mRNA_Ecto-sp13_S_contig14057.3164.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14057.3164.1
Unique NamemRNA_Ecto-sp13_S_contig14057.3164.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14057.3164.1 vs. uniprot
Match: D7G2B2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2B2_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.640e-36
Identity = 83/87 (95.40%), Postives = 86/87 (98.85%), Query Frame = 3 
Query:  141 EGGGCAYSNCADGPSCPGGSCSFQSCRGXXXXXXXXXXXXXXXXXXXXXXXRVVDPLTTLRDGYCDGGACKVNGKPFPSRFAGKLSV 401
            +GGGC YSNCADGPSCPGGSCSFQ+CRGXXXXXXXXXXXXXXXXXXXXXXXRVVDPL+TLRDGYCDGGACKVNGKPFPSRFAGKLSV
Sbjct:    5 QGGGCGYSNCADGPSCPGGSCSFQNCRGXXXXXXXXXXXXXXXXXXXXXXXRVVDPLSTLRDGYCDGGACKVNGKPFPSRFAGKLSV 91
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BLAST of mRNA_Ecto-sp13_S_contig14057.3164.1 vs. uniprot
Match: A0A6U4L0H7_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L0H7_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 3.310e-15
Identity = 61/121 (50.41%), Postives = 79/121 (65.29%), Query Frame = 3 
Query:   36 KAYASLLVVSVAHVSQILVGAAAATGRPVPCDFVCEGGGCAYSNCADGPSCPGGSCSFQSCRGXXXXXXXXXXXXXXXXXXXXXXXRVVDPLTTLRDGYCDGGACKVNGKPFPSRFAGKLS 398
            +  ++LLV   A +  ++  A     + + CD  C  G C Y NC +GP+CPGG C+F +C    XXXXXXXXXXXXXXXXXXXXX++ +P T L+DGYC G  C VNGK +P RF+  LS
Sbjct:   76 RVLSALLVWGAALLLGLIAPAQGGKLKEMDCDKPCTMGSCNYENCVNGPACPGGLCTFTNCVDPSXXXXXXXXXXXXXXXXXXXXXKIENPQTVLKDGYCRGTKCTVNGKAWPHRFSDTLS 196
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BLAST of mRNA_Ecto-sp13_S_contig14057.3164.1 vs. uniprot
Match: A0A6G0XPZ3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XPZ3_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 6.140e-6
Identity = 50/95 (52.63%), Postives = 58/95 (61.05%), Query Frame = 3 
Query:  117 PVPCDFV-CEGGGCAYSNCADGPSCPGGSCSFQSCRGXXXXXXXXXXXXXXXXXXXXXXXRVVDPLTTLRDGYCDGGACKVNGKPFPSRFAGKLS 398
            P  C  + C+ GGC Y  C +   C GG C F  C    XXXXXXXXXXXXXXXXXXXXX    P  +L++ YC GG C V+GK  PS F+  LS
Sbjct:   33 PTNCSVLDCKHGGCLYRGCKERIECSGGHCEFIDCVDPHXXXXXXXXXXXXXXXXXXXXXXXXKPTRSLKEDYCLGGLCTVDGKEHPSSFSTSLS 127
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14057.3164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2B2_ECTSI2.640e-3695.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6U4L0H7_9STRA3.310e-1550.41Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6G0XPZ3_9STRA6.140e-652.63Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14057contigEcto-sp13_S_contig14057:1081..2365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score127.5
Seed ortholog evalue4.6e-27
Seed eggNOG ortholog2880.D7G2B2
Model size421
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2E3VX@1,2SAVN@2759
Cds size393
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.783839-UTR-Ecto-sp13_S_contig14057:1080..10971681462750.783839-UTR-Ecto-sp13_S_contig14057:1080..1097Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14057 1081..1097 -
1681462750.8417006-UTR-Ecto-sp13_S_contig14057:2354..23651681462750.8417006-UTR-Ecto-sp13_S_contig14057:2354..2365Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14057 2355..2365 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.8006945-CDS-Ecto-sp13_S_contig14057:1097..12641681462750.8006945-CDS-Ecto-sp13_S_contig14057:1097..1264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14057 1098..1264 -
1681462750.8109062-CDS-Ecto-sp13_S_contig14057:1646..17401681462750.8109062-CDS-Ecto-sp13_S_contig14057:1646..1740Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14057 1647..1740 -
1681462750.8207424-CDS-Ecto-sp13_S_contig14057:2222..23541681462750.8207424-CDS-Ecto-sp13_S_contig14057:2222..2354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14057 2223..2354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14057.3164.1prot_Ecto-sp13_S_contig14057.3164.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14057 1098..2354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14057.3164.1

>prot_Ecto-sp13_S_contig14057.3164.1 ID=prot_Ecto-sp13_S_contig14057.3164.1|Name=mRNA_Ecto-sp13_S_contig14057.3164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=131bp
MEIAWPRWKAYASLLVVSVAHVSQILVGAAAATGRPVPCDFVCEGGGCAY
SNCADGPSCPGGSCSFQSCRGPSCKGGNCDFISCHSPACGGGGCRVVDPL
TTLRDGYCDGGACKVNGKPFPSRFAGKLSV*
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mRNA from alignment at Ecto-sp13_S_contig14057:1081..2365-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14057.3164.1 ID=mRNA_Ecto-sp13_S_contig14057.3164.1|Name=mRNA_Ecto-sp13_S_contig14057.3164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14057:1081..2365- (Ectocarpus species13 EcNAP12_S_4_19m)
CATACTGCAGCATGGAGATTGCATGGCCACGATGGAAGGCATACGCTTCT
TTGCTAGTGGTATCGGTTGCTCACGTATCTCAAATTCTTGTGGGTGCAGC
AGCGGCCACCGGGCGGCCGGTACCATGCGATTTCGTCTGTGAGGTGGGTG
CATCTCAACCGACCGGGTTGGTTATGGACTAGGCTCGAAGGATAAGGAAC
ATAACAACGAATGCTCACACTGATGCGGGTACTGACTGGCACCAGGGTAC
ACGGAAGACTGCTGTGAGTGATGGAGTGTGTCGCCATCTAAGGGATGGAA
AGGAAATAACGAGGAGACCAATAGCGTACGATCAGTTGTCTACTGTAACT
TCACTATCGCCACATACAGTATTGCGCTCTTATCAAGTAGGGGACAACAG
CTTTTCGAATGCTGTAGACCAGAACCGCTCTCCAGAGGTACTATGTGGGC
TGCAGACGGCAGACGAGATGTAGACTAGTGTACACTGCAGATCAAACAGG
GGGCGTGAAACTCTTTCTACACGTTTCAGCCGACACGGTGAATCTCGAAT
CCTCGCTATGCTATGTGGCATGTTCACCTTTCCGTCCTCACATGCTCGCT
CGTGGTGGCGGTGTCATTCCCGCAGGGAGGTGGGTGCGCCTACTCGAACT
GCGCGGATGGACCATCGTGCCCTGGGGGCTCTTGTTCATTTCAGAGTTGT
CGAGGTCCCTCGTGCAAGGGTAAGAGGAGTGCGCATAGGAAAAACTACGG
TGGTATGTCCAAGCGTCTTCATTGACCAGCGGTTTGTTCGGGCGGAATGG
CGCGTTTCGCACCCCCCACATGTGTCCCCAAGCAGACACCAAGCAACCCA
TTTTACCATAGATATTTGGAGCAGACATCAGCACTCCATCCCTCACGGGG
GGTTGACTTTCTGTCGGTCCGTAACATACATGAGGACCCCAACATGCCCA
AGGTCACTTCAACACTGCTGTCGCGCGTGCCGCCACCGCGACGGTCGTTG
TGTTTGCTGCGGTATTTTGTCGACAGCACTTCCTTTTTGTTATTGCCGAG
ATTTGCACTCTCCCAAGAACAACTGCTGGACGATGTTCCCGTAACACGCA
GGTGGAAACTGCGACTTCATCTCCTGCCACAGCCCGGCGTGTGGTGGAGG
CGGCTGCCGTGTCGTAGATCCTCTGACTACCCTCCGCGACGGCTACTGCG
ACGGGGGCGCATGCAAGGTCAACGGGAAGCCGTTCCCTTCGCGCTTTGCC
GGGAAGCTCAGTGTCTGAGAACCAAACGAAAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14057:1081..2365-

>mRNA_Ecto-sp13_S_contig14057.3164.1 ID=mRNA_Ecto-sp13_S_contig14057.3164.1|Name=mRNA_Ecto-sp13_S_contig14057.3164.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=393bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14057:1081..2365- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGATTGCATGGCCACGATGGAAGGCATACGCTTCTTTGCTAGTGGT
ATCGGTTGCTCACGTATCTCAAATTCTTGTGGGTGCAGCAGCGGCCACCG
GGCGGCCGGTACCATGCGATTTCGTCTGTGAGGGAGGTGGGTGCGCCTAC
TCGAACTGCGCGGATGGACCATCGTGCCCTGGGGGCTCTTGTTCATTTCA
GAGTTGTCGAGGTCCCTCGTGCAAGGGTGGAAACTGCGACTTCATCTCCT
GCCACAGCCCGGCGTGTGGTGGAGGCGGCTGCCGTGTCGTAGATCCTCTG
ACTACCCTCCGCGACGGCTACTGCGACGGGGGCGCATGCAAGGTCAACGG
GAAGCCGTTCCCTTCGCGCTTTGCCGGGAAGCTCAGTGTCTGA
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