226 (76.99%), Postives = 199/226 (88.05%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTCYCAPVM 678
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFI  KL +FL + TD F R +LV+RITQCAERFAPSN+WY+  MT VF L GD+VK EVAHNLM+LIAEGSG+DED D ELRR+AVD+YL+LLE P +PD++ C  A V+
Sbjct:  275 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFIVAKLTTFLREATDVFLRTELVSRITQCAERFAPSNAWYIQTMTNVFELGGDLVKVEVAHNLMRLIAEGSGDDEDQDAELRRDAVDTYLELLEKPVLPDILVCTMAWVL 500
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Match: M4BIE3_HYAAE (AP4E_app_platf domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BIE3_HYAAE)

HSP 1 Score: 355 bits (911), Expect = 1.200e-110
Identity = 171/220 (77.73%), Postives = 198/220 (90.00%), Query Frame = 1 
Query:    1 SEGMYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRFISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTLDLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSNSWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVDSYLDLLETPAVPDLVTC 660
            SEGMYEVL DVMRRADTGINVGYA++YECVRTVT+IYPN+ LLDAAAASISRFIS++NHNLKY+GVTGLAAIV+DHP+YA  HQMAVIDCLEDPDETLKRKTLDLLY MTNPVNVEFI+DKL  FL + TD F R +LV+RITQCAER+APSN+WY+  MT VF L GD+V+ EVAHNL++LIAEGSGEDED D+ELRR+AVD+YL+LLE P +PD++ C
Sbjct:  274 SEGMYEVLHDVMRRADTGINVGYAIIYECVRTVTTIYPNSTLLDAAAASISRFISSDNHNLKYLGVTGLAAIVKDHPRYAAAHQMAVIDCLEDPDETLKRKTLDLLYRMTNPVNVEFISDKLTQFLREATDVFLRTELVSRITQCAERYAPSNAWYIQTMTNVFELGGDLVRSEVAHNLLRLIAEGSGEDEDQDMELRRDAVDTYLELLERPVLPDILVC 493
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14073.3182.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5Q3_9PHAE1.230e-13991.13AP4E_app_platf domain-containing protein n=2 Tax=E... [more]
A0A662WVZ2_9STRA6.810e-11277.27AP4E_app_platf domain-containing protein (Fragment... [more]
A0A5D6XL02_9STRA7.360e-11276.99AP-2 complex subunit alpha n=1 Tax=Pythium brassic... [more]
K3W798_GLOUD1.430e-11178.18AP4E_app_platf domain-containing protein n=1 Tax=G... [more]
A0A0N7L820_PLAHL5.160e-11177.27AP-2 complex subunit alpha n=3 Tax=Peronosporaceae... [more]
H3GJ53_PHYRM6.130e-11176.11AP4E_app_platf domain-containing protein n=11 Tax=... [more]
A0A2D4C9Y2_PYTIN7.560e-11176.36AP-2 complex subunit alpha n=1 Tax=Pythium insidio... [more]
A0A484DRC7_BRELC1.040e-11076.11AP4E_app_platf domain-containing protein n=1 Tax=B... [more]
W4FW74_9STRA1.070e-11076.99AP-2 complex subunit alpha n=6 Tax=Aphanomyces Tax... [more]
M4BIE3_HYAAE1.200e-11077.73AP4E_app_platf domain-containing protein n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14073contigEcto-sp13_S_contig14073:244..4418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score431.8
Seed ortholog evalue2.8e-118
Seed eggNOG ortholog2880.D7FX42
Preferred nameAP4E1
Model size982
KEGG koko:K12400,ko:K20164
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0006605,GO:0006810,GO:0006886,GO:0008104,GO:0008150,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030119,GO:0030124,GO:0031090,GO:0031410,GO:0031904,GO:0031974,GO:0031982,GO:0031984,GO:0032588,GO:0032991,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048475,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070013,GO:0070727,GO:0071702,GO:0071705,GO:0097708,GO:0098588,GO:0098791,GO:0098796
Exons5
EggNOG free text desc.intracellular protein transport
EggNOG OGsCOG4354@1,KOG1062@2759
Cds size972
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14073.3182.1prot_Ecto-sp13_S_contig14073.3182.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14073 253..4417 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.0707414-UTR-Ecto-sp13_S_contig14073:243..2521681462752.0707414-UTR-Ecto-sp13_S_contig14073:243..252Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14073 244..252 +
1681462752.1201863-UTR-Ecto-sp13_S_contig14073:4417..44181681462752.1201863-UTR-Ecto-sp13_S_contig14073:4417..4418Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14073 4418..4418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462752.0805464-CDS-Ecto-sp13_S_contig14073:252..4281681462752.0805464-CDS-Ecto-sp13_S_contig14073:252..428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14073 253..428 +
1681462752.0884893-CDS-Ecto-sp13_S_contig14073:610..8331681462752.0884893-CDS-Ecto-sp13_S_contig14073:610..833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14073 611..833 +
1681462752.0964103-CDS-Ecto-sp13_S_contig14073:1303..14381681462752.0964103-CDS-Ecto-sp13_S_contig14073:1303..1438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14073 1304..1438 +
1681462752.1043646-CDS-Ecto-sp13_S_contig14073:2338..24771681462752.1043646-CDS-Ecto-sp13_S_contig14073:2338..2477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14073 2339..2477 +
1681462752.1123068-CDS-Ecto-sp13_S_contig14073:4118..44171681462752.1123068-CDS-Ecto-sp13_S_contig14073:4118..4417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14073 4119..4417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14073.3182.1

>prot_Ecto-sp13_S_contig14073.3182.1 ID=prot_Ecto-sp13_S_contig14073.3182.1|Name=mRNA_Ecto-sp13_S_contig14073.3182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=324bp
MYEVLMDVMRRADTGINVGYAVVYECVRTVTSIYPNAPLLDAAAASISRF
ISAENHNLKYVGVTGLAAIVRDHPKYAQQHQMAVIDCLEDPDETLKRKTL
DLLYTMTNPVNVEFIADKLLSFLEQGTDSFWRQDLVNRITQCAERFAPSN
SWYVGVMTKVFRLAGDMVKPEVAHNLMQLIAEGSGEDEDADVELRRNAVD
SYLDLLETPAVPDLVTCYCAPVMKLTSFRTFCSICRGASPLSLNLSLLSL
SLSLYLSLLRSSLFRRLCLCQRGVPARGAPADSLLAVQAVGSSAAMPGVP
AAGEGGAGGHGGRASRRRELRGR*
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mRNA from alignment at Ecto-sp13_S_contig14073:244..4418+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14073.3182.1 ID=mRNA_Ecto-sp13_S_contig14073.3182.1|Name=mRNA_Ecto-sp13_S_contig14073.3182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4175bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14073:244..4418+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGAGGGCATGTACGAGGTCCTGATGGACGTCATGCGGCGCGCGGACAC
GGGCATCAACGTGGGGTACGCCGTCGTGTACGAGTGCGTGAGGACGGTGA
CGAGCATCTACCCCAACGCGCCCCTCCTGGACGCCGCGGCGGCGAGCATC
TCGCGGTTCATCTCGGCGGAGAACCACAACCTCAAGTGAGTTGTGTGTTG
GCTGGGGAGACAGACGATTAGTAACGGCCTGATTGGTCGTGGGTGTGTGC
GCTGTAGCTTGCGACTCCCGTACCCCCCACCCGGCCTTTTTTCCCCTGTT
CTCCTTTTTGAAGTTTCCACCTCTGTTTGTTGCGTGTGTCTCGTTGTGTC
TACGAAACAATCGGAAGGTACGTGGGCGTGACGGGTCTCGCGGCGATCGT
GCGGGACCACCCCAAGTACGCCCAGCAGCACCAGATGGCGGTGATCGACT
GCCTCGAGGACCCCGACGAGACGCTCAAGCGCAAGACGCTGGACCTGCTC
TACACCATGACCAACCCGGTCAACGTGGAGTTCATCGCGGACAAGCTCTT
GTCGTTTCTGGAGCAGGGGACGGACTCCTTCTGGCGGCAGGTGATAAGTG
TGGGGATGTCTGGATTTTTTTTTGCTTGGGGTGAATGGTAGAGTTGGTAT
TGATCATTGCCTTGTGCGTGCACCTTATGTGGCCTATCCAATGTTTTTTT
TTTTAAACGATGATAGTTGCAGTTTTTTGTGTTTTTTGTAGCTTTTATTC
AATTGGTCGGATACAGGGCGTCTCGCCAGCATCTTCGAGTCTAATTAATT
TTTTGTGATCTCAATACAAGAGTGTGGCGTCTTGTTAACAACATGTACCA
AGCACGACGCACTTGCACAACGTCCCCATCCATGCATGTCTCAAATCTTC
ATGGCGAAAGTTCCGTGGTCACGGTCTACCACACCCCAACATGTTATGTA
TGTGTCCTCTCGGCGCATCCCTTCCCCCTCGGCGTGTTCGTCCACTCGCT
GGCAAAACGTGACATAATATGCCCTTACTCGCACCCTCGTTGCAACTGCT
GCTGCTGCAGGACCTGGTGAATAGGATAACACAGTGTGCCGAGCGGTTTG
CGCCGAGCAACTCGTGGTACGTCGGCGTGATGACGAAGGTCTTCCGGCTG
GCGGGAGACATGGTCAAGCCAGAGGTCGCGCACAACCTCATGCAGGTAAT
TGTGCGGATGTCGCGGTCGCTTCGGTCGTGTGTCGGGAAGGGACAAGGGA
CACGACAACACTGAGTGAGAAGGCTGGTAAACACGGGCATGGTAGCACAA
CACTCCTGTAACCGGTGAATCTTGCGAACCTACCGACGCACGGGGATGAA
TGCCGCGCGTTGTTTTCGGAGCTACCTTGCGGGACGGGGAACGCCAAAAT
ATGTAACGTGTGTATCATGTGGCAAGGAGGGAAGGTCTCTGTTTTTGGAG
TCCACACGGAAATAAACATGCCGGCGACATCGTATCGTTTTATGGAGTAC
AAGGAGACGTACACCCCATGCTGCGTACGTCGGTATGTGTACGTCGGTAT
TTGTACCCCCGCACTTCTCGTCCTGCATACTGCCATCCTTGCGGCTGTTG
TGTTGTTGTTTGTCGGAGTCAGCCGGCTAGGGTGTACTGGCGTGCGTCAC
GTCCTCCTGTCGAGAGTTACAGCAGGGCCGGAAAAGTGAATACAAGGAGT
GCATGCACAGCGCGCTGCGAGAGCTCAGACACACGTGGCCTTCGTTGTAC
CGACCGCTGTTCTTTGTCGCATGTCTCGACATTTTTCGGCCGTGAAATCT
TCTTTGGAGCGGGCTGTTACAATATAAGCCAGACGTGAACGTAAGCCCAA
CGCTGACAGACGGGCTGGTGTTCAAGTTCGTGTTTCCCTCCTCCCCGTAT
GGTTTGGTTTGTTTGTTTTGTTCGGGCTGCTGCTCACGTCGTTCCGACCA
GTCGGAGGTTAGCGGCCACAGACGAAAGGCGCTCTTTGATGACGATGTTG
GTGTTTCCTGCTCCCAATAGGTGTACTTTTGGTTTTTCGTTGTAAAGGTT
TGTTTGTCCGGGCTGCTGTGCGCGTCGTTTCTACCCTCATCGTAGCTTAT
CGCGGAGGGCAGCGGGGAGGACGAGGATGCCGACGTGGAGCTTAGAAGGA
ACGCGGTGGACAGCTACCTGGATCTTCTGGAAACCCCGGCTGTGCCTGAC
CTGGTAACGTGCTACTGTGCTCCTGTGATGAAATGTTTGTGATACATGCG
TTGTTGGCACAAGCGCTCTGCCGAATATTTTTCGGTGTTTGCCTCTCTTT
TGCCTCGACAGTTTTCTCCTTTTCCCCACGCACTTCCTGCCACTGCATCA
GCAACATTAAAAGTGACTGATGGATAGGACCTGGCCATGTTACGTGACAC
CCCACACCTTTCTCCAGCTGCTGTCGTTGAAAGCGACCTATCCATTGGAC
TTTCTATTTGCTGATACCTACATGCTTCTCCGACCGCTGTTGCTTTCATT
GAGAGTGACGCACAGTTTCCATATGTNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGAAC
GAATTGCATGGCGGAATGGGTTCGGGAGTGGACTTGAAACGTAGTACTTC
GAACGAAGTGCATGGCGGAATGGGTTCGGGAGTGAATATGGACTTGGCAC
GTGCTATATCTACAGCGAGGCTGGGGGAGTGAATGTTTTTCGGATTCTGC
ACATGCCATTGCATCTATATCATATATTGGGGAGTGAATACATCCCGGGG
TACAGACCATCTATGTGAATCTCGTATTAGGAAGTGACGAGTGGATTTCT
TTTGAACGTGACGCGGCGTGTTACATCTGGTTAAGGAGTGAATTTTTTTG
GGACATGGCATGTGACGCGCTGCGTCTAGCATGGCTCGGGGAAGTTTATC
CGGACTTGGGACCTGCGACATACCGCGTCCGACATACCGCGTCTCGTAGG
GGATGGGGAGTGAACGCCTTCAACGTGGTACGTATGGTGTGTCGCAGCAT
CGATCTTGGCACGGGTTGGTGTGGGAATTTGTGACTTCGGCACATGCTGC
ATGGCATCGATCTGTGGCTGGGGAGTGAATTGAGTTTCGGCTTTCGCAAT
GAATAGTTCTCACAACAAAAATATTTGTTTCTTTGGGACCTGGCACGTTG
CTACCAGCATCTGTCGCGGGTTCAACGGATGGCCTTCTGTCGGGCTGTGC
TCGTGTAGCTACATACGGTATCTAGCGCGCATTGATTGGGAGGGAATTGA
TTTCTTTCGGACGTGGCGCGGATGATTCGGGTTGCGGAGCGAGTTATTTT
TGCCTTTTTGGCAGGTGCTGCATACCATCTAGCACGGGTAGTGGGCAGGT
GAATAATGTTCGGACGCGGAACTTCCTACATGTTGAGCATCTAGTTGTGT
TGCGTAGTGAATTTTTTTGGACCCGGAACTCTATTCATAATCAGGGAATA
TACCTTTGCACGAGTTGGGTACTGAATTTGTGTTATGCACGCTACATACC
ACGTAGCACTAGCTGGATTAGGTCCTTAAGAACTTGGTAAATGTTGCAAA
GCATCACTCAGCGCGGGTTGGGGAGTGACTTCGTTTCGGACGTTCTGCAG
CATCTGTAGGGGCGCCTCCCCTCTGTCACTAAACCTCTCTCTTCTCTCTC
TCTCTCTCTCTCTCTACCTCTCGCTCCTTCGCTCTTCTCTCTTCCGGCGT
TTGTGCCTCTGTCAGCGAGGTGTCCCCGCCCGTGGCGCACCTGCTGACTC
TCTACTCGCAGTCCAAGCAGTCGGATCTTCAGCAGCGATGCCTGGAGTTC
CTGCAGCTGGCGAGGGAGGGGCCGGCGGCCATGGCGGCCGTGCTTCCCGT
CGACGCGAGCTGCGAGGACGTTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14073:244..4418+

>mRNA_Ecto-sp13_S_contig14073.3182.1 ID=mRNA_Ecto-sp13_S_contig14073.3182.1|Name=mRNA_Ecto-sp13_S_contig14073.3182.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=972bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14073:244..4418+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACGAGGTCCTGATGGACGTCATGCGGCGCGCGGACACGGGCATCAA
CGTGGGGTACGCCGTCGTGTACGAGTGCGTGAGGACGGTGACGAGCATCT
ACCCCAACGCGCCCCTCCTGGACGCCGCGGCGGCGAGCATCTCGCGGTTC
ATCTCGGCGGAGAACCACAACCTCAAGTACGTGGGCGTGACGGGTCTCGC
GGCGATCGTGCGGGACCACCCCAAGTACGCCCAGCAGCACCAGATGGCGG
TGATCGACTGCCTCGAGGACCCCGACGAGACGCTCAAGCGCAAGACGCTG
GACCTGCTCTACACCATGACCAACCCGGTCAACGTGGAGTTCATCGCGGA
CAAGCTCTTGTCGTTTCTGGAGCAGGGGACGGACTCCTTCTGGCGGCAGG
ACCTGGTGAATAGGATAACACAGTGTGCCGAGCGGTTTGCGCCGAGCAAC
TCGTGGTACGTCGGCGTGATGACGAAGGTCTTCCGGCTGGCGGGAGACAT
GGTCAAGCCAGAGGTCGCGCACAACCTCATGCAGCTTATCGCGGAGGGCA
GCGGGGAGGACGAGGATGCCGACGTGGAGCTTAGAAGGAACGCGGTGGAC
AGCTACCTGGATCTTCTGGAAACCCCGGCTGTGCCTGACCTGGTAACGTG
CTACTGTGCTCCTGTGATGAAATTGACTTCGTTTCGGACGTTCTGCAGCA
TCTGTAGGGGCGCCTCCCCTCTGTCACTAAACCTCTCTCTTCTCTCTCTC
TCTCTCTCTCTCTACCTCTCGCTCCTTCGCTCTTCTCTCTTCCGGCGTTT
GTGCCTCTGTCAGCGAGGTGTCCCCGCCCGTGGCGCACCTGCTGACTCTC
TACTCGCAGTCCAAGCAGTCGGATCTTCAGCAGCGATGCCTGGAGTTCCT
GCAGCTGGCGAGGGAGGGGCCGGCGGCCATGGCGGCCGTGCTTCCCGTCG
ACGCGAGCTGCGAGGACGTTGA
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