mRNA_Ecto-sp13_S_contig1407.3175.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1407.3175.1
Unique NamemRNA_Ecto-sp13_S_contig1407.3175.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1407.3175.1 vs. uniprot
Match: D8LN48_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN48_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.000e-56
Identity = 97/105 (92.38%), Postives = 98/105 (93.33%), Query Frame = 1 
Query:    1 LYGPGPPPGDTSRLGGVSRAEPAVLVLGGGISDCASDVDLFGDGNNGPAGDVSYGGCVDRMDVSFEDSAASGVLEGCNNRSPLRGTFKAADRLLVGRFLRMPAEG 315
            LYGPGPPPGDTS LG VSRAEPAVLVLGGGISDCASDVDLFGDGN+G AGD SYGGCVD MDVSFEDSA SGV EGCNNRSPLRGTFKAADRLLVGRFLRMPAEG
Sbjct: 1105 LYGPGPPPGDTSPLGDVSRAEPAVLVLGGGISDCASDVDLFGDGNDGAAGDASYGGCVDGMDVSFEDSAESGVWEGCNNRSPLRGTFKAADRLLVGRFLRMPAEG 1209
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BLAST of mRNA_Ecto-sp13_S_contig1407.3175.1 vs. uniprot
Match: A0A6H5JMT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT4_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 3.780e-56
Identity = 95/105 (90.48%), Postives = 97/105 (92.38%), Query Frame = 1 
Query:    1 LYGPGPPPGDTSRLGGVSRAEPAVLVLGGGISDCASDVDLFGDGNNGPAGDVSYGGCVDRMDVSFEDSAASGVLEGCNNRSPLRGTFKAADRLLVGRFLRMPAEG 315
            LYGPGPPPGDTSRLG VSRAEPAVLVLGGGI+DCASDVDLFGDG +G AGDVSYGGCVDRMDVSFEDSA SGV EGCNNR   RGTFKAADRLLVGRFLRMPAEG
Sbjct:  167 LYGPGPPPGDTSRLGDVSRAEPAVLVLGGGIADCASDVDLFGDGIDGAAGDVSYGGCVDRMDVSFEDSAESGVWEGCNNR---RGTFKAADRLLVGRFLRMPAEG 268
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1407.3175.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN48_ECTSI1.000e-5692.38Fibronectin type-III domain-containing protein n=1... [more]
A0A6H5JMT4_9PHAE3.780e-5690.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1407contigEcto-sp13_S_contig1407:1511..2248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score199.9
Seed ortholog evalue5.9e-49
Seed eggNOG ortholog2880.D8LN48
Model size317
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Fibronectin type 3 domain
EggNOG OGs2CY7P@1,2S2K7@2759
Cds size315
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.6930332-CDS-Ecto-sp13_S_contig1407:1510..17521681462751.6930332-CDS-Ecto-sp13_S_contig1407:1510..1752Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 1511..1752 +
1681462751.731564-CDS-Ecto-sp13_S_contig1407:2174..22471681462751.731564-CDS-Ecto-sp13_S_contig1407:2174..2247Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 2175..2247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1407.3175.1prot_Ecto-sp13_S_contig1407.3175.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1407 1511..2247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1407.3175.1

>prot_Ecto-sp13_S_contig1407.3175.1 ID=prot_Ecto-sp13_S_contig1407.3175.1|Name=mRNA_Ecto-sp13_S_contig1407.3175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
LYGPGPPPGDTSRLGGVSRAEPAVLVLGGGISDCASDVDLFGDGNNGPAG
DVSYGGCVDRMDVSFEDSAASGVLEGCNNRSPLRGTFKAADRLLVGRFLR
MPAEG
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mRNA from alignment at Ecto-sp13_S_contig1407:1511..2248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1407.3175.1 ID=mRNA_Ecto-sp13_S_contig1407.3175.1|Name=mRNA_Ecto-sp13_S_contig1407.3175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=738bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:1511..2248+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTACGGCCCTGGACCACCCCCGGGAGACACGAGCCGGCTCGGAGGCGT
GTCGAGAGCTGAGCCGGCCGTGCTGGTACTTGGCGGTGGCATCTCAGACT
GTGCGTCCGACGTCGATCTGTTTGGGGATGGAAATAACGGTCCGGCGGGC
GACGTTTCCTATGGAGGGTGCGTGGATCGAATGGACGTATCCTTCGAAGA
TTCTGCGGCGAGCGGCGTGTTGGAGGGCTGCAACAACAGGAGGTACGCAC
GCGCCGGCGACGGTGTCAAGTGTCTCACCGTTGCAACCTCGTCGATATCA
GCGATATACGTTCTGGTACGACACGCCGGAACCATGCACGAGGTCCACGC
GACAAGGCCAGCGAGACTAAGATTTTCCGGCCACACGTTTGGAGTCTAGA
CTACGTACGTGGATTCTTGGCCGCCCCTACTTCTTCCGCATGGTTCGCAG
TCCCCTTCACACCTGTGATATAGCCTGAAGGTTGGAAACGTAGGTTCGCA
ACGTATGACTCGAAAACCACGAGCCAGGTGCGGGAAGCGATGTGGTAACT
AGACCCCCTTTCCTCGATCGCTTACTCTACTGAAACGCCGCTGTGGACAT
GAACACGTGCACCGTAACAAGATAAATTTCGGTACTCCCCATGTTTTGTA
CACCAATCGTGAAGTCCGCTCAGGGGGACATTCAAGGCCGCAGATCGGTT
GTTGGTTGGTCGGTTCCTCCGCATGCCGGCCGAAGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1407:1511..2248+

>mRNA_Ecto-sp13_S_contig1407.3175.1 ID=mRNA_Ecto-sp13_S_contig1407.3175.1|Name=mRNA_Ecto-sp13_S_contig1407.3175.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:1511..2248+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCTACGGCCCTGGACCACCCCCGGGAGACACGAGCCGGCTCGGAGGCGT
GTCGAGAGCTGAGCCGGCCGTGCTGGTACTTGGCGGTGGCATCTCAGACT
GTGCGTCCGACGTCGATCTGTTTGGGGATGGAAATAACGGTCCGGCGGGC
GACGTTTCCTATGGAGGGTGCGTGGATCGAATGGACGTATCCTTCGAAGA
TTCTGCGGCGAGCGGCGTGTTGGAGGGCTGCAACAACAGGAGTCCGCTCA
GGGGGACATTCAAGGCCGCAGATCGGTTGTTGGTTGGTCGGTTCCTCCGC
ATGCCGGCCGAAGGG
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