mRNA_Ecto-sp13_S_contig1407.3179.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1407.3179.1
Unique NamemRNA_Ecto-sp13_S_contig1407.3179.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: A0A6H5JSL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSL4_9PHAE)

HSP 1 Score: 1078 bits (2788), Expect = 0.000e+0
Identity = 728/979 (74.36%), Postives = 754/979 (77.02%), Query Frame = 1 
Query:    1 ALSSYMVDQVVGWRDRCEGAVKEFQAYIQGGDTAEATAMMGXXXXXXXXSAGLVLSSVGRRLGFEASLVERLGRLICEGALIEVVDVHKEDTMLRRALWTLTASLCFPQAAACLRLGQEPGLEETLSPEDQEALRSSGLSHDSTTRLRPTFETLEACLTEGRTLGLSRTKSKGRRSSAXXXXXXXXXXXVPNKEPSSTSNGVVSPXXXXXXXXXXXXXXXXXXXXXXXTTSCSPLAGERPSSEPLATGVRLYTCLFNAVGNILQAVVRSEAKPFREARNNLPALREATRWAAIEPSWGYARALASELSWRRENAAPAAVCGGVHVAAAAA-QMVAEVDSGSPAPGEPAVGAQSATVVQEEQGGDVDVYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQYRCLVCCEAQPEKHGPYKHRWSTNVAIEAAVRRATPRRTANSSXXXXXXXXXXXXXXXLPKEISSSTGEEEGADGRRFDSPRRLPRLTGNAATSPAGGERSVGPSAPNFSDASGSAGXXXXXXXXXXXXXXXXXYHPVADGSPP-VVVGIQAAAESAGLASKRLRDNGSSRHGGXGDDRPGAKRARAAGSVARCVESVAREFTGLGIPFPPPAAAHSPLKEAPAVAASASAAAPAAERCCRRTGVVARVMGSXXXXXXXXXAALVVDDAQEVAALDAKPAAAXXXXXXXXXXXXXXXXXXXXXXXXVGCAAPAFEERTFDDTCRPGVGKGREGGGGEQ-EGKEAGALSQPVVLRPPPMAEILAGAGLVGSSAGSSSSGGAEQGFGVVTRHRPQLGSGSRHVYLHEQQHHRQHQQHQTLKQGKGYGCDMVWAPPPXXXXPSVPGITPAPHTQHSSSTEPPSPTSGVLPFGVVPAAKPSAVGSHARRLQAARPSFHGDGGSHNGGRREDRAGMLLEKRSAGGTRGRVVGAKTSTAVVTAALAWTSHEQRPTATTTTVVGRNQAEARSTGAGSSK 2928
            A  +YMV QVVGWRDRCE AVK+FQAYIQGGDTAEATAM G        SAGLVL+S GRRLGFEASLVERLGRL+CEGALIEVVDVHKEDTMLRRALWTLTASLCFP+A +CLRLGQEPGLEETLS EDQEALRSS LS DSTTRLRPTFETLEACLTEGR LGLSRTKSKGRRSSA XXXXXXXXXX                XXXXXXXXXXXXXXXXXXXXXXX TSC PLAGERPSSEPL TGVRLYTCLF+AVG+ILQAVV++EAKPFREARNNLPALREATRWAAIEPSWGYARALASEL WRRENAAPAA   GVHVAAAAA QMVAEVDS SPAPGEP VGAQSA VVQEEQGGDVDVYCICR GDDGGVMVECDLCGEWYH+S                                  WSTNVAIEAAVRR          XXXXXXXXXXXXXXX PKE+SS+TGEEEGADGRRFDSP R PR TGNAATSPAGGERSVGPS PNFSDAS SA XXXXXXXXXXXXXXXXX           VVVG +AAAE AGLASKRLRD GSS HG  GD+RPGAKR RAAGSVAR VESVAREF GLGIPFPP      P                  ERCCRRTGVVARVMGS         AALVVDD QEVAALD +PAAA       XXXXXXXXXXXXX    VGCAAPAFEERTFDD CRPGVG+GREGGGG+Q EGK A ALSQPVVLRP PMAEILAGAGLVGSS         EQGF VVTRHRPQ GSGSRHVYLH+          QTLKQGK            XXX PS PGITP PHTQHSSS EP S TSGVLPFGVVPAA+PSAVG HAR LQA RP  HGDGGSH+ GR+ED AG LLEKRSAGGTRG+V+G K STAVVT ALAWTSHEQRPTATT  VVGR+QAEA   GAGS+K
Sbjct:  989 AYLNYMVVQVVGWRDRCEDAVKDFQAYIQGGDTAEATAMKGGTPTPPTPSAGLVLASAGRRLGFEASLVERLGRLVCEGALIEVVDVHKEDTMLRRALWTLTASLCFPKATSCLRLGQEPGLEETLSSEDQEALRSSDLSQDSTTRLRPTFETLEACLTEGRALGLSRTKSKGRRSSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSCLPLAGERPSSEPLGTGVRLYTCLFDAVGDILQAVVKAEAKPFREARNNLPALREATRWAAIEPSWGYARALASELFWRRENAAPAAAARGVHVAAAAAAQMVAEVDSSSPAPGEPTVGAQSARVVQEEQGGDVDVYCICREGDDGGVMVECDLCGEWYHASW---------------------------------WSTNVAIEAAVRRXXX--XXXXXXXXXXXXXXXXXXXXXPKEVSSNTGEEEGADGRRFDSPGRWPRATGNAATSPAGGERSVGPSTPNFSDASASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVGTKAAAEPAGLASKRLRDKGSSCHGRGGDNRPGAKRTRAAGSVARYVESVAREFAGLGIPFPP----LPPXXXXXXXXXXXXXXXXXXERCCRRTGVVARVMGSEASSAGRCCAALVVDDVQEVAALDVEPAAAAVGGSGAXXXXXXXXXXXXXGCG-VGCAAPAFEERTFDDMCRPGVGEGREGGGGQQGEGKGAEALSQPVVLRPNPMAEILAGAGLVGSSGXXXXXXXXEQGFVVVTRHRPQQGSGSRHVYLHQXXXXXXXXXXQTLKQGKXXXXXXXXXX--XXXLPSFPGITPKPHTQHSSSIEPQSSTSGVLPFGVVPAAEPSAVGPHARCLQAVRPRSHGDGGSHDSGRKEDHAGTLLEKRSAGGTRGQVIGVKASTAVVTEALAWTSHEQRPTATTCAVVGRDQAEAGGMGAGSTK 1925
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BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: D8LN51_ECTSI (Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN51_ECTSI)

HSP 1 Score: 625 bits (1612), Expect = 9.150e-200
Identity = 371/427 (86.89%), Postives = 380/427 (88.99%), Query Frame = 1 
Query:    1 ALSSYMVDQVVGWRDRCEGAVKEFQAYIQGGDTAEATAMM-GXXXXXXXXSAGLVLSSVGRRLGFEASLVERLGRLICEGALIEVVDVHKEDTMLRRALWTLTASLCFPQAAACLRLGQEPGLEETLSPEDQEALRSSGLSHDSTTRLRPTFETLEACLTEGRTLGLSRTKSKGRRSSAXXXXXXXXXXXVPNKEPSSTSNGVVSPXXXXXXXXXXXXXXXXXXXXXXXTTSCSPLAGERPSSEPLATGVRLYTCLFNAVGNILQAVVRSEAKPFREARNNLPALREATRWAAIEPSWGYARALASELSWRRENAAPAAVCGGVHVAAAAAQMVAEVDSGSPAPGEPAVGAQSATVVQEEQGGDVDVYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQYRCLVCCEAQPEKHGPYKHR 1278
            A  +YMVDQVVGWRDRCE AVKEFQAYIQGGDTAEATAM  G  XXXXXXSAGLVL+S GRRLGFEASLVERLGRL+CEG LIEVVDVHKEDTMLRRALWTLTASLC P+AAACLRLGQEPGLEETLSPEDQEALRS+GLS DSTTRLRPTFETLEACLTEGRTLGLSRTKSKGRR+SA   XXXXXXXX                 XXXXXXXXXXXXXXXXXXXXXX TS  PLAGERPSSEPL TGVRLY CLF+AVG+ILQAVVRSEAKPFREARNNLPALREATRWAAIEPSWGYARALASELSWRREN APA V  GVHVAAAA  M A VDS SPAPGEPAVGAQSATVVQEEQGGDVDVYCICRGGDDGGVMVECDLCGEWYH+SCVGL AQTAGELQQYRCLVCCEA PEKHGPYKHR
Sbjct: 1126 AYLNYMVDQVVGWRDRCEDAVKEFQAYIQGGDTAEATAMREGTPXXXXXXSAGLVLASAGRRLGFEASLVERLGRLVCEGVLIEVVDVHKEDTMLRRALWTLTASLCLPRAAACLRLGQEPGLEETLSPEDQEALRSNGLSQDSTTRLRPTFETLEACLTEGRTLGLSRTKSKGRRNSAGATXXXXXXXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXTSSLPLAGERPSSEPLGTGVRLYNCLFDAVGDILQAVVRSEAKPFREARNNLPALREATRWAAIEPSWGYARALASELSWRRENDAPADVAAGVHVAAAA-PMAAAVDSWSPAPGEPAVGAQSATVVQEEQGGDVDVYCICRGGDDGGVMVECDLCGEWYHASCVGLTAQTAGELQQYRCLVCCEAHPEKHGPYKHR 1549
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: D8LN50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN50_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 9.350e-22
Identity = 55/64 (85.94%), Postives = 58/64 (90.62%), Query Frame = 1 
Query: 2743 MLLEKRSAGGTRGRVVGAKTSTAVVTAALAWTSHEQRPTATTTTVVGRNQAEARSTGAGSSKGT 2934
            MLLEKRSAGGTRG+V+ AK STAVVTAALAWTSHEQRPTATTT VVGRNQAEA   GAGS+KGT
Sbjct:    1 MLLEKRSAGGTRGQVIAAKASTAVVTAALAWTSHEQRPTATTTAVVGRNQAEAGGMGAGSTKGT 64
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BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: A0A8B6CNB1_MYTGA (PHD-type domain-containing protein (Fragment) n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6CNB1_MYTGA)

HSP 1 Score: 62.8 bits (151), Expect = 2.500e-8
Identity = 22/47 (46.81%), Postives = 30/47 (63.83%), Query Frame = 1 
Query: 1096 VYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQYRCLVC 1236
            +YC CRG DDGG+M+ CD C EW+H  CV +  + A  +  Y+C  C
Sbjct:   49 IYCSCRGPDDGGLMIRCDECREWFHGRCVAITPEEADRMDAYQCPGC 95
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BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: A0A8B6GBQ9_MYTGA (COMPASS component SPP1 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6GBQ9_MYTGA)

HSP 1 Score: 64.7 bits (156), Expect = 2.690e-7
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query: 1093 DVYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQYRCLVC 1236
            D+YCICR GD G  M++CDLC +WYH +CV +  + A     Y C  C
Sbjct:  272 DIYCICRKGDQGAFMIQCDLCDDWYHGTCVNVTPEVAETFATYHCPKC 319
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BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: UPI001EE534B5 (PHD finger protein ALFIN-LIKE 7-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE534B5)

HSP 1 Score: 61.2 bits (147), Expect = 4.910e-7
Identity = 23/47 (48.94%), Postives = 29/47 (61.70%), Query Frame = 1 
Query: 1096 VYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQYRCLVC 1236
            VYC CR  DDGG M+ CD C EW+H +CVG+    A  + +Y C  C
Sbjct:  113 VYCPCRQPDDGGFMIACDGCDEWFHGACVGVTETMAEAMDEYHCPTC 159
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BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: A0A0S7FSH1_9TELE (PHF8 n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7FSH1_9TELE)

HSP 1 Score: 58.9 bits (141), Expect = 6.260e-7
Identity = 27/60 (45.00%), Postives = 35/60 (58.33%), Query Frame = 1 
Query: 1090 VDVYCICR-GGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQYRCLVCCEAQPEKHGP 1266
            V VYC+CR   D    M+ECD+C +W+H SCVG+  + A E+ QY C  C       HGP
Sbjct:    4 VPVYCLCRLPYDVTRFMIECDICQDWFHGSCVGVEEEKAAEIDQYHCPNC----QVTHGP 59
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: A0A8B6EJ09_MYTGA (Uncharacterized protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EJ09_MYTGA)

HSP 1 Score: 64.7 bits (156), Expect = 6.850e-7
Identity = 23/48 (47.92%), Postives = 30/48 (62.50%), Query Frame = 1 
Query: 1093 DVYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQYRCLVC 1236
            D+YCICR GD G  M++CDLC +WYH +CV +  + A     Y C  C
Sbjct:  546 DIYCICRKGDQGAFMIQCDLCDDWYHGTCVNVTPEVAETFATYHCPKC 593
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: UPI00106DBBA2 (CXXC-type zinc finger protein 1-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106DBBA2)

HSP 1 Score: 58.5 bits (140), Expect = 1.250e-6
Identity = 24/60 (40.00%), Postives = 33/60 (55.00%), Query Frame = 1 
Query: 1069 QEEQGGDVDVYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQ----YRCLVC 1236
            + E   D ++YC+CRG DDG  M+ CD C EWYH  CVG+      +  +    Y C +C
Sbjct:   57 ESETSDDENIYCVCRGPDDGRFMICCDACDEWYHGECVGMDESECKDHAESDVPYICTLC 116
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Match: A0A146H4R0_MYCCL (Transcription factor BYE1 n=2 Tax=Mycena chlorophos TaxID=658473 RepID=A0A146H4R0_MYCCL)

HSP 1 Score: 63.2 bits (152), Expect = 2.610e-6
Identity = 26/48 (54.17%), Postives = 30/48 (62.50%), Query Frame = 1 
Query: 1093 DVYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQQYRCLVC 1236
            DVYC+CRG DDG  MV C  C EWYH +CV L   TA ++  Y C  C
Sbjct:   23 DVYCLCRGVDDGSPMVNCGHCNEWYHFACVDLSEGTADDINVYICPPC 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1407.3179.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSL4_9PHAE0.000e+074.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN51_ECTSI9.150e-20086.89Whsc1 protein n=1 Tax=Ectocarpus siliculosus TaxID... [more]
D8LN50_ECTSI9.350e-2285.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8B6CNB1_MYTGA2.500e-846.81PHD-type domain-containing protein (Fragment) n=1 ... [more]
A0A8B6GBQ9_MYTGA2.690e-747.92COMPASS component SPP1 n=1 Tax=Mytilus galloprovin... [more]
UPI001EE534B54.910e-748.94PHD finger protein ALFIN-LIKE 7-like n=1 Tax=Halio... [more]
A0A0S7FSH1_9TELE6.260e-745.00PHF8 n=1 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
A0A8B6EJ09_MYTGA6.850e-747.92Uncharacterized protein n=2 Tax=Mytilus galloprovi... [more]
UPI00106DBBA21.250e-640.00CXXC-type zinc finger protein 1-like n=1 Tax=Dendr... [more]
A0A146H4R0_MYCCL2.610e-654.17Transcription factor BYE1 n=2 Tax=Mycena chloropho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1407contigEcto-sp13_S_contig1407:11164..16950 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score626.3
Seed ortholog evalue2.4e-176
Seed eggNOG ortholog2880.D8LN51
Model size2937
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K06101,ko:K07117,ko:K11423,ko:K11424,ko:K11728
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko05202,map00310,map05202
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000803,GO:0000805,GO:0003006,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006325,GO:0006464,GO:0006479,GO:0006807,GO:0006996,GO:0007275,GO:0007530,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009892,GO:0009987,GO:0010452,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016278,GO:0016279,GO:0016458,GO:0016569,GO:0016570,GO:0016571,GO:0016740,GO:0016741,GO:0018022,GO:0018024,GO:0018193,GO:0018205,GO:0018992,GO:0019222,GO:0019538,GO:0022414,GO:0030849,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0034968,GO:0036211,GO:0040029,GO:0042054,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046975,GO:0048519,GO:0048856,GO:0050789,GO:0051276,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0140096,GO:1901564
Exons7
EggNOG free text desc.SET domain
EggNOG OGsCOG2940@1,KOG1081@2759,KOG1632@1,KOG1632@2759
EC2.1.1.43
Cds size2922
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1407.3179.1prot_Ecto-sp13_S_contig1407.3179.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1407 11164..16935 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.8878043-CDS-Ecto-sp13_S_contig1407:11163..128231681462751.8878043-CDS-Ecto-sp13_S_contig1407:11163..12823Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 11164..12823 -
1681462751.900656-CDS-Ecto-sp13_S_contig1407:13398..134971681462751.900656-CDS-Ecto-sp13_S_contig1407:13398..13497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 13399..13497 -
1681462751.917117-CDS-Ecto-sp13_S_contig1407:13863..142491681462751.917117-CDS-Ecto-sp13_S_contig1407:13863..14249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 13864..14249 -
1681462751.936838-CDS-Ecto-sp13_S_contig1407:14623..149301681462751.936838-CDS-Ecto-sp13_S_contig1407:14623..14930Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 14624..14930 -
1681462751.947694-CDS-Ecto-sp13_S_contig1407:15306..154301681462751.947694-CDS-Ecto-sp13_S_contig1407:15306..15430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 15307..15430 -
1681462751.958276-CDS-Ecto-sp13_S_contig1407:15883..159741681462751.958276-CDS-Ecto-sp13_S_contig1407:15883..15974Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 15884..15974 -
1681462751.9681997-CDS-Ecto-sp13_S_contig1407:16680..169351681462751.9681997-CDS-Ecto-sp13_S_contig1407:16680..16935Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 16681..16935 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.9780471-UTR-Ecto-sp13_S_contig1407:16935..169501681462751.9780471-UTR-Ecto-sp13_S_contig1407:16935..16950Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1407 16936..16950 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1407.3179.1

>prot_Ecto-sp13_S_contig1407.3179.1 ID=prot_Ecto-sp13_S_contig1407.3179.1|Name=mRNA_Ecto-sp13_S_contig1407.3179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=974bp
MVDQVVGWRDRCEGAVKEFQAYIQGGDTAEATAMMGGTPPPPPPSAGLVL
SSVGRRLGFEASLVERLGRLICEGALIEVVDVHKEDTMLRRALWTLTASL
CFPQAAACLRLGQEPGLEETLSPEDQEALRSSGLSHDSTTRLRPTFETLE
ACLTEGRTLGLSRTKSKGRRSSAGATGGGGGKGEVPNKEPSSTSNGVVSP
SASSLSGSASSVSVAAAAAAAAATTSCSPLAGERPSSEPLATGVRLYTCL
FNAVGNILQAVVRSEAKPFREARNNLPALREATRWAAIEPSWGYARALAS
ELSWRRENAAPAAVCGGVHVAAAAAQMVAEVDSGSPAPGEPAVGAQSATV
VQEEQGGDVDVYCICRGGDDGGVMVECDLCGEWYHSSCVGLRAQTAGELQ
QYRCLVCCEAQPEKHGPYKHRWSTNVAIEAAVRRATPRRTANSSNNQNPK
PTQQQQQQQLPKEISSSTGEEEGADGRRFDSPRRLPRLTGNAATSPAGGE
RSVGPSAPNFSDASGSAGGGSGEGAASDGGNGGDDYHPVADGSPPVVVGI
QAAAESAGLASKRLRDNGSSRHGGGGDDRPGAKRARAAGSVARCVESVAR
EFTGLGIPFPPPAAAHSPLKEAPAVAASASAAAPAAERCCRRTGVVARVM
GSEAPPAERCCAALVVDDAQEVAALDAKPAAAAAAGGSGAGVVARARGSE
SSSGYGVGCAAPAFEERTFDDTCRPGVGKGREGGGGEQEGKEAGALSQPV
VLRPPPMAEILAGAGLVGSSAGSSSSGGAEQGFGVVTRHRPQLGSGSRHV
YLHEQQHHRQHQQHQTLKQGKGYGCDMVWAPPPPPPLPSVPGITPAPHTQ
HSSSTEPPSPTSGVLPFGVVPAAKPSAVGSHARRLQAARPSFHGDGGSHN
GGRREDRAGMLLEKRSAGGTRGRVVGAKTSTAVVTAALAWTSHEQRPTAT
TTTVVGRNQAEARSTGAGSSKGT*
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mRNA from alignment at Ecto-sp13_S_contig1407:11164..16950-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1407.3179.1 ID=mRNA_Ecto-sp13_S_contig1407.3179.1|Name=mRNA_Ecto-sp13_S_contig1407.3179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5787bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:11164..16950- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCTCTCTAGCTACATGGTGGACCAGGTGGTGGGTTGGAGGGACCGGTG
TGAAGGCGCCGTGAAGGAGTTCCAGGCGTACATCCAGGGCGGGGACACGG
CAGAAGCAACGGCGATGATGGGAGGGACACCGCCGCCGCCGCCGCCTTCG
GCAGGGCTCGTGCTTTCCTCCGTAGGGCGAAGGCTTGGGTTTGAGGCCTC
GCTCGTGGAGAGGCTGGGCAGGCTGATATGCGAGGGGGCGCTGATCGAGG
TGGTAGACGTGCACAAAGAGGTACGTGTGTTCGTGTTCTTTGTTGTGTGC
TTCGACAGCGCTATGACCGGCTGGCCCATGACAACGCCGCAGCCTTGCGA
TGTTTGTGTTTATTTTTTTTTCTTCAACTTTCGTCGACGGCGCTAACTGG
CTGGACCAATGGCGACACGTCAGTCTCATGGCAGTATAGGAAACGCCAAT
ACGCTTTCTAATCAAAGAGTTTTACCGGCTAGCGGGGGGTGCAGGGTGAC
CGTGTATGTGTGTGTGTTTCTTGTTTTGCATCGACGGCGTTCTCTGATTG
ACCGATGAAATGACGGCACTCTAATAGCTGGGAAATAGGAACCGAGAAGT
TGCGTTCGGGGACCGTTGCCAGGCCTGGTGATTTTTTCGTTTTTTGATAC
GAACGTGCTGTCAACAAAAAAATGTGTTCGTCCTCACCATGCTCCACGTC
ATTGTTTTTTGTCGTCGAGTGTCCAGTGCGTGCCTTACACGTTGATGGTG
GTCGACGTACAGCAGCACCGGTTCAACATCGTGCCTTAGCAATAGAGATT
GAGGCATGCGCAAAAACGTTTTTTTCACTTGAATGCCTTTTCGACCTCAT
CCCCTGTACGCAGGACATTTGGGTACTTTTTACCTCACCGTGTGCAATTG
CGATTTCGTCAGGTTTGAAAGTTGCCGCACCAATGGATCGCGCTTGTTGT
TCTGTGCGCCCCTCCTTGCCGCGCAGGACACCATGCTGCGAAGAGCCCTT
TGGACCCTGACGGCCTCGCTGTGCTTTCCTCAGGCGGCGGCTTGCCTAAG
GCTGGGTCAAGAACCAGGTGCGTTCTCATGTATGTATTCAACGCAGCGAC
TTTCCGCGCCCAGCTTACGAGATTACGTACTCGTCTGTTGTACGTGAAGC
CGGGTGGATCGATTCTAAAGTAGATGGGGGTGCCAGCGTCGTCGCGAAAG
GAGTTCGACACCGCCGGTGACGGTAAGGCTCTGGATGGAGTGCGGCGGTG
GTATGTCTCCCGCCGTACCGTGGTGTCCGGGGCTTGTGATCCGAACGGTT
CATTTTAAGCCCTTGACGACGAAATCCACGTCGGCTTGACCTCACGAAGA
GTGAAGAAAATGGAAAAATGGTCGTGCCTCCACACTACATACGATATCGA
CTAGCACGTACCTAAGATTCTTCCCCGCTCTCGCTCTTCTGCCCCCGCCC
CCGCTCCCCTCGCTTTTCGGTGCCTCTCTCTGTCCCCCTGCCTCTGTCCC
TCTCCCTCCCGCCCTGCCAGGGCTGGAGGAAACCCTGTCCCCGGAAGACC
AAGAGGCCTTGCGATCGAGTGGCCTGTCTCACGACAGCACCACGAGGCTA
CGGCCCACCTTCGAAACCCTCGAGGCTTGCCTCACGGAAGGCCGGTAGGA
ACAATCAACTCTTCCGCTACGGTATCGTTTCCTCCCAGACTGCAAAATCG
TGCACTCCACGGGGCATTTTTTTTTCTGTCTCCTGGGCTCTTCCGTCCCC
TTTTTTTTACCAATATTTCGGTTCGCCACTTTGCCCGTTTAGGGTTATTT
TTTTAGGGCCGTGTGACGTCGCCAAGCCCGTGTTGATCAAGCGTCGTGAC
GTCACGGGGACAGCCCTTCAGCTGCTGCAGCTGCGGCAGCTGGCCAACTC
GACCTACCCCAACCGCACGTCACTACACTAGGCTCGACGCAATCCTTAAC
CGATCCAATTGTCCCTTTTTCCCACGCCCCCCCCATGCCACACGCGCCCA
CTGTTCGCTGCTGCTCCCAGTACGCTCGGGCTGTCGCGAACCAAGTCCAA
AGGCCGGAGAAGTTCCGCCGGTGCCACTGGCGGTGGCGGTGGTAAGGGGG
AGGTGCCGAACAAAGAACCATCGTCTACTAGCAATGGTGTGGTGTCCCCG
TCGGCGTCTTCGTTGTCTGGTTCGGCCTCCTCCGTGTCGGTGGCGGCGGC
GGCGGCGGCGGCGGCGGCGACTACGTCTTGCTCCCCTCTGGCGGGCGAGA
GGCCTAGCTCGGAGCCTCTGGCCACGGGGGTGCGATTGTACACATGCTTG
TTCAATGCCGTGGGTAATATCCTTCAGGTGAGCGAGGGTGGAGGGAAAAC
GGTGTTGAGGTTGCATCTGAGCGACATGTTCTTATCTAATTCTTGGAGAG
TACGCCGAATTGTTTCGTGCACTTGTATTTTGGTTTGAGGCGCGTCGAAT
TGTTTTCTTCTTTTTTTTATTGTTTTATCTTCCACATTTCTGGACCAAGC
AAAATTTCCTGGTTTCTGGCTACGTGCTCGTCGCGGTTGTATTCGTTGAT
TTTCCTGGGTCCTTCCCACTAGCAACAACAATTGATCTGGCTGGGATTTG
TTTGTTTGTTTTTGCGTAGAATCAACCGCCTCTCCGTCGCGCAACAAAAC
CGGTTTGTTTTGTGTCTACCGAAACCGTTCCAAACACGGCGGGGCGGGCA
GGCGGTGGTGAGGTCGGAAGCCAAGCCGTTTCGCGAGGCGAGGAACAATC
TGCCGGCGCTCCGAGAGGCCACAAGATGGGCGGCCATCGAGCCATCGTGG
GGCTATGCTCGAGCTTTGGCTTCGGAGCTGTCCTGGCGCAGAGAAAACGC
CGCGCCCGCTGCGGTGTGTGGGGGGGTACACGTAGCAGCAGCAGCAGCGC
AGATGGTGGCGGAAGTTGATTCGGGGTCACCAGCCCCAGGCGAGCCGGCG
GTGGGTGCACAGAGCGCGACAGTTGTACAAGAGGAGCAGGGGGGCGACGT
GGATGTGTACTGCATCTGCAGGGGGGGGGACGACGGCGGCGTGATGGTGG
AGTGCGACCTGTGCGGGGAGTGGTACCATTCGTCCTGGTGAGAGGCGTCG
GTTGTTTTGTTGCGGCAGTTGCATTTTCTTTGTCGCCAACATACCGCTCT
ATTGTTGTGGTTATGTGGCGGCAATTGCATCTTCTTTGCCGTCGACCCCC
CCACCCCCCACCCCCCTCTATCTTTGTTCTCCTTGCACACGTACGGTACT
TTTTGAGCGATCCCTTTCGAGTCGATGAAGTGTGTAGTTGCAGTTTTTAT
GCCCGACTTCCTCCCCCCCTCTCCCTCACTCATGCTTTGCCCTCTAACCG
ACGCCATCCCCCACTCGCGCTTTGTTCACCTTTCCACAAAACTTGCCGGC
CGTCCGGTTCTTTCCGTCTCCAAAACGTAAACCTATGCCGCCTCCCGGGG
CAGTGTGGGGTTAAGAGCGCAGACGGCGGGTGAGCTGCAGCAGTACCGGT
GCCTGGTGTGCTGCGAGGCGCAACCAGAGAAGCACGGCCCTTACAAGCAC
AGGTGCAGACAAGGGAGTCGGGTTAGATATTGTTCTTCGTCTCCGACTGT
TGATACCACTTCGTTGTTTCGGGAAGAGGGTGACACGTTTGATCAAATGT
TCCACCTGGACGAGCAAACGTCGGGGAGGGATTTTTTTTTGTATGGCGCA
TCGCGCTATGGTTCGCGTAGAACGTGCGTAAAAATCTGTCTTGCATGATT
GTGCTGGAGATGCTTGTCCGTCCTGGCGATATCCGTCTGTTGGCGAATGC
GACCGGTGAGGGTAAAGGAGGGGCGGCGTGCATCATGGCTCCGCGCGGAG
GACGATATTAGAGTGCTCCAGCATACTCACAGAACAACCTGATCCGGGTT
TCATCCCAATCATTTGTGCGTGTGTCAAGTTGGGACGTGACGTTTCGCCT
GCTTGTTTTTCGGCCGAATGGCTCGTGCCAGTTCGGTGCCCATCGAGGCT
GCCGTGTAGCCACTCACCACTGCAGAGATGCCATCCACAAGATACAACTC
CGTTCCGACCAGGCGCCCTGCCCTACCCGTACACATACTCACCTCGTTGC
CGTGCGTGCTCGTCCGTGGGTCGTCAGGTGGTCGACTAACGTGGCCATCG
AAGCTGCCGTGCGCCGAGCAACCCCCCGCAGGACCGCCAACAGCAGCAAC
AATCAGAACCCAAAACCGACACAGCAGCAGCAGCAGCAGCAACTGCCAAA
AGAAATCAGCAGCAGCACGGGCGAAGAAGAGGGTGCGGACGGGCGCAGAT
TCGACTCCCCCAGGAGATTGCCTCGTTTAACCGGAAATGCAGCCACCTCT
CCAGCTGGCGGCGAGCGTTCGGTTGGTCCTTCCGCGCCGAATTTTTCTGA
CGCCAGCGGTTCGGCCGGCGGTGGTAGCGGCGAAGGAGCGGCTTCTGACG
GCGGTAACGGCGGCGACGATTATCATCCGGTAGCCGACGGCAGCCCCCCG
GTCGTCGTCGGAATACAGGCGGCCGCAGAATCAGCCGGCTTGGCTTCCAA
GCGCCTCCGGGACAACGGGTCGTCCCGCCACGGCGGTGGCGGTGATGACC
GCCCGGGGGCTAAGCGTGCCCGGGCGGCGGGGTCGGTGGCGAGGTGCGTC
GAGTCGGTGGCGCGAGAGTTCACCGGTCTGGGAATCCCTTTCCCCCCGCC
GGCGGCGGCCCATAGCCCCCTGAAAGAGGCACCGGCAGTTGCGGCGTCGG
CGTCGGCGGCTGCGCCGGCGGCGGAACGCTGCTGCCGCCGTACTGGCGTT
GTTGCCAGAGTCATGGGAAGCGAGGCACCGCCTGCGGAGAGGTGTTGTGC
TGCGCTTGTTGTTGACGACGCGCAGGAGGTGGCGGCACTCGATGCGAAGC
CGGCGGCGGCGGCGGCGGCCGGCGGTAGCGGCGCTGGTGTGGTTGCCCGG
GCCAGGGGAAGCGAGTCTTCTTCGGGATACGGGGTGGGCTGTGCTGCTCC
CGCCTTCGAGGAGAGGACCTTTGATGACACGTGTCGTCCAGGGGTTGGGA
AGGGACGGGAGGGGGGTGGTGGAGAGCAAGAAGGGAAGGAAGCGGGGGCG
TTGTCACAACCCGTGGTGCTCCGTCCTCCTCCGATGGCGGAGATTCTCGC
TGGAGCTGGGTTGGTCGGCAGCAGCGCCGGTAGTAGTAGCAGTGGCGGTG
CGGAGCAAGGGTTTGGTGTTGTTACCCGTCACAGGCCCCAGCTCGGCAGC
GGCAGTCGCCATGTGTACCTGCACGAGCAACAGCACCACCGGCAGCACCA
ACAACACCAAACTCTGAAGCAAGGTAAAGGATACGGCTGTGACATGGTGT
GGGCGCCGCCGCCGCCGCCGCCGCTACCGTCAGTCCCGGGGATCACCCCC
GCACCGCACACCCAACACTCCAGCAGCACAGAGCCGCCATCGCCGACAAG
CGGGGTGCTGCCGTTCGGTGTTGTTCCCGCTGCTAAGCCTTCTGCGGTGG
GGTCCCACGCCCGGCGGCTTCAGGCGGCCCGCCCCAGTTTCCACGGCGAC
GGCGGGAGTCACAACGGCGGTCGAAGGGAGGACCGCGCCGGCATGTTGCT
CGAAAAACGAAGCGCTGGCGGCACCCGCGGGCGGGTCGTCGGTGCAAAGA
CAAGCACGGCCGTCGTGACGGCGGCGTTGGCATGGACCAGCCACGAACAG
AGGCCAACCGCTACTACTACTACTGTTGTCGGACGCAATCAGGCCGAAGC
GCGCAGCACGGGGGCGGGGAGCTCGAAAGGTACATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1407:11164..16950-

>mRNA_Ecto-sp13_S_contig1407.3179.1 ID=mRNA_Ecto-sp13_S_contig1407.3179.1|Name=mRNA_Ecto-sp13_S_contig1407.3179.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2922bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:11164..16950- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACCAGGTGGTGGGTTGGAGGGACCGGTGTGAAGGCGCCGTGAA
GGAGTTCCAGGCGTACATCCAGGGCGGGGACACGGCAGAAGCAACGGCGA
TGATGGGAGGGACACCGCCGCCGCCGCCGCCTTCGGCAGGGCTCGTGCTT
TCCTCCGTAGGGCGAAGGCTTGGGTTTGAGGCCTCGCTCGTGGAGAGGCT
GGGCAGGCTGATATGCGAGGGGGCGCTGATCGAGGTGGTAGACGTGCACA
AAGAGGACACCATGCTGCGAAGAGCCCTTTGGACCCTGACGGCCTCGCTG
TGCTTTCCTCAGGCGGCGGCTTGCCTAAGGCTGGGTCAAGAACCAGGGCT
GGAGGAAACCCTGTCCCCGGAAGACCAAGAGGCCTTGCGATCGAGTGGCC
TGTCTCACGACAGCACCACGAGGCTACGGCCCACCTTCGAAACCCTCGAG
GCTTGCCTCACGGAAGGCCGTACGCTCGGGCTGTCGCGAACCAAGTCCAA
AGGCCGGAGAAGTTCCGCCGGTGCCACTGGCGGTGGCGGTGGTAAGGGGG
AGGTGCCGAACAAAGAACCATCGTCTACTAGCAATGGTGTGGTGTCCCCG
TCGGCGTCTTCGTTGTCTGGTTCGGCCTCCTCCGTGTCGGTGGCGGCGGC
GGCGGCGGCGGCGGCGGCGACTACGTCTTGCTCCCCTCTGGCGGGCGAGA
GGCCTAGCTCGGAGCCTCTGGCCACGGGGGTGCGATTGTACACATGCTTG
TTCAATGCCGTGGGTAATATCCTTCAGGCGGTGGTGAGGTCGGAAGCCAA
GCCGTTTCGCGAGGCGAGGAACAATCTGCCGGCGCTCCGAGAGGCCACAA
GATGGGCGGCCATCGAGCCATCGTGGGGCTATGCTCGAGCTTTGGCTTCG
GAGCTGTCCTGGCGCAGAGAAAACGCCGCGCCCGCTGCGGTGTGTGGGGG
GGTACACGTAGCAGCAGCAGCAGCGCAGATGGTGGCGGAAGTTGATTCGG
GGTCACCAGCCCCAGGCGAGCCGGCGGTGGGTGCACAGAGCGCGACAGTT
GTACAAGAGGAGCAGGGGGGCGACGTGGATGTGTACTGCATCTGCAGGGG
GGGGGACGACGGCGGCGTGATGGTGGAGTGCGACCTGTGCGGGGAGTGGT
ACCATTCGTCCTGTGTGGGGTTAAGAGCGCAGACGGCGGGTGAGCTGCAG
CAGTACCGGTGCCTGGTGTGCTGCGAGGCGCAACCAGAGAAGCACGGCCC
TTACAAGCACAGGTGGTCGACTAACGTGGCCATCGAAGCTGCCGTGCGCC
GAGCAACCCCCCGCAGGACCGCCAACAGCAGCAACAATCAGAACCCAAAA
CCGACACAGCAGCAGCAGCAGCAGCAACTGCCAAAAGAAATCAGCAGCAG
CACGGGCGAAGAAGAGGGTGCGGACGGGCGCAGATTCGACTCCCCCAGGA
GATTGCCTCGTTTAACCGGAAATGCAGCCACCTCTCCAGCTGGCGGCGAG
CGTTCGGTTGGTCCTTCCGCGCCGAATTTTTCTGACGCCAGCGGTTCGGC
CGGCGGTGGTAGCGGCGAAGGAGCGGCTTCTGACGGCGGTAACGGCGGCG
ACGATTATCATCCGGTAGCCGACGGCAGCCCCCCGGTCGTCGTCGGAATA
CAGGCGGCCGCAGAATCAGCCGGCTTGGCTTCCAAGCGCCTCCGGGACAA
CGGGTCGTCCCGCCACGGCGGTGGCGGTGATGACCGCCCGGGGGCTAAGC
GTGCCCGGGCGGCGGGGTCGGTGGCGAGGTGCGTCGAGTCGGTGGCGCGA
GAGTTCACCGGTCTGGGAATCCCTTTCCCCCCGCCGGCGGCGGCCCATAG
CCCCCTGAAAGAGGCACCGGCAGTTGCGGCGTCGGCGTCGGCGGCTGCGC
CGGCGGCGGAACGCTGCTGCCGCCGTACTGGCGTTGTTGCCAGAGTCATG
GGAAGCGAGGCACCGCCTGCGGAGAGGTGTTGTGCTGCGCTTGTTGTTGA
CGACGCGCAGGAGGTGGCGGCACTCGATGCGAAGCCGGCGGCGGCGGCGG
CGGCCGGCGGTAGCGGCGCTGGTGTGGTTGCCCGGGCCAGGGGAAGCGAG
TCTTCTTCGGGATACGGGGTGGGCTGTGCTGCTCCCGCCTTCGAGGAGAG
GACCTTTGATGACACGTGTCGTCCAGGGGTTGGGAAGGGACGGGAGGGGG
GTGGTGGAGAGCAAGAAGGGAAGGAAGCGGGGGCGTTGTCACAACCCGTG
GTGCTCCGTCCTCCTCCGATGGCGGAGATTCTCGCTGGAGCTGGGTTGGT
CGGCAGCAGCGCCGGTAGTAGTAGCAGTGGCGGTGCGGAGCAAGGGTTTG
GTGTTGTTACCCGTCACAGGCCCCAGCTCGGCAGCGGCAGTCGCCATGTG
TACCTGCACGAGCAACAGCACCACCGGCAGCACCAACAACACCAAACTCT
GAAGCAAGGTAAAGGATACGGCTGTGACATGGTGTGGGCGCCGCCGCCGC
CGCCGCCGCTACCGTCAGTCCCGGGGATCACCCCCGCACCGCACACCCAA
CACTCCAGCAGCACAGAGCCGCCATCGCCGACAAGCGGGGTGCTGCCGTT
CGGTGTTGTTCCCGCTGCTAAGCCTTCTGCGGTGGGGTCCCACGCCCGGC
GGCTTCAGGCGGCCCGCCCCAGTTTCCACGGCGACGGCGGGAGTCACAAC
GGCGGTCGAAGGGAGGACCGCGCCGGCATGTTGCTCGAAAAACGAAGCGC
TGGCGGCACCCGCGGGCGGGTCGTCGGTGCAAAGACAAGCACGGCCGTCG
TGACGGCGGCGTTGGCATGGACCAGCCACGAACAGAGGCCAACCGCTACT
ACTACTACTGTTGTCGGACGCAATCAGGCCGAAGCGCGCAGCACGGGGGC
GGGGAGCTCGAAAGGTACATAG
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