mRNA_Ecto-sp13_S_contig1405.3158.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1405.3158.1
Unique NamemRNA_Ecto-sp13_S_contig1405.3158.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1405.3158.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1405contigEcto-sp13_S_contig1405:2517..6090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.3830597-CDS-Ecto-sp13_S_contig1405:2516..26051681462750.3830597-CDS-Ecto-sp13_S_contig1405:2516..2605Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1405 2517..2605 -
1681462750.391738-CDS-Ecto-sp13_S_contig1405:6017..60901681462750.391738-CDS-Ecto-sp13_S_contig1405:6017..6090Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1405 6018..6090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1405.3158.1prot_Ecto-sp13_S_contig1405.3158.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1405 2517..6090 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1405.3158.1

>prot_Ecto-sp13_S_contig1405.3158.1 ID=prot_Ecto-sp13_S_contig1405.3158.1|Name=mRNA_Ecto-sp13_S_contig1405.3158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
GAIPPELGGLTALTGLGLHQNNLSGSIPRELGQLKALRYAWFNENNFSGE
MCL*
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mRNA from alignment at Ecto-sp13_S_contig1405:2517..6090-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1405.3158.1 ID=mRNA_Ecto-sp13_S_contig1405.3158.1|Name=mRNA_Ecto-sp13_S_contig1405.3158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3574bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1405:2517..6090- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCCATTCCGCCGGAGTTGGGCGGGCTGACGGCTCTAACGGGGCTAGG
TCTGCACCAGAATAATCTTTCCGGTGAGGGCTACAGTTGGCTGTCTCGTG
TGTCGTGAGTCTGGCTGTCAGTGGTTCACATTTTGGTGTGTTCTTTGCTG
ACCTGTCCTTGTCGTTCGTGGCTTCTCTGCCTTGGGAGCGACCGGTGGCC
ACGTCGTGTACCTGTCCCTTTTCGCCACTTTGAACGTTGACCTCAGACGC
GCAGGAAGTTCACAAGACTACGTCGCCAAAAAGGGAAGAAACAACCGCTG
GTGTACCCCTCTTGGCTCCGCGATTTTACATTTCTGGAGAGGCCAGCCAT
GCACAGTGCCTCTCTTTGCAAATACGTTTCTGCTGCATCGTAATGAAAGC
CATGCTGAAATGGGCCCTATTGAATCGAGCTGTTGTCGTACGTGCCATGC
ATCGCTCACCGGGATGATTGAGGTGGCGCCCGCGGTGCATTGAGAAACTA
TACTAGGACTCGGTGGAGTTTTGTTTCGCCAGGGTGCACTTCCGCACGGG
ACGGTGCTTACAACGTTTGAACAGGAAGTATTCAAAGAACAAGGCCATAT
GATTGAGCGCACCTCAGAAACAATTACCCCGATCGTGAAAATTTCGGGAA
CACTGGTGGAGAAACATCACGGGGTGTCGCCCCGTGATGGAGAGTGCATT
GTCGGTACATGTGTCACGTTGCTTGACACCTTTGGCTTATGTGTGTCACC
TTTGGCATATGTGTGTCACCTTTGGCAAATGTGTGTCGTCTATTTGCAAC
GAGTAACCTCAACTAGGTATCGCAGAACGCAGGTGTAACGCTCATACAAC
TCAATATCACCTGAACACCCCGCGGCAAGTTGTGCTCACTTTGAACATCC
GAAAGCAGCGAAGAAAACCTGCGGAGTCCAAGAGAGAGGGCGATAATGCG
GCGAAACCGAAAAGTCTAGACTACGAGTCCTGTGCACAACACAAACGATT
TTCAGGCAGAAGTCAATGTACGGCACCGTCCGTTTGATGCCCTCGCGAAG
TTCAACGAAGCTTGCGTTCCATCCAACAGATACCGCTATGAGCGTGTAAC
TACCTCGAGGATGCTCGATCATTTTAACACAACGTGGTGCGATCATACCC
TTCGCGCGGAGTGAGGGTCCTCGACCCAGCACAACATGATCTACTCGACC
ACCATCATGGTTACCGCCAAAAAAATACAGAGGTAAAAAAGAATCGGTAA
CCTGGTTGCCGAGTTCACGAAGTGAATTGGCTTGTTTTACAACGTCGTTG
CCGAGTGATGAAAACCCAACCCCGATGGCAAACACCGGAGGGGTCTTTTC
GCTGGGGGTGGGCAATAGTAGTGAGACCGCAAGTCGTTTCGAAACCGCTC
GCACCCCCGGCGCGTTCTGACAGCGCCTTGGATGCTTTTCCCTTGTAACA
AGCGCCACATACTTCGAAGTACATTTCATAGGAGACCGTGCAGGGGGTCG
TGCGACATACCTTGCATACACCGTCACAAACGCACCCTCAGGCTTGCTCG
TCCATTGCCCGGACGCTGGAAATGTGGCAACTACAGAACACGTTCGGAAC
TGATTATTGCGCCTTCCGAATACTTCAATTCAACGAACGTACATCCACTC
TATTTGAACCCGACGCACAACGGGTTTGACAACTGTTGGGGCAGGTTCAA
CTGCGCCTGATTGCCGTTTCTCACTCGACAAGGTGTCACCTGGACAACGT
ATTCCTATCCCTTTATTTGCTTTGGAAAATTCAGTGAACAGCAATAGATA
GAGTAGTGATCACGCTGAACAGGGAAAAAGGATGACGGTTATGCGTACAT
ACCACTCAAAACATGGAAATAGGATGGCGGTTATTGTGAAACTGGAGCTC
CGTCGATCAAAGGCCTGCGCATTGTCGTAGAATTAGAAAGGCGGGTTTAT
CGTGATGCATGATTTTACAGCACAGGATGCTCTTGCACCCCGAGCGACAC
AACTCAAGAACCAGTTTTCAGAAGTTTCATTGAAGGCAGAAGACATACCC
GCCGAAACGTGGCAAACGCGGAATGCGCACGCTGGCGTGGTCAGATGCGA
AAGAAGAACTTTCGGGAGAACCCTCTCGGAAAAATCACAACAGAGAGTCT
TCGACGGCTTGCTTCTCTTGGTGTCATAATGGAAAGCATTGGTGAGGGTT
AGAACTTAATTAGGACATGTATGGTCCTGGCTTGACGTGTCTCATAATAT
ACTATTCAGGTTCTCGATAGTTAGTTGTTGACCTCATCGCTCAAGAATGA
CAGCTCCGCCCTATCGACACTGGTCAGATTGATGCCAATAGGCGTATCAC
CTAATTCTGCACTTGAACTTTCTTTCCGTGTGGGCCGTTGGGCAAGCGCA
AGAGTGTAGGCTAGGAGGGGCTCCACATTGGTGGCGTTGGAAGGTCGCAA
GTCTCCGGCATCGACGACATCGTGTTGGTCTGTTCGACCGGGTTTGAACT
CTCACGTACTCGGAGTGGCGATTCCTGTCGGAAACCTTGGGTGCATTGAC
ACCTCGGGTGTATCGAAAGCCTTTTCACGTCTGCCCTCTTTCCATGAGTC
GACGCGTCAAGCGGACAGTCATGGAGACCAAACGTCGATTGGTCGCACGT
TCTCTCTCGTCGACCAGCATCTCTGTTTCCGTACTTGTAAGCGTACGCGT
GAGATTTTTTTGCCAAGGCCAACACCTGTCCAGAAACACGATTTTCTGTT
CAACGAGTGGTACAACACGAACGTCGAGCGGACATCTCCCTGCAGGAGCA
GACGTTGTCTTTTACGTTAGGGGGTGTCCCAGTGACCGATTGCTCCAGGT
GTTCGACATGTTTGTTTGCCCACAATGAATGATTTGTCACCCGTACAACG
GCAGACGCAGCCGTGCTGTTGGAGAAGTCAGCCGTTGGTCTCTTCTGCCC
TTTACCGGTGACATGTATTCGAAGGGTCGCCATCTACCGTAAAGGAAAAA
CACAAGAGAGTAAACGAAGACATTGTCTAGTTCTCCCGTCTCCCAAGGCC
TCCCATTTTCGAACACCACAACAAGAGCCAATTTCACACGAGGTTTTCGA
AACATGGTTTGCAGGTAAGGTAAGGGCACTTTGTTTGTTGCCATCGATAA
CGCACAGACCGTTCCTTCTCGCGAGGAGGTATGCTCCGGCACAATGCGTT
GCGAAGTGAACCCCCACTCATTCAGAATTAATTGCTCGCGACGTCATTGC
GTGAGCACCACCAGAATGCGCGAGGTTGGTGTGTTGCTCGCGATGATCCG
CTGCCCGTCGAAGTTCTCTGATTCGGTTCTAATCTGAGTCTCATGACTCT
GCTTGCTTCGATCGACGATGCTGACACTGGGGCATTCCGAAATAGATGTC
GTTCGCGTGCGGAAGGAATGAATCAGCGGCTGAAACCATGAACCTGCGGT
GATCCCGCAACGTGTGCCCCTTGCACGTTTCTCAGGCTCCATTCCAAGGG
AGCTTGGACAACTGAAGGCACTGCGGTACGCTTGGTTCAACGAGAACAAC
TTCAGCGGTGAGATGTGCTTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1405:2517..6090-

>mRNA_Ecto-sp13_S_contig1405.3158.1 ID=mRNA_Ecto-sp13_S_contig1405.3158.1|Name=mRNA_Ecto-sp13_S_contig1405.3158.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1405:2517..6090- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCCATTCCGCCGGAGTTGGGCGGGCTGACGGCTCTAACGGGGCTAGG
TCTGCACCAGAATAATCTTTCCGGCTCCATTCCAAGGGAGCTTGGACAAC
TGAAGGCACTGCGGTACGCTTGGTTCAACGAGAACAACTTCAGCGGTGAG
ATGTGCTTGTAG
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