mRNA_Ecto-sp13_S_contig14048.3157.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14048.3157.1
Unique NamemRNA_Ecto-sp13_S_contig14048.3157.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14048.3157.1 vs. uniprot
Match: A0A6H5LDE6_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDE6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.710e-20
Identity = 47/59 (79.66%), Postives = 49/59 (83.05%), Query Frame = 2 
Query:    2 PTIKTDGLRASRKNRSFAGTLKRWDSMASMRNPSSSTNPQYLSEEMIMAKNVRGHTALT 178
            P IKTDGLRASRK+RS AGT KRWDSMASMRNP      QYL EEMI+AKNVRGHTALT
Sbjct:  790 PKIKTDGLRASRKDRSLAGTSKRWDSMASMRNPPCPPKSQYLREEMIVAKNVRGHTALT 848
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BLAST of mRNA_Ecto-sp13_S_contig14048.3157.1 vs. uniprot
Match: D8LT30_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT30_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 3.930e-16
Identity = 46/62 (74.19%), Postives = 50/62 (80.65%), Query Frame = 2 
Query:    2 PTIKTDGLR---ASRKNRSFAGTLKRWDSMASMRNPSSSTNPQYLSEEMIMAKNVRGHTALT 178
            PTIKTDGL    AS K+RS AGTLKRWDS+ASMR+P    NPQYL E MI+AKNVRGHTALT
Sbjct:  537 PTIKTDGLGPNWASWKDRSLAGTLKRWDSIASMRSPPP-PNPQYLRERMIVAKNVRGHTALT 597
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14048.3157.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LDE6_9PHAE8.710e-2079.66Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D8LT30_ECTSI3.930e-1674.19Ankyrin Repeat Transient Receptor Potential Channe... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14048contigEcto-sp13_S_contig14048:28..610 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size182
Hectar predicted targeting categoryother localisation
Exons2
Cds size180
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.3470886-CDS-Ecto-sp13_S_contig14048:27..1541681462750.3470886-CDS-Ecto-sp13_S_contig14048:27..154Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14048 28..154 +
1681462750.3575416-CDS-Ecto-sp13_S_contig14048:555..6081681462750.3575416-CDS-Ecto-sp13_S_contig14048:555..608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14048 556..608 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14048.3157.1prot_Ecto-sp13_S_contig14048.3157.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14048 28..608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14048.3157.1

>prot_Ecto-sp13_S_contig14048.3157.1 ID=prot_Ecto-sp13_S_contig14048.3157.1|Name=mRNA_Ecto-sp13_S_contig14048.3157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=60bp
ADDQDRWSQGLAEEQELRRDIETLGLHGEHAQSVVLHEPAVSERGNDHGE
ERAGPHGANL
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mRNA from alignment at Ecto-sp13_S_contig14048:28..610+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14048.3157.1 ID=mRNA_Ecto-sp13_S_contig14048.3157.1|Name=mRNA_Ecto-sp13_S_contig14048.3157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=583bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14048:28..610+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGACGATCAAGACAGATGGTCTCAGGGCCTCGCGGAAGAACAGGAGCT
TCGCCGGGACATTGAAACGCTGGGACTCCATGGCGAGCATGCGCAATCCG
TCGTCCTCCACGAACCCGCAGTATCTGGTGAGGCTGGCGTCGGTTTTTTA
TGGGTGGGTTTTTCCAGCTGTTGCTTGTGACACAATGCCCGCTCTATCCC
TGCCATGTGTGCAAGTTCTGATTACCGGTGTGGTCATCCGGAAACTTTTA
CACTACATGTTGCAAATGTGTGCACTAACATTTACCTGCGCCAAAAAGAT
ATTCCCCACACGGAAGCGGGCAAGGGGGGGGAAGGGAGGAGGTTTTTCGA
CAACATGGTCACACGCGGAACGGGTCGGGCTACAGGGACTCGGCGCATCC
ATGCAGCGGGAACAGGAGGCAAAGTCACGAGCCTCGCCCTGATTTTCTCC
CTCCTCGCCTGTTGCTGCCGTGTTGCTCGCTACCGCGAAACGAAAATCAC
CCCGGAACCCACGAACGAGTGGCAACAGAGCGAGGAAATGATCATGGCGA
AGAACGTGCGGGGCCACACGGCGCTAACTTGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14048:28..610+

>mRNA_Ecto-sp13_S_contig14048.3157.1 ID=mRNA_Ecto-sp13_S_contig14048.3157.1|Name=mRNA_Ecto-sp13_S_contig14048.3157.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=180bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14048:28..610+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGACGATCAAGACAGATGGTCTCAGGGCCTCGCGGAAGAACAGGAGCT
TCGCCGGGACATTGAAACGCTGGGACTCCATGGCGAGCATGCGCAATCCG
TCGTCCTCCACGAACCCGCAGTATCTGAGCGAGGAAATGATCATGGCGAA
GAACGTGCGGGGCCACACGGCGCTAACTTG
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