mRNA_Ecto-sp13_S_contig1407.3176.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1407.3176.1
Unique NamemRNA_Ecto-sp13_S_contig1407.3176.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1407.3176.1 vs. uniprot
Match: A0A6H5JMT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT4_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 8.540e-5
Identity = 24/26 (92.31%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:    1 VLDPVSKLWRSVNGDGGVDASSPVGR 78
            VLDPVSK WRSVN DGGVDASSPVGR
Sbjct:  426 VLDPVSKRWRSVNRDGGVDASSPVGR 451
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1407.3176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JMT4_9PHAE8.540e-592.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1407contigEcto-sp13_S_contig1407:3062..3954 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size446
Hectar predicted targeting categoryother localisation
Exons2
Cds size444
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.7605388-CDS-Ecto-sp13_S_contig1407:3061..31381681462751.7605388-CDS-Ecto-sp13_S_contig1407:3061..3138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 3062..3138 +
1681462751.7692218-CDS-Ecto-sp13_S_contig1407:3587..39541681462751.7692218-CDS-Ecto-sp13_S_contig1407:3587..3954Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 3588..3954 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1407.3176.1prot_Ecto-sp13_S_contig1407.3176.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1407 3062..3954 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1407.3176.1

>prot_Ecto-sp13_S_contig1407.3176.1 ID=prot_Ecto-sp13_S_contig1407.3176.1|Name=mRNA_Ecto-sp13_S_contig1407.3176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
VLDPVSKLWRSVNGDGGVDASSPVGRYSTSVAMVKTLPGSSTDDSTHGLL
ILFGGKDDWRRLDELWRLDLRSVHVTTSTTASSSDALQATPRPHTQGSWS
LAELGRDARCAHALVAGTANDTWHSSCGDGAIWGGSGEDSCTMAAVLE
back to top

mRNA from alignment at Ecto-sp13_S_contig1407:3062..3954+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1407.3176.1 ID=mRNA_Ecto-sp13_S_contig1407.3176.1|Name=mRNA_Ecto-sp13_S_contig1407.3176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:3062..3954+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGGACCCCGTGTCCAAACTTTGGCGCTCCGTCAATGGCGATGGCGG
GGTCGACGCGTCCTCGCCGGTGGGCAGGCAAGACGACAATCCGCCTTTCT
TTTCTGTTGCACTGTTGAAGAGGCTTGCTTTACCCGCTAGAAAGAGAAGC
TACTTTGTCGATGATAACAGTGTGAAGACTGCGAGACGAGGGGTTTGGGT
GTGGGACATTCACTTGAGTTGGGACGTAAATCGGCTACGCATGGTAGGCT
AGGATATAGTCTACGGTTTGCTTCTCATAGTGGGGGAGGGGATGGTTACC
ATGGCCAACCCTTGCCGGGCTGGTGTTGCGAAGAAGGGATGGCCCTGCCC
AAAACGTCCTGCACGCAATACTGGTTGAATCACAAAGCGGACGAGGTTAT
TCTCGCAGCATCATTTGGAGACAGATGGCAAGAGGGCCTGAAGTAGTCTA
CACAACAAACAAAGCAGGTTCTTGAGTCAAAGGTTGCTGGGTATTAACCG
CTTGTAATGCGTTGTCTCCCGCACAGGTATTCCACCTCCGTGGCGATGGT
GAAGACCTTGCCAGGTAGCTCGACTGATGACAGCACACACGGGCTGTTGA
TACTCTTCGGGGGAAAGGACGATTGGCGGAGATTGGATGAGCTTTGGAGA
CTTGACCTTCGCTCCGTCCACGTGACTACGTCTACCACGGCCTCGAGCAG
CGACGCGCTGCAGGCCACGCCAAGGCCGCACACGCAAGGCAGCTGGTCCC
TGGCTGAGCTGGGAAGGGACGCTCGCTGTGCGCACGCCCTGGTTGCAGGC
ACCGCAAACGACACGTGGCATTCTTCGTGCGGAGACGGGGCCATTTGGGG
GGGGAGCGGGGAGGACAGCTGCACGATGGCCGCGGTATTGGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1407:3062..3954+

>mRNA_Ecto-sp13_S_contig1407.3176.1 ID=mRNA_Ecto-sp13_S_contig1407.3176.1|Name=mRNA_Ecto-sp13_S_contig1407.3176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:3062..3954+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTTGGACCCCGTGTCCAAACTTTGGCGCTCCGTCAATGGCGATGGCGG
GGTCGACGCGTCCTCGCCGGTGGGCAGGTATTCCACCTCCGTGGCGATGG
TGAAGACCTTGCCAGGTAGCTCGACTGATGACAGCACACACGGGCTGTTG
ATACTCTTCGGGGGAAAGGACGATTGGCGGAGATTGGATGAGCTTTGGAG
ACTTGACCTTCGCTCCGTCCACGTGACTACGTCTACCACGGCCTCGAGCA
GCGACGCGCTGCAGGCCACGCCAAGGCCGCACACGCAAGGCAGCTGGTCC
CTGGCTGAGCTGGGAAGGGACGCTCGCTGTGCGCACGCCCTGGTTGCAGG
CACCGCAAACGACACGTGGCATTCTTCGTGCGGAGACGGGGCCATTTGGG
GGGGGAGCGGGGAGGACAGCTGCACGATGGCCGCGGTATTGGAG
back to top