mRNA_Ecto-sp13_S_contig14062.3169.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14062.3169.1
Unique NamemRNA_Ecto-sp13_S_contig14062.3169.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14062.3169.1 vs. uniprot
Match: A0A6H5LE14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LE14_9PHAE)

HSP 1 Score: 588 bits (1516), Expect = 3.930e-196
Identity = 362/398 (90.95%), Postives = 376/398 (94.47%), Query Frame = 1 
Query:    1 SKPEPRVAKPRTRTVVEPLVPPQPPPGPRQWPARPANRALVYVAAAQASRRARGFTGWSFPKLPPALVPPSPPLAIEKPQKEGLGVEEEAPGSEAGGEIEEGSVIAAADRRKKGRKCVESGKLHSFLGLAKDNPPGVPSPNELGWMSLGRMHTPQGRAAIKRQALERKRRALEEIAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXEARRKRRLNVLFLGMTRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVSTPGESDCENSRSTRAHGRPTGLGRFLATDITNTGASRGFLRKIEASCSLLHVVRLIAGIVHPGPCCQPIPGSVTPVF*NEHDSGALP*KEVL 1194
            +KP+ RVAKPRTRTV+EPLVPPQPPPGPRQWPARPANRALVYVAAAQASRRARGFTGWSFPKLPPALVPPS PLA+EKP+KE L VEEE PG++AGG IEEGSV+AAADRRKKGRKCVESGKLHSFLG AKDNPPGVPSPNELGWMSLG MHTP+GRAAIKRQALE KRRALEEIAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXEARRKRRLNVLFLGMTRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVSTPGESDCENSRSTRAHG PTGLGRFLATDITNTGASRGFLRKIEAS SLL VV  IA I+ PGPCCQPIPGSV+P+F +EHD GA   +EV 
Sbjct:  858 NKPDLRVAKPRTRTVMEPLVPPQPPPGPRQWPARPANRALVYVAAAQASRRARGFTGWSFPKLPPALVPPSLPLAVEKPKKEELDVEEETPGADAGGGIEEGSVVAAADRRKKGRKCVESGKLHSFLGFAKDNPPGVPSPNELGWMSLGPMHTPEGRAAIKRQALEEKRRALEEIAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXEARRKRRLNVLFLGMTRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVSTPGESDCENSRSTRAHGGPTGLGRFLATDITNTGASRGFLRKIEASYSLLLVVGRIAVIIRPGPCCQPIPGSVSPIFQDEHDPGADDKREVF 1255
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14062.3169.1 vs. uniprot
Match: D7G392_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G392_ECTSI)

HSP 1 Score: 527 bits (1357), Expect = 1.540e-171
Identity = 333/350 (95.14%), Postives = 339/350 (96.86%), Query Frame = 1 
Query:    1 SKPEPRVAKPRTRTVVEPLVPPQPPPGPRQWPARPANRALVYVAAAQASRRARGFTGWSFPKLPPALVPPSPPLAIEKPQKEGLGVEEEAPGSEAGGEIEEGSVIAAADRRKKGRKCVESGKLHSFLGLAKDNPPGVPSPNELGWMSLGRMHTPQGRAAIKRQALERKRRALEEIAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXEARRKRRLNVLFLGMTRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVSTPGESDCENSRSTRAHGRPTGLGRFLATDITNTGASRGFLRKIE 1050
            SKPEPRVAKPRTRTVVEPLVPPQPPPGPRQWPARPANRALVYVAAAQASRRARGFTGWSFPKLPPALVPP+PPLAIEKP+KE + VEEEAPGSE  G IEEGSV+ AA R KK RKCVESGKLHSFLGLAKDNP GVPSPNELGWMSLGRMHTP+GRAAIKRQALE+KRRALEEIAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXEARRKRRLNVLFLGMTRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVSTPGESDCENSRSTRAHG PTGLGRFLATDITNTGASRGFLRKIE
Sbjct:  859 SKPEPRVAKPRTRTVVEPLVPPQPPPGPRQWPARPANRALVYVAAAQASRRARGFTGWSFPKLPPALVPPTPPLAIEKPKKEEVDVEEEAPGSEERGGIEEGSVVVAAGRGKKVRKCVESGKLHSFLGLAKDNPLGVPSPNELGWMSLGRMHTPEGRAAIKRQALEKKRRALEEIAQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRIXXXXXEARRKRRLNVLFLGMTRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVSTPGESDCENSRSTRAHGGPTGLGRFLATDITNTGASRGFLRKIE 1208
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14062.3169.1 vs. uniprot
Match: A0A6H5K5F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5F0_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.370e-16
Identity = 56/116 (48.28%), Postives = 69/116 (59.48%), Query Frame = 1 
Query:  709 RLNVLFLGMTRVAEYDSR--GGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVST---PGESDCENSRSTRAHGRPTGLGRFLATDITNTGASRGFLR 1041
            R   LFLG+T V E+D+   G L K ++RF  +E+ +R+ V E NMNPLRDT RVLA E  G+ V C+SKVS    PG S         A GRP      L TD++NT ASRG LR
Sbjct:  431 RKRALFLGVTFVEEHDAEFLGELAKRVRRFKTLEKKLRNKVTEGNMNPLRDTIRVLATETQGYRVSCVSKVSVSRGPGSS---------AKGRPVSRRHLLETDMSNTTASRGLLR 537
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14062.3169.1 vs. uniprot
Match: D8LN97_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN97_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.280e-16
Identity = 54/115 (46.96%), Postives = 69/115 (60.00%), Query Frame = 1 
Query:  721 LFLGMTRVAEYDSR--GGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEALGHEVRCISKVST---PGESDCENSRSTRAHGRPTGLGRFLATDITNTGASRGFLRKIE 1050
            LFLG+T V E+D+   G   K ++RF  +E+ +R+ V E NMNPLRDT RVLA E  G+ V C+SKVS    PG S         A GRP      L TD++NT ASRG LR ++
Sbjct:  435 LFLGVTFVEEHDAEFLGERAKRVRRFKTLEKKLRNKVTEGNMNPLRDTVRVLATETQGYRVSCVSKVSVSRGPGSS--------AAKGRPASRRHLLETDMSNTTASRGLLRSVK 541
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14062.3169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5LE14_9PHAE3.930e-19690.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G392_ECTSI1.540e-17195.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K5F0_9PHAE1.370e-1648.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN97_ECTSI2.280e-1646.96EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14062contigEcto-sp13_S_contig14062:1014..3829 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1222
Hectar predicted targeting categoryother localisation
Exons4
Cds size717
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14062.3169.1prot_Ecto-sp13_S_contig14062.3169.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14062 1449..3759 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.266058-UTR-Ecto-sp13_S_contig14062:1013..14481681462751.266058-UTR-Ecto-sp13_S_contig14062:1013..1448Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14062 1014..1448 +
1681462751.3141487-UTR-Ecto-sp13_S_contig14062:3759..38291681462751.3141487-UTR-Ecto-sp13_S_contig14062:3759..3829Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14062 3760..3829 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462751.2817657-CDS-Ecto-sp13_S_contig14062:1448..16911681462751.2817657-CDS-Ecto-sp13_S_contig14062:1448..1691Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14062 1449..1691 +
1681462751.290115-CDS-Ecto-sp13_S_contig14062:2216..23891681462751.290115-CDS-Ecto-sp13_S_contig14062:2216..2389Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14062 2217..2389 +
1681462751.2982867-CDS-Ecto-sp13_S_contig14062:3107..32091681462751.2982867-CDS-Ecto-sp13_S_contig14062:3107..3209Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14062 3108..3209 +
1681462751.3062727-CDS-Ecto-sp13_S_contig14062:3560..37591681462751.3062727-CDS-Ecto-sp13_S_contig14062:3560..3759Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14062 3561..3759 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14062.3169.1

>prot_Ecto-sp13_S_contig14062.3169.1 ID=prot_Ecto-sp13_S_contig14062.3169.1|Name=mRNA_Ecto-sp13_S_contig14062.3169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=239bp
MSLGRMHTPQGRAAIKRQALERKRRALEEIAQRKREELERRRLELEEFAQ
QRRDELEKRRLELERVAYQKRQEILDALRIKEEIAEARRKRRLNVLFLGM
TRVAEYDSRGGLTKGMKRFDLVERMVRDDVNEANMNPLRDTARVLAMEAL
GHEVRCISKVSTPGESDCENSRSTRAHGRPTGLGRFLATDITNTGASRGF
LRKIEASCSLLHVVRLIAGIVHPGPCCQPIPGSVTPVF*
back to top

mRNA from alignment at Ecto-sp13_S_contig14062:1014..3829+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14062.3169.1 ID=mRNA_Ecto-sp13_S_contig14062.3169.1|Name=mRNA_Ecto-sp13_S_contig14062.3169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14062:1014..3829+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAAGCCGGAGCCTCGCGTCGCCAAGCCTCGGACGCGAACGGTTGTGGA
GCCTTTGGTCCCTCCGCAGCCACCTCCGGGGCCGCGACAATGGCCGGCGC
GGCCGGCGAATCGCGCGCTGGTGTACGTAGCAGCGGCACAGGCTTCCCGA
AGGGCTCGGGGATTCACCGGGTGGTCGTTCCCCAAGCTGCCCCCCGCTCT
CGTACCCCCCAGTCCGCCGTTGGCGATAGAGAAACCGCAAAAGGAGGGGC
TAGGCGTCGAAGAGGAAGCGCCGGGCTCCGAGGCAGGGGGTGAAATAGAG
GAGGGATCCGTGATTGCGGCGGCTGATAGAAGGAAGAAGGGGAGGAAGTG
TGTGGAGTCTGGTAAGCTGCACAGTTTCTTGGGCCTCGCGAAGGACAACC
CCCCTGGCGTACCGTCGCCGAATGAGCTGGGGTGGATGTCGCTGGGACGG
ATGCACACACCTCAAGGAAGGGCTGCCATCAAGCGGCAGGCGCTTGAGAG
GAAGCGGCGTGCGCTGGAGGAGATCGCCCAGCGCAAGCGCGAGGAGCTCG
AGAGGCGGAGACTTGAGCTGGAAGAGTTTGCCCAGCAGAGGCGAGACGAG
CTAGAGAAGCGGAGACTGGAGCTAGAGAGGGTAGCTTACCAGAAGCGGCA
AGAGATTCTTGACGCCCTTCGCATCAAGGTACTTTGCGTGTACTTGGTGG
TGTTCTGCAGAGCTTGGCATTGTGCGATGCTCATGTAAGAAATGGCTAGA
TTTTTGTATGTGCAGATGATCTTCGAAACCGCTTGCTACCGGCGGAGCAG
ATGATCTATATTGGCGTCCGTGTGCGGGTGTCCTAGTTTGCATGTCACAC
GCCTTTCGACAAATGCACGTGAGCGTCTTGCTGGGGTCGCTTGACGCCAA
AACCCTCGGGCATGTGAAAAGTATGTGTGTGTTCGTTCCATCACTTGTGG
CGCCAAGTTTCGCTTACTAACAAGGTCACAGGACCTTTCATATGTTGCAT
TCTGGTGTTGCCCCACCTTTCTCCAGTGGCGTTTGCCATTAATATCATCG
CGAATATAATCGCGAGGAGGGTGCAGTGATTCGTTTCTGTCGACTGTGAA
GTCGAAGCGAATGACATGTTTAGCTAGCGGGTTCCATTTCTACGCCTTAT
CGCTGTGTTGTCTACACCTGCTCACCATCTCCTGTGGCGTCCCTCCTTCG
CAGGAGGAGATCGCGGAGGCCAGACGTAAACGTCGCCTCAACGTCCTTTT
TCTGGGAATGACGAGGGTGGCTGAGTACGACTCACGGGGCGGGCTGACCA
AGGGCATGAAGCGATTCGATCTCGTAGAGAGAATGGTACGAGACGACGTG
AACGAAGCCAATATGAATCCTTTGAGGTGAGAGGGGATGTCATTTGCAGG
TATATATGACGAATTGGAAGGACGGTACTTTTCTGCATCTACAACGCTCA
TAGTTACGAATGCTTTTTATATTGGCTTCATGCTGTTTCTTTTGTCACAT
TCGTCACATTGGGTTTTTCTGGTGGCCCAGAGGAAGTTTGAAGGAAAAGG
TACACATAATTCACTCTCTTCATTTTTCTGTGGGTGTTTCTGCATGCGTC
AAGCAGATGGATCTCATGATGTTTTCGACGCCGCGCATAGACGTTGACCC
CCCCTAGCCATGGCGCTGAGCAATGTGGACGCTTTTCGACCACCGGCATC
GGCACAAAGAGTGGTATTGCCAGCTTGGGCCCGGGTACACATGTTGTCTC
GCCCCTGGATACCTGCGGCCTCTCAGGGTCTGGATCGCCATCCCGCTCTC
ATGCGTCATCGTCACTCCTTTGCCGAAGTGAACCCGTCCCCATCTCAGCC
ACGCCAGTCGGGGCAACGCTGCTGGCTTCGGTCAATGCTGTAGTTTTCTT
TGGGACGTCGTCCAAGACGGAAAAGTGCCGTGATTGGCTCTGCGAGTGTT
CCTCTGCTGCGTTACTCCTGGCGGCCCTTCTACTAGAGGAAATGAGGCAA
CTGCCTCATATTCTTTTACGCACGTGTACCTGTTGCCCCTCTCCAGCATG
TTGGCTTACGTACGTGTAACCACTTTTTTCGTACACCTCGACAGGGACAC
GGCGAGGGTGCTTGCGATGGAAGCACTAGGGCACGAAGTCCGCTGCATCA
GCAAGGTCTCCACTCCGGGAGAGTCCGACTGCGAAAACTCTAGAAGGTTT
GCGGAAGAAGCCACGATTCCGGTGTTATCCATATTTCTGATGCCCAAATC
CAACCCGTTGATGGTCCTCTTTTGTTGAGCCTTTACCTTCGGCGAAGAAC
CTCATGGGGGGCGCAAGTACGGTTGAGCGCATCTTGTGTAGACAATAGCC
TGCGACCTTTCCTTAGGCGACGAGCCTAGTCACTCCCTGCGACTTTCATA
TTTTTGTTCATTCCAAGTGACAAAGTTGCCTCAAGCAGCCCCTCGTTTCA
TTTTTACTGATCCGTGTTGACCGTTGCCGTCCTTTCTAACCAGTTTTACT
CGTAATATTCTGCTCGTTCAAAACACCTGCTCGACTCTTCGTATCAGTAC
GAGGGCTCACGGCCGTCCCACTGGACTGGGGCGCTTCCTGGCCACCGACA
TCACCAACACGGGCGCATCCAGAGGCTTCTTGCGGAAAATCGAGGCAAGC
TGTAGTCTTCTGCATGTCGTACGACTTATCGCCGGGATCGTCCACCCCGG
GCCCTGCTGCCAACCAATACCGGGAAGCGTTACCCCGGTTTTCTAGAATG
AACACGATTCAGGCGCACTGCCCTGAAAAGAAGTGTTGTGATGCGCGAAA
TTGAAAATCGGAGGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14062:1014..3829+

>mRNA_Ecto-sp13_S_contig14062.3169.1 ID=mRNA_Ecto-sp13_S_contig14062.3169.1|Name=mRNA_Ecto-sp13_S_contig14062.3169.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=717bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14062:1014..3829+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCTGGGACGGATGCACACACCTCAAGGAAGGGCTGCCATCAAGCG
GCAGGCGCTTGAGAGGAAGCGGCGTGCGCTGGAGGAGATCGCCCAGCGCA
AGCGCGAGGAGCTCGAGAGGCGGAGACTTGAGCTGGAAGAGTTTGCCCAG
CAGAGGCGAGACGAGCTAGAGAAGCGGAGACTGGAGCTAGAGAGGGTAGC
TTACCAGAAGCGGCAAGAGATTCTTGACGCCCTTCGCATCAAGGAGGAGA
TCGCGGAGGCCAGACGTAAACGTCGCCTCAACGTCCTTTTTCTGGGAATG
ACGAGGGTGGCTGAGTACGACTCACGGGGCGGGCTGACCAAGGGCATGAA
GCGATTCGATCTCGTAGAGAGAATGGTACGAGACGACGTGAACGAAGCCA
ATATGAATCCTTTGAGGGACACGGCGAGGGTGCTTGCGATGGAAGCACTA
GGGCACGAAGTCCGCTGCATCAGCAAGGTCTCCACTCCGGGAGAGTCCGA
CTGCGAAAACTCTAGAAGTACGAGGGCTCACGGCCGTCCCACTGGACTGG
GGCGCTTCCTGGCCACCGACATCACCAACACGGGCGCATCCAGAGGCTTC
TTGCGGAAAATCGAGGCAAGCTGTAGTCTTCTGCATGTCGTACGACTTAT
CGCCGGGATCGTCCACCCCGGGCCCTGCTGCCAACCAATACCGGGAAGCG
TTACCCCGGTTTTCTAG
back to top