mRNA_Ecto-sp13_S_contig1406.3165.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A6H5JL03_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JL03_9PHAE) HSP 1 Score: 184 bits (468), Expect = 4.100e-49 Identity = 100/112 (89.29%), Postives = 103/112 (91.96%), Query Frame = 1
Query: 97 GEKTIQKSFFFFSIRDRKKEMEDKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNVRSADKFCMDIMCILLLLGMIAVLYAVVKET 432
G+ T ++ IRDRKKEMEDKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVN RMKEVLKNVRSADKFCMDIMCILLLLGMIAVLYAVVKET
Sbjct: 182 GKLTPEQHVRIQQIRDRKKEMEDKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNKRMKEVLKNVRSADKFCMDIMCILLLLGMIAVLYAVVKET 293
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A835YY22_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY22_9STRA) HSP 1 Score: 131 bits (330), Expect = 2.840e-30 Identity = 64/98 (65.31%), Postives = 86/98 (87.76%), Query Frame = 1
Query: 136 IRDRKKEMEDKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNVRSADKFCMDIMCILLLLGMIAVLYAVVKE 429
IR+R KEME+ YL+ +EEHVDRLG++A+ + EEL +Q+RM+DDLGNRI++ QE +ANVN+RMK+ LK VR+ADKFC+DIMC+LL+LG+ AVLYAV+K
Sbjct: 197 IRERSKEMENTYLSKIEEHVDRLGDLARGMGEELVLQERMLDDLGNRIESTQEKLANVNVRMKDTLKKVRAADKFCVDIMCVLLMLGLAAVLYAVIKN 294
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A7S2UZ99_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ99_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.690e-18 Identity = 44/96 (45.83%), Postives = 70/96 (72.92%), Query Frame = 1
Query: 145 RKKEMEDKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNVRSADKFCMDIMCILLLLGMIAVLYAVVKET 432
R K+M+D++LT + E VD + E+A EE+++Q M+D+LGNRID A H +VN ++KE LK VR ADK CMDI+CI++++ M+ ++Y++ K +
Sbjct: 21 RDKQMDDEHLTKIGEAVDDIKEIALAANEEVKLQSVMIDNLGNRIDIANTHAESVNTKLKETLKKVRGADKLCMDIICIVIMVAMVGIIYSLYKNS 116
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A7S2RAR9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAR9_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 6.820e-15 Identity = 40/89 (44.94%), Postives = 65/89 (73.03%), Query Frame = 1
Query: 163 DKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNVRSADKFCMDIMCILLLLGMIAVLYAVVKE 429
DK + ++ E V+ LG +AK + EELQ+Q +M+D+L ++ AQEHV+N+N ++ + LK VR +DK C+DI+C+LLLLG+I V+ + +
Sbjct: 224 DKTIELIGERVEDLGGIAKQMNEELQVQSKMIDELDQAVEKAQEHVSNINAQVADTLKKVRDSDKLCIDILCLLLLLGLIGVMIQLARS 312
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A7S3XQY8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQY8_HETAK) HSP 1 Score: 78.6 bits (192), Expect = 1.240e-13 Identity = 38/98 (38.78%), Postives = 67/98 (68.37%), Query Frame = 1
Query: 136 IRDRKKEMEDKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNVRSADKFCMDIMCILLLLGMIAVLYAVVKE 429
++ R +E + ++LT +E+ V+ E+A EE++ Q ++D L ++++ EH N R+K+V+K VR ADKFCMDI C++L+LGM+ +LY++ +E
Sbjct: 28 LQQRDREQDAEHLTRIEQGVEDALEIALVANEEVKRQGVLLDQLDDKLEAVTEHADTTNRRLKDVIKQVRGADKFCMDIFCVVLMLGMLGILYSLARE 125
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A7S2Q5H6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q5H6_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 1.160e-11 Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1
Query: 136 IRDRKKEMEDKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNV-RSADKFCMDIMCILLLLGMIAVLY 414
IRDR E D+ L + E + L E+A EE++ Q++M+ ++G++ID A EH+ NVN +MK+ L V RS+DK C+DIMCI+L +G+IAV+Y
Sbjct: 48 IRDRDAEF-DQDLDEIGEGIQDLHELALRQGEEVKRQNQMLQEVGSKIDNAHEHMINVNAKMKDTLNEVGRSSDKLCVDIMCIVLGIGLIAVIY 140
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A7S3PYZ1_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PYZ1_9STRA) HSP 1 Score: 75.9 bits (185), Expect = 4.820e-11 Identity = 45/110 (40.91%), Postives = 66/110 (60.00%), Query Frame = 1
Query: 100 EKTIQKSFFFFSIRDRKKEMEDKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNVRSADKFCMDIMCILLLLGMIAVLYAVVKE 429
E T Q+ I DR KE D+ L + E + L E+A Q+ M ++G +ID AQEH++ VN +MK+ L VR+ADK C+D+MCI+L++GM AVLY ++
Sbjct: 226 ELTQQQHLQLQQINDRDKEF-DQELDQIGEGIQDLSELAXXXXXXXXRQNVMXXNVGQKIDDAQEHLSTVNTKMKDTLNEVRAADKICVDVMCIVLMVGMAAVLYKMIAS 334
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: K3WTN0_GLOUD (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTN0_GLOUD) HSP 1 Score: 74.7 bits (182), Expect = 8.670e-11 Identity = 40/75 (53.33%), Postives = 56/75 (74.67%), Query Frame = 1
Query: 193 VDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNV-RSADKFCMDIMCILLLLGMIAVLY 414
V LG++A+ + EELQ Q M+D L RIDT Q HV +VNM+MK+ L+ V RSADK MD++C++LLLG++ V+Y
Sbjct: 228 VQELGQLARGLNEELQQQSIMIDGLEERIDTTQAHVESVNMKMKKTLEKVGRSADKCMMDMICLILLLGILTVVY 302
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A7S0BZ32_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BZ32_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 1.370e-10 Identity = 41/91 (45.05%), Postives = 59/91 (64.84%), Query Frame = 1
Query: 163 DKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNV-RSADKFCMDIMCILLLLGMIAVLYAVVKET 432
D+ L ++ + + L E+A EE++ Q+ M++ +G +ID +H+ NVN RMKE L V RSADK C+DIMCI L LG AV Y ++K T
Sbjct: 209 DQDLDIIGQGIQDLSEIAALQGEEVKRQNVMLESVGKKIDNVNDHLGNVNSRMKETLDEVGRSADKLCVDIMCIALALGFAAVFYRIIKAT 299
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Match: A0A7S2XIT6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XIT6_9STRA) HSP 1 Score: 73.6 bits (179), Expect = 2.140e-10 Identity = 39/88 (44.32%), Postives = 63/88 (71.59%), Query Frame = 1
Query: 163 DKYLTVVEEHVDRLGEMAKNIQEELQIQDRMVDDLGNRIDTAQEHVANVNMRMKEVLKNV-RSADKFCMDIMCILLLLGMIAVLYAVV 423
D L + E + L E+A+ EE++ Q++M+DD+G ++D+ EHV NVN+++K+ LK V RS+DK C+DIMCI+L+LG VL+ ++
Sbjct: 224 DTQLDDIGEGIQDLAEIAELQSEEVKRQNQMLDDMGIKMDSVHEHVQNVNLKLKDTLKEVGRSSDKLCVDIMCIVLMLGFAGVLFKML 311 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1406.3165.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1406.3165.1 >prot_Ecto-sp13_S_contig1406.3165.1 ID=prot_Ecto-sp13_S_contig1406.3165.1|Name=mRNA_Ecto-sp13_S_contig1406.3165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp GGGGGGGGGDPRPQKGGGGKVPPGGXXXXAHRGEKTIQKSFFFFSIRDRKback to top mRNA from alignment at Ecto-sp13_S_contig1406:1293..4829+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1406.3165.1 ID=mRNA_Ecto-sp13_S_contig1406.3165.1|Name=mRNA_Ecto-sp13_S_contig1406.3165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3537bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1406:1293..4829+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1406:1293..4829+ >mRNA_Ecto-sp13_S_contig1406.3165.1 ID=mRNA_Ecto-sp13_S_contig1406.3165.1|Name=mRNA_Ecto-sp13_S_contig1406.3165.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1406:1293..4829+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |