mRNA_Ecto-sp13_S_contig14050.3161.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14050.3161.1
Unique NamemRNA_Ecto-sp13_S_contig14050.3161.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14050.3161.1 vs. uniprot
Match: D8LHQ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ6_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.090e-47
Identity = 146/173 (84.39%), Postives = 150/173 (86.71%), Query Frame = 3 
Query:  117 MMASTIKATGKPEKAAPVGXXXXXXXXXXXXXXXXXXXXXXXXPAKTNKQSIKQRVRAEAAEKSRLLRKAKLAMQKKMQXXXXXXXXXXXXXXXXXXXXXXTLPSPPSF--GSGCVVAAPPRASPASPGNATGARHAQRREAVHHDVEMKLGQWRRKRAREEAGLPGDGERQY 629
            MMA T KA GKPEKAAP   XXXXXXXXXXXXXXXXXXXXXXXPAKTNKQSIKQRVRAEAAEKSRLLRKAKLAMQKKMQ  XXXXXXXXXXXX        TL +PPSF  GSG VV APPRASPASPGNA+GAR  +RREAVHHDVE+KLGQWRRKRAREEAGLPGDGERQY
Sbjct:    1 MMAGTKKAPGKPEKAAPGDGXXXXXXXXXXXXXXXXXXXXXXXPAKTNKQSIKQRVRAEAAEKSRLLRKAKLAMQKKMQREXXXXXXXXXXXXGAGGAI--TLSAPPSFEHGSGSVVPAPPRASPASPGNASGARRTERREAVHHDVEVKLGQWRRKRAREEAGLPGDGERQY 171
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BLAST of mRNA_Ecto-sp13_S_contig14050.3161.1 vs. uniprot
Match: A0A6H5JXD9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXD9_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.480e-42
Identity = 139/180 (77.22%), Postives = 147/180 (81.67%), Query Frame = 3 
Query:   90 ELSERDKERMMASTIKATGKPEKAAPVGXXXXXXXXXXXXXXXXXXXXXXXXPAKTNKQSIKQRVRAEAAEKSRLLRKAKLAMQKKMQXXXXXXXXXXXXXXXXXXXXXXTLPSPPSFGSGCVVAAPPRASPASPGNATGARHAQRREAVHHDVEMKLGQWRRKRAREEAGLPGDGERQY 629
            E  ER K RMMAST KA GK EKAAP  XXXXXXXXXXXXXXXXXXXXXXX PAKTNKQSIKQRVRAEAAEKSRLLRKAKLAMQK++Q     XXXXXXXXXXXX     + PS    GS  V  APPRA   SPGNA+GAR A+RREAVHHDVE+KLGQWR+KRAREEAGLPGDGE+QY
Sbjct:   47 EFLERGKGRMMASTKKAPGKTEKAAPGXXXXXXXXXXXXXXXXXXXXXXXXKPAKTNKQSIKQRVRAEAAEKSRLLRKAKLAMQKRIQRESTAXXXXXXXXXXXXGATALSAPSSFEDGSDYVGPAPPRA---SPGNASGARRAERREAVHHDVEVKLGQWRKKRAREEAGLPGDGEQQY 223
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14050.3161.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LHQ6_ECTSI1.090e-4784.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JXD9_9PHAE3.480e-4277.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14050contigEcto-sp13_S_contig14050:449..2471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score181.4
Seed ortholog evalue3.5e-43
Seed eggNOG ortholog2880.D8LHQ6
Model size631
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
Cds size513
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.4782295-UTR-Ecto-sp13_S_contig14050:448..5121681462750.4782295-UTR-Ecto-sp13_S_contig14050:448..512Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14050 449..512 +
1681462750.5557005-UTR-Ecto-sp13_S_contig14050:1335..13871681462750.5557005-UTR-Ecto-sp13_S_contig14050:1335..1387Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14050 1336..1387 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.626798-CDS-Ecto-sp13_S_contig14050:1387..15491681462750.626798-CDS-Ecto-sp13_S_contig14050:1387..1549Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14050 1388..1549 +
1681462750.6421335-CDS-Ecto-sp13_S_contig14050:2120..24711681462750.6421335-CDS-Ecto-sp13_S_contig14050:2120..2471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14050 2121..2471 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14050.3161.1prot_Ecto-sp13_S_contig14050.3161.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14050 1388..2471 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14050.3161.1

>prot_Ecto-sp13_S_contig14050.3161.1 ID=prot_Ecto-sp13_S_contig14050.3161.1|Name=mRNA_Ecto-sp13_S_contig14050.3161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=171bp
MMASTIKATGKPEKAAPVGGGGGEAAVVGFSPKKKKKQPNKKKPAKTNKQ
SIKQRVRAEAAEKSRLLRKAKLAMQKKMQRERTAAAAAAAAAEEEGAGGA
ATLPSPPSFGSGCVVAAPPRASPASPGNATGARHAQRREAVHHDVEMKLG
QWRRKRAREEAGLPGDGERQY
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mRNA from alignment at Ecto-sp13_S_contig14050:449..2471+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14050.3161.1 ID=mRNA_Ecto-sp13_S_contig14050.3161.1|Name=mRNA_Ecto-sp13_S_contig14050.3161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2023bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14050:449..2471+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATTTGAGCATCCGAGTCATCGATCGTTGCCGTCATAGGCGGTGTCTACCA
CTGACTCTTTTCAGGTATGCTTCCTGAGTTCATGATACAGGCACATTCGT
GCGCGGCTTAGCCGGTAGATCCCATCAGCAGTGAGCGGGATTTTGAGCGT
TTTTACACAACCAGCCGAGGAAATTCCTAATACAGCAGTCGCGTGGATAT
TCACATGTCAGATTGAGAACAAAGTGTTAAGCACTAAAATGTGCGCAGGG
TTGCACTGGGGGCAATAGTGTTCCGTACCCAAGGGCAATAGGGTTTCGAT
CCGTCCGTTGCCGATCAACATGAAGCCAAAATGTCATCTGCTTCGAGAGA
TCGGCGACAGACACCGGATCAAAGATTGATTATCCCGGAAGATGAAGCGT
TGCAGGAAAGTTGCGCCTCAGTCTTGTTCCAGAACGTGGAATATTTTTTC
CAGTCTTTCGAGATCTGCGCGCAACGTTATTTTCACCGCACACCCCCTCG
TGGGAGGTTGCCGGACGAAACGCCCTGTGAGCAGCATCCTGGCAACAACG
TCGAGAGTTGTGTTCTCCGTTCTTGCACCGCGTGGTGTACTAGTGCAGAG
GGCGGTCGGGTCCCCCTCAGCGAACACCTAGACCACGCCACAGAGCGGGA
CGTGCCGTTCGCCAGGTCGGTCCTGCCATCCTTGGTACGTAGGCGGCGGA
CCCTCGAGGGTAGCCGGCGGGCGCAAGAGCGGACTCAAGCTTATCCACAA
CCTCGCCTAACACCCACGCAACAGCAGTCCCCGGTTGCATTCTTTACCCA
ACATGTTTTCTTTATAGAAAAACCCGTGCGAAGGCTACTGCGACCCATAT
CACCGCGACACCACTGGCCACATGCGTTCGCCAGCAGGAGTTTCATCCCT
GGCGATTCCTAGGAATTATCAGAAAGAGACAAGGAGAGGATGATGGCTAG
TACAATAAAGGCAACGGGTAAGCCGGAAAAAGCCGCGCCCGTGGGCGGTG
GGGGTGGAGAGGCCGCCGTTGTGGGCTTTAGCCCGAAGAAGAAGAAGAAA
CAGCCGAACAAGAAGAAGCCGGCCAAGACCAACAAGCAGTCGATCAAGCA
GGTAGGTGATGGCGAAGCTGTTTTTGTTTCAATCTCGCGGCTGGTTGGGG
TCGAGGTGGAAGCGTGTGGGTGCGCGTCTCGGCAGCAACGGGAATGAAGC
GAAAAGCTGAGAACCAGCGTGTCCATGCAAATGCCGCGGGGGTGGAGGAA
GAGGTCGAAAAGCACGCGACGTAACAGTAAGCAGCGTACAATAGTAGTAG
ATCATAAGCCCGCTAAAGATCAATGGCACCAAATATGCACAGAAATGATT
TTGAGTTCTTGGTCTGTGATACTGGGTTGCAAAACCTAGCAGGCTTGGGG
GTGAGGGGGGGCGTGCCCGGGCAGGAAGTCATCGTGTGTCGACCGGTCAC
CTCTCCGTTACTCGACTTATACTCGTGTGGGTGGCGCCCGGGGGGGGGGG
GGTGCTCTTGCTCTAGCTGAGGACAGCTGTACCCGGTGAGTTCTGTAGTA
TCTTAAACACATGTCGTAAAATCTTGCTCCCACTCACGCCATCGTTATCC
CGGGTACGGGAAGGATCCCGCGCCGTATAATAAAATTTCGACCTTTTTGA
CACGCTTGTCGATCTCACGCAGCGCGTCCGCGCCGAGGCGGCGGAGAAAT
CCCGGCTGTTGCGCAAGGCGAAGCTGGCCATGCAGAAAAAGATGCAGCGC
GAACGGACGGCTGCTGCTGCTGCTGCTGCCGCCGCGGAAGAGGAGGGAGC
CGGTGGCGCAGCAACCCTTCCTTCCCCTCCCTCCTTCGGCTCTGGTTGTG
TCGTCGCCGCTCCCCCCCGAGCCAGCCCGGCAAGCCCCGGCAACGCCACC
GGGGCGCGCCATGCGCAGCGGCGCGAGGCCGTCCATCACGACGTGGAGAT
GAAGCTGGGGCAGTGGCGCAGGAAGCGAGCTCGCGAGGAGGCGGGTCTGC
CGGGAGACGGCGAACGGCAGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14050:449..2471+

>mRNA_Ecto-sp13_S_contig14050.3161.1 ID=mRNA_Ecto-sp13_S_contig14050.3161.1|Name=mRNA_Ecto-sp13_S_contig14050.3161.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14050:449..2471+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGGCTAGTACAATAAAGGCAACGGGTAAGCCGGAAAAAGCCGCGCC
CGTGGGCGGTGGGGGTGGAGAGGCCGCCGTTGTGGGCTTTAGCCCGAAGA
AGAAGAAGAAACAGCCGAACAAGAAGAAGCCGGCCAAGACCAACAAGCAG
TCGATCAAGCAGCGCGTCCGCGCCGAGGCGGCGGAGAAATCCCGGCTGTT
GCGCAAGGCGAAGCTGGCCATGCAGAAAAAGATGCAGCGCGAACGGACGG
CTGCTGCTGCTGCTGCTGCCGCCGCGGAAGAGGAGGGAGCCGGTGGCGCA
GCAACCCTTCCTTCCCCTCCCTCCTTCGGCTCTGGTTGTGTCGTCGCCGC
TCCCCCCCGAGCCAGCCCGGCAAGCCCCGGCAACGCCACCGGGGCGCGCC
ATGCGCAGCGGCGCGAGGCCGTCCATCACGACGTGGAGATGAAGCTGGGG
CAGTGGCGCAGGAAGCGAGCTCGCGAGGAGGCGGGTCTGCCGGGAGACGG
CGAACGGCAGTAC
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