mRNA_Ecto-sp13_S_contig1407.3174.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1407.3174.1
Unique NamemRNA_Ecto-sp13_S_contig1407.3174.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1407.3174.1 vs. uniprot
Match: A0A6H5JMT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT4_9PHAE)

HSP 1 Score: 148 bits (374), Expect = 9.110e-41
Identity = 72/87 (82.76%), Postives = 80/87 (91.95%), Query Frame = 1 
Query:    4 AELWEFNPSTSVWTEVLVDVGGDAPAARDGHTASVAGSKMIVFGGRGNESDSNDQARRGSNIALLEDEWEIDLDPSQLITIATSFST 264
            AELWEFNPSTSVWTEVLV++ GDAP ARDGHTASVAGSKMIVFGGRGN+SDS+ QA RGSN ALL+DEWEIDLD SQLIT++T+ ST
Sbjct:   30 AELWEFNPSTSVWTEVLVNIDGDAPPARDGHTASVAGSKMIVFGGRGNKSDSDTQAGRGSNTALLQDEWEIDLDLSQLITMSTNSST 116
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BLAST of mRNA_Ecto-sp13_S_contig1407.3174.1 vs. uniprot
Match: D8LN48_ECTSI (Fibronectin type-III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN48_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 1.950e-39
Identity = 73/88 (82.95%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    1 SAELWEFNPSTSVWTEVLVDVGGDAPAARDGHTASVAGSKMIVFGGRGNESDSNDQARRGSNIALLEDEWEIDLDPSQLITIATSFST 264
            SAELWEFNPSTSVWTEVLV+V G+AP ARDGHTASV GSKM+VFGGRGN SDS+ QA RGSN ALLEDEW IDLD SQLITI+T+FST
Sbjct:  967 SAELWEFNPSTSVWTEVLVNVDGNAPPARDGHTASVVGSKMVVFGGRGNGSDSDAQAGRGSNTALLEDEWAIDLDLSQLITISTNFST 1054
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BLAST of mRNA_Ecto-sp13_S_contig1407.3174.1 vs. uniprot
Match: M2XVR7_GALSU (Uncharacterized protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVR7_GALSU)

HSP 1 Score: 55.8 bits (133), Expect = 5.060e-7
Identity = 26/73 (35.62%), Postives = 38/73 (52.05%), Query Frame = 1 
Query:    7 ELWEFNPSTSVWTEVLVDVGGDAPAARDGHTASVAGSKMIVFGGRGNESDSNDQARRGSNIALLEDEWEIDLD 225
            +LW FN  T +W ++ +   G  P  RDGHT ++ GSK+ +FGGR  E            +  L D W +DL+
Sbjct:  231 DLWRFNVQTGLWKQLKLS--GVQPLPRDGHTTTLRGSKVYLFGGRTCEDPKQSSNCSIKTLTFLNDLWSLDLE 301
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BLAST of mRNA_Ecto-sp13_S_contig1407.3174.1 vs. uniprot
Match: A0A7S2T8F4_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2T8F4_9CHLO)

HSP 1 Score: 51.2 bits (121), Expect = 2.080e-5
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:    7 ELWEFNPSTSVWTEVLVDVGGDA----PAARDGHTA--SVAGSKMIVFGGRGNESDSNDQARRGSNIALLEDEWEID 219
            ++W ++PS   W +   D    A    PA RD H A  S  GSKMI++GGRG   D  D+  + S+  +L D WE+D
Sbjct:  284 DVWAWSPSRGAWFDWTPDYDHTAEVSVPAKRDHHHACSSADGSKMILYGGRG---DPTDEEHQHSHSTVLGDLWELD 357
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BLAST of mRNA_Ecto-sp13_S_contig1407.3174.1 vs. uniprot
Match: A0A1L8F9C4_XENLA (uncharacterized protein LOC108698685 isoform X2 n=4 Tax=Xenopus laevis TaxID=8355 RepID=A0A1L8F9C4_XENLA)

HSP 1 Score: 50.8 bits (120), Expect = 2.920e-5
Identity = 27/85 (31.76%), Postives = 47/85 (55.29%), Query Frame = 1 
Query:    1 SAELWEFNPSTSVWTEVLVDVGGDAPAARDGHTASVAGSKMIVFGGRGNESDSNDQARRGSNIALLEDEWEIDLDPSQLITIATS 255
            S  L+ FNP  ++W + +V+  G+ P  R GHTA++ G+++++FGGR           R  +   L D + +DL   +  T++TS
Sbjct:  399 SNSLYIFNPDYNIWYQPIVE--GERPLPRFGHTATLLGNRVVIFGGR-----------RSPSPVYLNDLYILDLGYMEYSTVSTS 470
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1407.3174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JMT4_9PHAE9.110e-4182.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN48_ECTSI1.950e-3982.95Fibronectin type-III domain-containing protein n=1... [more]
M2XVR7_GALSU5.060e-735.62Uncharacterized protein n=1 Tax=Galdieria sulphura... [more]
A0A7S2T8F4_9CHLO2.080e-538.96Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
A0A1L8F9C4_XENLA2.920e-531.76uncharacterized protein LOC108698685 isoform X2 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1407contigEcto-sp13_S_contig1407:536..811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score147.9
Seed ortholog evalue2.3e-33
Seed eggNOG ortholog2880.D8LN48
Model size276
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Fibronectin type 3 domain
EggNOG OGs2CY7P@1,2S2K7@2759
Cds size276
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.6612031-CDS-Ecto-sp13_S_contig1407:535..8111681462751.6612031-CDS-Ecto-sp13_S_contig1407:535..811Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1407 536..811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1407.3174.1prot_Ecto-sp13_S_contig1407.3174.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1407 536..811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1407.3174.1

>prot_Ecto-sp13_S_contig1407.3174.1 ID=prot_Ecto-sp13_S_contig1407.3174.1|Name=mRNA_Ecto-sp13_S_contig1407.3174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
SAELWEFNPSTSVWTEVLVDVGGDAPAARDGHTASVAGSKMIVFGGRGNE
SDSNDQARRGSNIALLEDEWEIDLDPSQLITIATSFSTVGA*
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mRNA from alignment at Ecto-sp13_S_contig1407:536..811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1407.3174.1 ID=mRNA_Ecto-sp13_S_contig1407.3174.1|Name=mRNA_Ecto-sp13_S_contig1407.3174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:536..811+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCCGAGCTGTGGGAATTCAACCCGTCAACAAGCGTGTGGACGGAAGT
CCTGGTCGACGTCGGCGGAGATGCCCCCGCGGCGCGTGACGGACACACCG
CTAGCGTAGCCGGCTCGAAAATGATTGTCTTCGGTGGTAGGGGGAATGAA
TCCGACTCCAATGATCAAGCCAGGCGGGGGTCGAACATCGCCTTGCTTGA
AGACGAGTGGGAAATCGACCTCGACCCAAGCCAGCTCATCACCATCGCCA
CCAGCTTTTCTACGGTGGGTGCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1407:536..811+

>mRNA_Ecto-sp13_S_contig1407.3174.1 ID=mRNA_Ecto-sp13_S_contig1407.3174.1|Name=mRNA_Ecto-sp13_S_contig1407.3174.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1407:536..811+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCGCCGAGCTGTGGGAATTCAACCCGTCAACAAGCGTGTGGACGGAAGT
CCTGGTCGACGTCGGCGGAGATGCCCCCGCGGCGCGTGACGGACACACCG
CTAGCGTAGCCGGCTCGAAAATGATTGTCTTCGGTGGTAGGGGGAATGAA
TCCGACTCCAATGATCAAGCCAGGCGGGGGTCGAACATCGCCTTGCTTGA
AGACGAGTGGGAAATCGACCTCGACCCAAGCCAGCTCATCACCATCGCCA
CCAGCTTTTCTACGGTGGGTGCCTGA
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