mRNA_Ecto-sp13_S_contig10318.316.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10318.316.1
Unique NamemRNA_Ecto-sp13_S_contig10318.316.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10318.316.1 vs. uniprot
Match: A0A6H5KU59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KU59_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.730e-48
Identity = 87/96 (90.62%), Postives = 90/96 (93.75%), Query Frame = -3 
Query:    2 ADGATGKDEAETPPSLQADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRTNFDTAPFFACGDKESTTVSGPGGAGARGGAGMTGAPAELF 289
            ADGATGKDEA+TPPSLQAD+FDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDR NFDTAP  ACGDK STTVS PGGAGARGGAG+TGAP ELF
Sbjct:  587 ADGATGKDEAKTPPSLQADSFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRANFDTAPLLACGDKASTTVSRPGGAGARGGAGVTGAPTELF 682
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BLAST of mRNA_Ecto-sp13_S_contig10318.316.1 vs. uniprot
Match: D7G1W4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1W4_ECTSI)

HSP 1 Score: 169 bits (428), Expect = 1.440e-46
Identity = 87/94 (92.55%), Postives = 87/94 (92.55%), Query Frame = -3 
Query:    2 ATGKDEAETPPSLQADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRTNFDTAPFFACGD-KESTTVSGPGGAGARGGAGMTGAPAELF 280
            ATGKDEAETPP LQADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDR NFDTAPFFACGD K STTVS PGGAGARGGAGMTGAP  LF
Sbjct:  619 ATGKDEAETPPPLQADNFDTGRLTDTVGWEGSPKSRGGVGDGVSGKARVVDRANFDTAPFFACGDGKASTTVSRPGGAGARGGAGMTGAPTGLF 712
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10318.316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KU59_9PHAE1.730e-4890.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1W4_ECTSI1.440e-4692.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10318contigEcto-sp13_S_contig10318:5254..5639 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size386
Hectar predicted targeting categoryother localisation
Exons1
Cds size384
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462522.8477275-CDS-Ecto-sp13_S_contig10318:5253..56371681462522.8477275-CDS-Ecto-sp13_S_contig10318:5253..5637Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10318 5254..5637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10318.316.1prot_Ecto-sp13_S_contig10318.316.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10318 5254..5637 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10318.316.1

>prot_Ecto-sp13_S_contig10318.316.1 ID=prot_Ecto-sp13_S_contig10318.316.1|Name=mRNA_Ecto-sp13_S_contig10318.316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
RTAPRGRRSCQPRHEPQPRPVRTPSLTPCPRTRRRAPCRSLSGPRPWPYR
SRRRRLLRGSSASLPTRPYRSAGRCRSYPPATMVVSPPRLCRWHHQHRRC
RRRRRCLLLPSGAPWQRRLGCCCSAQAA
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mRNA from alignment at Ecto-sp13_S_contig10318:5254..5639+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10318.316.1 ID=mRNA_Ecto-sp13_S_contig10318.316.1|Name=mRNA_Ecto-sp13_S_contig10318.316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=386bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10318:5254..5639+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAACAGCTCCGCGGGGGCGCCGGTCATGCCAGCCCCGCCACGAGCCCCA
GCCCCGCCCGGTCCGGACACCGTCGTTGACTCCTTGTCCCCGCACGCGAA
GAAGGGCGCCGTGTCGAAGTTTGTCCGGTCCACGACCCTGGCCTTACCGC
TCACGCCGTCGCCGACTCCTCCGCGGCTCTTCGGCGAGCCTTCCCACCCG
ACCGTATCGGTCAGCCGGCCGGTGTCGAAGTTATCCGCCTGCAACGATGG
TGGTGTCTCCGCCTCGTCTTTGCCGGTGGCACCATCAGCACCGCCGCTGC
CGCCGCCGCCGCCGTTGTTTGCTCCTTCCGTCGGGGGCGCCGTGGCAGCG
TCGTCTCGGTTGCTGTTGTTCAGCGCAGGCGGCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10318:5254..5639+

>mRNA_Ecto-sp13_S_contig10318.316.1 ID=mRNA_Ecto-sp13_S_contig10318.316.1|Name=mRNA_Ecto-sp13_S_contig10318.316.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10318:5254..5639+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGAACAGCTCCGCGGGGGCGCCGGTCATGCCAGCCCCGCCACGAGCCCCA
GCCCCGCCCGGTCCGGACACCGTCGTTGACTCCTTGTCCCCGCACGCGAA
GAAGGGCGCCGTGTCGAAGTTTGTCCGGTCCACGACCCTGGCCTTACCGC
TCACGCCGTCGCCGACTCCTCCGCGGCTCTTCGGCGAGCCTTCCCACCCG
ACCGTATCGGTCAGCCGGCCGGTGTCGAAGTTATCCGCCTGCAACGATGG
TGGTGTCTCCGCCTCGTCTTTGCCGGTGGCACCATCAGCACCGCCGCTGC
CGCCGCCGCCGCCGTTGTTTGCTCCTTCCGTCGGGGGCGCCGTGGCAGCG
TCGTCTCGGTTGCTGTTGTTCAGCGCAGGCGGCA
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