mRNA_Ecto-sp13_S_contig1032.317.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1032.317.1
Unique NamemRNA_Ecto-sp13_S_contig1032.317.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1032.317.1 vs. uniprot
Match: D7FVZ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVZ2_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 7.900e-102
Identity = 170/189 (89.95%), Postives = 175/189 (92.59%), Query Frame = 1 
Query:    1 MMHPAPVLMVVLAATRFSGAICFTMVTPRSSPSRHVRHV-SSVTTNRLAASSPPLSSSYSTTHTDGSMFAPMEARAVPSLARWQSRLGASGETLGEEGIANPPEESEVTSSGGATTSEPGAGGSGVDLSKGIAFEAPKPKALEPENAEDESESKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM 564
            MMHPAPV M VLAATRFSG+ICFTMVTPRSS SRHVRH+ SS TT RLAA+SPP SSSYSTTHTD SMFAPMEARAVPSL RWQSRLGASGETLGEEGIANP EESE TSSGGAT SEPG GGSGVDLSKGIAFEAPKPKALEPE AE+ES+SKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM
Sbjct:    1 MMHPAPVFMAVLAATRFSGSICFTMVTPRSSSSRHVRHMASSATTERLAATSPPSSSSYSTTHTDSSMFAPMEARAVPSLDRWQSRLGASGETLGEEGIANPSEESEATSSGGATNSEPGGGGSGVDLSKGIAFEAPKPKALEPEKAEEESDSKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1032.317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FVZ2_ECTSI7.900e-10289.95Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1032contigEcto-sp13_S_contig1032:3107..7279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1765
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002700.1
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462522.8917687-UTR-Ecto-sp13_S_contig1032:3106..43041681462522.8917687-UTR-Ecto-sp13_S_contig1032:3106..4304Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1032 3107..4304 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462522.904907-CDS-Ecto-sp13_S_contig1032:4304..44091681462522.904907-CDS-Ecto-sp13_S_contig1032:4304..4409Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1032 4305..4409 -
1681462522.9216697-CDS-Ecto-sp13_S_contig1032:6817..72791681462522.9216697-CDS-Ecto-sp13_S_contig1032:6817..7279Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1032 6818..7279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1032.317.1prot_Ecto-sp13_S_contig1032.317.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1032 4305..7279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1032.317.1

>prot_Ecto-sp13_S_contig1032.317.1 ID=prot_Ecto-sp13_S_contig1032.317.1|Name=mRNA_Ecto-sp13_S_contig1032.317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=189bp
MMHPAPVLMVVLAATRFSGAICFTMVTPRSSPSRHVRHVSSVTTNRLAAS
SPPLSSSYSTTHTDGSMFAPMEARAVPSLARWQSRLGASGETLGEEGIAN
PPEESEVTSSGGATTSEPGAGGSGVDLSKGIAFEAPKPKALEPENAEDES
ESKKVRVIIYTVLSLVPFVLLLPFLGGRELMPLDPSQM*
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mRNA from alignment at Ecto-sp13_S_contig1032:3107..7279-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1032.317.1 ID=mRNA_Ecto-sp13_S_contig1032.317.1|Name=mRNA_Ecto-sp13_S_contig1032.317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1032:3107..7279- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCACCCTGCGCCTGTGTTAATGGTGGTCCTCGCGGCCACCCGCTT
CTCGGGAGCCATCTGCTTCACAATGGTGACGCCCCGTTCTTCTCCGTCGC
GTCATGTTCGTCATGTTTCCTCAGTGACGACCAACAGGTTAGCTGCCTCC
TCACCACCTTTATCATCATCGTACTCGACAACGCACACCGACGGCAGCAT
GTTCGCGCCGATGGAAGCACGAGCGGTGCCGTCACTCGCCCGGTGGCAAT
CGCGACTCGGAGCATCGGGAGAGACGTTGGGAGAAGAGGGCATCGCGAAC
CCTCCTGAGGAATCAGAAGTGACCAGCAGCGGCGGCGCAACTACCAGCGA
GCCAGGCGCCGGCGGAAGCGGGGTCGACTTGTCGAAGGGGATAGCGTTCG
AGGCCCCGAAGCCAAAGGCGTTGGAACCAGAGAACGCCGAGGATGAGTCT
GAGTCGAAAAAGGTAGGTCTGTGGTCTTTGGATAGCGGCGTCGGCATCGG
CGGCGGCGGCGGCGGCGGCGGTGGGTCGCTCGCCGCCGCTGCCGCCCTGT
GCGGTAATGATGACAGTCCCGCGTTCCTGACTTGCCCATGGTGCAGCAGG
GATGATGTCCCATATGCGTCGATTGCCTGGCATGGTGGGGGTGCCGGGGG
CTCGACGCCGCGATCGGCAGGCTCGAGGCTGTCGTCAAGTGGCGTCTCGA
GGCAAGCCAATCGTGATTCTTCTGTGGCACGGAGAGAAAGATAAAGATGT
ACCCGCTGCCGTTTGTTTCATGTCCCCAAGCTCCACTCGCCCGCTGTTGT
TGATCCCTGCTGGTCCTGACTGGACAGAAACTTTGATCCTTGCTCCTGAC
TCGACAGCCAGAAGTAGTAAATACCATGATATTCTCTCGAAAGCTAGAAA
TGTGGGATGTTCGACCTCCTAGCGGTTTGTGCGTTCCTACCAAAGCGGCA
AACACGATACATTCGTTCCTACCATCTGGAACAGATTGTACCCAGAGCGA
TTGTTACATCGCCAGGTATATTTACGGTCTGTTGGTGACTCTTTAGGTCT
GATCGGTGGTGAAGGCTAGGACACACCGTGGCCGACCCAACCCAACTCAA
CCCTAACCCAAACCGTAACCGTAACCGTAACCCTCACCCACGGCCAACGC
ACGGCCTAGCGGCCGCGAACTGGGCGAGAACACGGCGCAGCCACGTTCTC
GGAATGCGTAACGGTGAGGGAGCGCTGGAGAGGGTCATCGGAACCAACGC
CTGGCCAATCAGACGGCGTGAAACAGCTTAGATAGGAAGAGTCACTTACA
GCGTGTAACAACTGCTGCTACAACACACATATACGCATGCTTTATTTTGT
TGTACTTGTAGTTGCCGTTGGCCAATTACCGAAGATGAATTGCGGTTCGG
ATCCTCGGCTAAATACTGCGCACCGCCCCCCCAGTTTCTGGAATTCAAGA
ACAACTTGAGATTTCCTCACGGAATATCTTTGGAAACCGGGCCAGCCGTT
ATCCTAGAATCTCGGTTGGTTTGATCCAAGTTTCCGGTGTCGCAGGGCAC
GGGTGCGGGCGAACCCTTCGCAAAGCAAAAATTGAATGTTCGACATTCGA
CGTACAACCGCCGTGAGGGTAGGTCTTCACGAAGAAATCAGATCTCGAAA
TCACACTTCGATATAAGACTAAAAGAGTCGGATCTACCCAAATCGGGACA
GAAAGGGCCTGTGTGTCTTAACGGGAGATCTGCCACATGGAAATGAATCT
CTGCAGTCCACCGCGAACAGCTCGAGAGGTCCGCCGCTTGCCGACTGCCA
GATTGCTGTTGTGACGTACTCTTATGGTGTGGCCACACCACATGAGGAGC
TATCGCTCCCGAGACGCACACACCAAACGCGTCCATGGCCTGTGTGCGGT
ACAAATACGATGTCTATGCATGTGCGACTTTGAATCGAGCCTCGTCCAAC
AGAAAGCCACCGATTCGTCTGAGCATTTGAGGTTCGACAACCCACGGGAG
ATTGCCCCACAGACCAACTCATCCCACGCACGTTTTTTTTCGGCGCCAGT
CACGTGCAACAACGATGCGCAGTCACCCTCCCTTTGGGTTGGCTTTTTGT
GCACTCTCTCCTCCGTGCTCGGCGGTGGAAGGAGTTCGTGTGGATGGGGG
TAGGTGGGCACGCGCCGTGCCGTCGACTGGACCGCTAGTGTTCGAAGTTG
GTTTCGTTTCACCCACATCGGGATCCGATTAAATCATTTTACCTTTATTT
TGATTCCCGATTTGGTGTTGGGCGATCCGATGATAAGTCCCAAAGATTCC
ACGGGTTCAAGAACTTTTATCCAATCAACAAGAGAGTTCTTTGGATCTTG
TGGTCTTATAACCAAATCGTGAAGTGCAATCGGGAACCGATTCCTTCGTT
AAGACCGACTTTAAGCAGCACCCGGACGTGTGCACCCTGTGGAGCTAAGC
TCGTCGGTTCGACATTCAACATCGAACTGCGGTCGCCATCACGCATTCAT
GCAGCGTACCAGTTAGTGGAGACGGGCGCCCTACCGCATCGCCTAACAAG
GACCACACGCGGCAGTTTCTAAACGCATCGCACAATCCTCTTCAAGAAAT
CCCTGCACCGCTGTCGCTTGAAGCGAAACAGCTCTTTCCCCCCTTGGCTT
CGCATGCGTTGAATCGTATTCGTTCTGCAGCCCCTCCGCCTCCTTCCTCA
TCGTTTGCTACGCCTGCTGTCTGCTGTTCGAAACAGCTCTTTCCCCCCTT
CGCTTCGCATGCGTTGAATCGTCGTCGTTCTGCAGCCCCGCCTCCTCCTT
CCTCATCGTTTGCTACGCCTGCTGTCTGCTGTTCGCTTGTTTTCGTACGC
GTCTTTTTGCTTGCCCGCAGGTTCGCGTGATCATCTACACGGTGCTATCC
CTCGTACCGTTCGTGCTGCTTCTGCCCTTCTTGGGGGGCAGGGAGCTCAT
GCCCTTAGATCCCAGCCAGATGTAGCATGGTGGAAGTGCCCCTCCCCCCC
CCGGCCCGCCTCCCTCGGTACCCACGTACTACAACGGCCTAGCTGTGCTT
GGTGATAGATTGGAGGCAGGTTGTTCGAGTTTGATCGTGGCGGTGATGGA
AGTCTGGTCGTGAACAGCTGTTGGTGTGTTTTGCTGTGTGAAGGGGAAGA
TTTTATTGCTCTAGTAGAGCATGGTCAACGGGTGGTTGATTGCCGACTGC
TTGGCTTTGCAAAGAATATATATACTATAGCTACACACGCCGCGCAGTTG
GTGATGCTGCTGTTATTTTGATGGGATTGAGAAGCACCCTCTACAAGCCG
CCATGTCCACCGCCGGGCCTTACCCGACATCACGTGTGCGCCGTGGATTG
CTGAATAAAGTGAATCCTCTATCTGCAGCCAGAATTATTATTTTTGGACA
CAATTTGTTCAGCATGTGCAGCAATCAAGGTCGTTTTTGCTGCCATCTTA
AAGAGGTGCGGATGGAACGGTAAGGGTGGTTTGGTTGAGGAACACAGCAA
GTAGCGACGGTAGGTGCAGCATGCAAGCGTGACCCGGCATGCAATCTTGT
GTGGCAGCGCTTTTCGCAACAGCCTCGCCGTGGATGCAGTGAAAGGCGGC
TAGGTAGGTCTGCGGGCGAGAAGGCGTTGAAACGAAGCGGGGTCGTGGTT
GTTGCCGATTTTTTCCGCGTGCAGTTGTTGACCAAATGTTTTGCGGGGCC
ACGCGCAACAACCGAGAACATTCGGTGTTATTCCAAGGGCGAGAGAGAGC
CGTCAAGTAGACAGGTGTTGAAAAACTGGCAAGAAGCTTGAGCAAAAACA
TGAAGTAGAAAATTGCTTGTTCTCACGGCACGGCCAGAGAGCGTCAACAC
AGATTCCGGTTGACGACCAGCACCAGCAACTCAACATGTGCAACGTATCT
CCCCAGGTGAAAGCGCTCATGACCTCGTCGGAGCCCGTCGCGGAGCTCCG
GCTGCAGCCGCGGAAATGCCGTGTACGGTATGTGGGTGCTGCTGTTATCG
ATCGTCCCTGTTGCTTTCATAATGCGGACCAATTTGGGTGTATGTAGTGA
ATTACTCCCATCCTCCGAAGCATGTGAGCGCTTGAATTTGGAGTCCTCAT
GAGCTTGCTTGCTGCGCTGGCTTCCGGTTTGGCAGAACGGGGCGCACGAT
TGCCACCCACACAGAAGCCACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1032:3107..7279-

>mRNA_Ecto-sp13_S_contig1032.317.1 ID=mRNA_Ecto-sp13_S_contig1032.317.1|Name=mRNA_Ecto-sp13_S_contig1032.317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=567bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1032:3107..7279- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGCACCCTGCGCCTGTGTTAATGGTGGTCCTCGCGGCCACCCGCTT
CTCGGGAGCCATCTGCTTCACAATGGTGACGCCCCGTTCTTCTCCGTCGC
GTCATGTTCGTCATGTTTCCTCAGTGACGACCAACAGGTTAGCTGCCTCC
TCACCACCTTTATCATCATCGTACTCGACAACGCACACCGACGGCAGCAT
GTTCGCGCCGATGGAAGCACGAGCGGTGCCGTCACTCGCCCGGTGGCAAT
CGCGACTCGGAGCATCGGGAGAGACGTTGGGAGAAGAGGGCATCGCGAAC
CCTCCTGAGGAATCAGAAGTGACCAGCAGCGGCGGCGCAACTACCAGCGA
GCCAGGCGCCGGCGGAAGCGGGGTCGACTTGTCGAAGGGGATAGCGTTCG
AGGCCCCGAAGCCAAAGGCGTTGGAACCAGAGAACGCCGAGGATGAGTCT
GAGTCGAAAAAGGTTCGCGTGATCATCTACACGGTGCTATCCCTCGTACC
GTTCGTGCTGCTTCTGCCCTTCTTGGGGGGCAGGGAGCTCATGCCCTTAG
ATCCCAGCCAGATGTAG
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