prot_Ecto-sp13_S_contig1407.3175.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1407.3175.1
Unique Nameprot_Ecto-sp13_S_contig1407.3175.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length105
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1407.3175.1 vs. uniprot
Match: D8LN48_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN48_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.000e-56
Identity = 97/105 (92.38%), Postives = 98/105 (93.33%), Query Frame = 0 
Query:    1 LYGPGPPPGDTSRLGGVSRAEPAVLVLGGGISDCASDVDLFGDGNNGPAGDVSYGGCVDRMDVSFEDSAASGVLEGCNNRSPLRGTFKAADRLLVGRFLRMPAEG 105
            LYGPGPPPGDTS LG VSRAEPAVLVLGGGISDCASDVDLFGDGN+G AGD SYGGCVD MDVSFEDSA SGV EGCNNRSPLRGTFKAADRLLVGRFLRMPAEG
Sbjct: 1105 LYGPGPPPGDTSPLGDVSRAEPAVLVLGGGISDCASDVDLFGDGNDGAAGDASYGGCVDGMDVSFEDSAESGVWEGCNNRSPLRGTFKAADRLLVGRFLRMPAEG 1209
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1407.3175.1 vs. uniprot
Match: A0A6H5JMT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT4_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.780e-56
Identity = 95/105 (90.48%), Postives = 97/105 (92.38%), Query Frame = 0 
Query:    1 LYGPGPPPGDTSRLGGVSRAEPAVLVLGGGISDCASDVDLFGDGNNGPAGDVSYGGCVDRMDVSFEDSAASGVLEGCNNRSPLRGTFKAADRLLVGRFLRMPAEG 105
            LYGPGPPPGDTSRLG VSRAEPAVLVLGGGI+DCASDVDLFGDG +G AGDVSYGGCVDRMDVSFEDSA SGV EGCNNR   RGTFKAADRLLVGRFLRMPAEG
Sbjct:  167 LYGPGPPPGDTSRLGDVSRAEPAVLVLGGGIADCASDVDLFGDGIDGAAGDVSYGGCVDRMDVSFEDSAESGVWEGCNNR---RGTFKAADRLLVGRFLRMPAEG 268
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1407.3175.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN48_ECTSI1.000e-5692.38Fibronectin type-III domain-containing protein n=1... [more]
A0A6H5JMT4_9PHAE3.780e-5690.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1407contigEcto-sp13_S_contig1407:1511..2247 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1407.3175.1mRNA_Ecto-sp13_S_contig1407.3175.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1407 1511..2248 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1407.3175.1 ID=prot_Ecto-sp13_S_contig1407.3175.1|Name=mRNA_Ecto-sp13_S_contig1407.3175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
LYGPGPPPGDTSRLGGVSRAEPAVLVLGGGISDCASDVDLFGDGNNGPAG
DVSYGGCVDRMDVSFEDSAASGVLEGCNNRSPLRGTFKAADRLLVGRFLR
MPAEG
back to top