mRNA_Ecto-sp13_S_contig1407.3177.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1407.3177.1
Unique NamemRNA_Ecto-sp13_S_contig1407.3177.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1407.3177.1 vs. uniprot
Match: D8LN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN49_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 1.500e-117
Identity = 174/195 (89.23%), Postives = 181/195 (92.82%), Query Frame = 1 
Query:    4 WLTLLIGHILV-------TVCPHSKRHSGAQFVEGVLEDSGLNMPLVLLNDGYGSESFKQVDEIRRFVGRSERARLDLLASPRTFAELRSFAAKLADPASRLRTLREEVEQMEASLWHRNMWMACHVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELTNKKEEIELDIVDEQELRAAQGVSAFLDYMCA 567
            WLT+L GH+L        TV P +KRH+GAQFVEGVLEDSGLNMPLVLLNDGYGSESFKQVDEIRRFVGRSERARLD LASPRTFAELRSFAAKLADPASRLRTLREEVEQMEASLWHR++WMACHVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKEL +KKEEIELDIVDEQEL AAQGVSAFLDYMCA
Sbjct:    2 WLTILTGHLLALFVLYPTTVRPCTKRHAGAQFVEGVLEDSGLNMPLVLLNDGYGSESFKQVDEIRRFVGRSERARLDPLASPRTFAELRSFAAKLADPASRLRTLREEVEQMEASLWHRSLWMACHVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELNDKKEEIELDIVDEQELCAAQGVSAFLDYMCA 196
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BLAST of mRNA_Ecto-sp13_S_contig1407.3177.1 vs. uniprot
Match: A0A6H5JSX4_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX4_9PHAE)

HSP 1 Score: 316 bits (809), Expect = 7.980e-106
Identity = 159/171 (92.98%), Postives = 166/171 (97.08%), Query Frame = 1 
Query:   55 KRHSGAQFVEGVLEDSGLNMPLVLLNDGYGSESFKQVDEIRRFVGRSERARLDLLASPRTFAELRSFAAKLADPASRLRTLREEVEQMEASLWHRNMWMACHVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELTNKKEEIELDIVDEQELRAAQGVSAFLDYMCA 567
            +RHSGAQFVEGVL+DSGLNMPLVLLNDGYGSES KQVDEIRRFVGRSERARLDL+AS RTFAELRSFAAKLADPASRLRT+REEVEQMEASLWHR++WMAC VVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKEL +KKEEIELDIVDEQELRAAQGV AFLDYMCA
Sbjct:  170 RRHSGAQFVEGVLDDSGLNMPLVLLNDGYGSESIKQVDEIRRFVGRSERARLDLVASLRTFAELRSFAAKLADPASRLRTVREEVEQMEASLWHRSLWMACQVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELNDKKEEIELDIVDEQELRAAQGVLAFLDYMCA 340
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1407.3177.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN49_ECTSI1.500e-11789.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSX4_9PHAE7.980e-10692.98G domain-containing protein n=1 Tax=Ectocarpus sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1407contigEcto-sp13_S_contig1407:5824..6615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size570
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_003480.1
Cds size570
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.8003306-CDS-Ecto-sp13_S_contig1407:5823..59281681462751.8003306-CDS-Ecto-sp13_S_contig1407:5823..5928Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 5824..5928 -
1681462751.8100178-CDS-Ecto-sp13_S_contig1407:6150..66151681462751.8100178-CDS-Ecto-sp13_S_contig1407:6150..6615Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 6151..6615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1407.3177.1prot_Ecto-sp13_S_contig1407.3177.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1407 5824..6615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1407.3177.1

>prot_Ecto-sp13_S_contig1407.3177.1 ID=prot_Ecto-sp13_S_contig1407.3177.1|Name=mRNA_Ecto-sp13_S_contig1407.3177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp
IWLTLLIGHILVTVCPHSKRHSGAQFVEGVLEDSGLNMPLVLLNDGYGSE
SFKQVDEIRRFVGRSERARLDLLASPRTFAELRSFAAKLADPASRLRTLR
EEVEQMEASLWHRNMWMACHVVPLAYISVSSPGAGCIWTGPYVKREQEAC
ARLRKELTNKKEEIELDIVDEQELRAAQGVSAFLDYMCA*
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mRNA from alignment at Ecto-sp13_S_contig1407:5824..6615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1407.3177.1 ID=mRNA_Ecto-sp13_S_contig1407.3177.1|Name=mRNA_Ecto-sp13_S_contig1407.3177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:5824..6615- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTGGCTGACCCTCCTCATCGGGCACATACTTGTAACCGTCTGCCCTCA
TTCCAAAAGGCATTCAGGCGCCCAGTTCGTTGAGGGCGTGCTGGAAGACA
GCGGCCTGAACATGCCGCTGGTGTTGCTCAACGACGGGTACGGAAGCGAA
TCGTTCAAGCAGGTGGACGAGATCCGTCGGTTCGTTGGCCGGTCGGAACG
CGCCCGGTTAGACCTCCTCGCCTCTCCTCGGACGTTCGCCGAGCTCAGAT
CCTTCGCGGCGAAGCTGGCCGATCCGGCGTCTCGCCTGCGTACCTTGCGA
GAGGAGGTAGAGCAGATGGAGGCGTCGCTGTGGCACCGTAACATGTGGAT
GGCGTGCCACGTGGTGCCGCTGGCGTACATTTCGGTGTCCTCGCCGGGGG
CGGGGTGTATATGGACTGGGCCGTACGTAAAGCGGGAGCAGGAGGCCTGC
GCCAGGCTGAGGAAGGTGCGTGCTTACAGCGAAAAAAAGTTGTTGTGACG
TCACACGTATTTTCGACAATGGGCGAGGCCCTCTGTGCCTTGTCACGATT
GCACTCCATACCCAGTGGGTGCAGATGTGTCTCATGCCAGAAAGGGCCAT
GAGACCTGTCTCCAACCAGGAAGAAAAAATCACTCTTGCTGCCCCGCTTG
CACACTTCCCTACCACATGGTACTGCCGTGCGCTCAGGAACTCACCAATA
AGAAAGAGGAGATCGAGCTCGACATTGTCGACGAACAGGAGTTGCGCGCT
GCGCAGGGTGTCTCGGCATTCCTCGACTACATGTGCGCCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1407:5824..6615-

>mRNA_Ecto-sp13_S_contig1407.3177.1 ID=mRNA_Ecto-sp13_S_contig1407.3177.1|Name=mRNA_Ecto-sp13_S_contig1407.3177.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:5824..6615- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCTGGCTGACCCTCCTCATCGGGCACATACTTGTAACCGTCTGCCCTCA
TTCCAAAAGGCATTCAGGCGCCCAGTTCGTTGAGGGCGTGCTGGAAGACA
GCGGCCTGAACATGCCGCTGGTGTTGCTCAACGACGGGTACGGAAGCGAA
TCGTTCAAGCAGGTGGACGAGATCCGTCGGTTCGTTGGCCGGTCGGAACG
CGCCCGGTTAGACCTCCTCGCCTCTCCTCGGACGTTCGCCGAGCTCAGAT
CCTTCGCGGCGAAGCTGGCCGATCCGGCGTCTCGCCTGCGTACCTTGCGA
GAGGAGGTAGAGCAGATGGAGGCGTCGCTGTGGCACCGTAACATGTGGAT
GGCGTGCCACGTGGTGCCGCTGGCGTACATTTCGGTGTCCTCGCCGGGGG
CGGGGTGTATATGGACTGGGCCGTACGTAAAGCGGGAGCAGGAGGCCTGC
GCCAGGCTGAGGAAGGAACTCACCAATAAGAAAGAGGAGATCGAGCTCGA
CATTGTCGACGAACAGGAGTTGCGCGCTGCGCAGGGTGTCTCGGCATTCC
TCGACTACATGTGCGCCTAG
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