prot_Ecto-sp13_S_contig14046.3156.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig14046.3156.1
Unique Name	prot_Ecto-sp13_S_contig14046.3156.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	88

Homology

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: A0A8D1CTC0_PIG (KH type-2 domain-containing protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D1CTC0_PIG)

HSP 1 Score: 168 bits (425), Expect = 5.300e-52
Identity = 85/88 (96.59%), Postives = 87/88 (98.86%), Query Frame = 0

Query:    1 MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            MATNMSKKRKFVADGVF+ ELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRF+FPDDAVELYA
Sbjct:    1 MATNMSKKRKFVADGVFFVELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFSFPDDAVELYA 88

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: D7G6B0_ECTSI (KH type-2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B0_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 6.750e-50
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0

Query:    5 MSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            MSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA
Sbjct:    1 MSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 84

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: A0A7S2UUD3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUD3_9STRA)

HSP 1 Score: 157 bits (398), Expect = 8.620e-47
Identity = 80/88 (90.91%), Postives = 84/88 (95.45%), Query Frame = 0

Query:    1 MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            MA+N+SKKRKFVADGVFYAELN+LLT ELAE+GYAGVEVRVTPLRTEIII ATR QNVLGEKGQRIRELTSVVQKRFNF DDAVELYA
Sbjct:    1 MASNISKKRKFVADGVFYAELNQLLTSELAEDGYAGVEVRVTPLRTEIIIRATRTQNVLGEKGQRIRELTSVVQKRFNFADDAVELYA 88

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: A0A836CGW2_9STRA (Prokaryotic type K homology domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGW2_9STRA)

HSP 1 Score: 155 bits (393), Expect = 4.520e-46
Identity = 77/88 (87.50%), Postives = 85/88 (96.59%), Query Frame = 0

Query:    1 MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            M TN+SKKRKFVADGVFYAELNEL+ +ELAE+GY+GVEVRVTPLRTEIII AT+PQNVLGEKGQRIRELTSVVQKRF+FPD+AVELYA
Sbjct:    1 MTTNISKKRKFVADGVFYAELNELMRRELAEDGYSGVEVRVTPLRTEIIIRATQPQNVLGEKGQRIRELTSVVQKRFSFPDNAVELYA 88

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: W7TS51_9STRA (40s ribosomal protein s3-3 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS51_9STRA)

HSP 1 Score: 154 bits (390), Expect = 2.140e-45
Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 0

Query:    1 MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            M TN+SKKRKF+ADGVFYAELNELLT+ELAE+GYAGVEVRV PLRTEIIISATR QNVLGEKGQRIRELT+V+QKRFNFPD  VEL+A
Sbjct:    1 MTTNISKKRKFIADGVFYAELNELLTRELAEDGYAGVEVRVVPLRTEIIISATRTQNVLGEKGQRIRELTTVIQKRFNFPDGVVELFA 88

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: A0A7N0VL14_KALFE (30S ribosomal protein S3, chloroplastic n=1 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0VL14_KALFE)

HSP 1 Score: 150 bits (378), Expect = 2.430e-45
Identity = 73/87 (83.91%), Postives = 82/87 (94.25%), Query Frame = 0

Query:    2 ATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            AT MSKKRKFVADGVFYAELNE+LT+ELAE+GY+GVEVR TP+RTEIII ATRPQNVLGEKG+RIRELTS+VQKRF FP+ +VELYA
Sbjct:    3 ATQMSKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRATPMRTEIIIRATRPQNVLGEKGRRIRELTSIVQKRFKFPEKSVELYA 89

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: A0A8B8IZW7_PHODC (40S ribosomal protein S3-3 isoform X1 n=2 Tax=Arecaceae TaxID=4710 RepID=A0A8B8IZW7_PHODC)

HSP 1 Score: 154 bits (388), Expect = 2.980e-45
Identity = 76/88 (86.36%), Postives = 85/88 (96.59%), Query Frame = 0

Query:    1 MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            MAT MSKKRKFVADGVFYAELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRFNFP+++VELYA
Sbjct:    1 MATQMSKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPENSVELYA 88

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: A0A2P2LRP3_RHIMU (30S ribosomal protein S3, chloroplastic n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2LRP3_RHIMU)

HSP 1 Score: 150 bits (380), Expect = 3.340e-45
Identity = 74/88 (84.09%), Postives = 84/88 (95.45%), Query Frame = 0

Query:    1 MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            MAT MSKKRKFVADGVFYAELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELT++VQKRF FPD++VELYA
Sbjct:    1 MATQMSKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTALVQKRFKFPDNSVELYA 88

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: B4G0E1_MAIZE (40S ribosomal protein S3-1 n=1 Tax=Zea mays TaxID=4577 RepID=B4G0E1_MAIZE)

HSP 1 Score: 150 bits (378), Expect = 5.420e-45
Identity = 73/88 (82.95%), Postives = 84/88 (95.45%), Query Frame = 0

Query:    1 MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            MAT +SKK+KFV+DGVFYAELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRFNFP++ VELYA
Sbjct:    1 MATQISKKKKFVSDGVFYAELNEMLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFNFPENGVELYA 88

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BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Match: A0A6I9RV82_ELAGV (40S ribosomal protein S3-3 isoform X2 n=4 Tax=Mesangiospermae TaxID=1437183 RepID=A0A6I9RV82_ELAGV)

HSP 1 Score: 152 bits (383), Expect = 5.500e-45
Identity = 75/88 (85.23%), Postives = 85/88 (96.59%), Query Frame = 0

Query:    1 MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIIISATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA 88
            MAT MSKKRKFVADGVFYAELNE+LT+ELAE+GY+GVEVRVTP+RTEIII ATR QNVLGEKG+RIRELTSVVQKRF+FP+++VELYA
Sbjct:    1 MATQMSKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSVVQKRFSFPENSVELYA 88

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig14046.3156.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A8D1CTC0_PIG	5.300e-52	96.59	KH type-2 domain-containing protein n=1 Tax=Sus sc...	[more]
D7G6B0_ECTSI	6.750e-50	100.00	KH type-2 domain-containing protein n=1 Tax=Ectoca...	[more]
A0A7S2UUD3_9STRA	8.620e-47	90.91	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A836CGW2_9STRA	4.520e-46	87.50	Prokaryotic type K homology domain-containing prot...	[more]
W7TS51_9STRA	2.140e-45	86.36	40s ribosomal protein s3-3 n=3 Tax=Monodopsidaceae...	[more]
A0A7N0VL14_KALFE	2.430e-45	83.91	30S ribosomal protein S3, chloroplastic n=1 Tax=Ka...	[more]
A0A8B8IZW7_PHODC	2.980e-45	86.36	40S ribosomal protein S3-3 isoform X1 n=2 Tax=Arec...	[more]
A0A2P2LRP3_RHIMU	3.340e-45	84.09	30S ribosomal protein S3, chloroplastic n=1 Tax=Rh...	[more]
B4G0E1_MAIZE	5.420e-45	82.95	40S ribosomal protein S3-1 n=1 Tax=Zea mays TaxID=...	[more]
A0A6I9RV82_ELAGV	5.500e-45	85.23	40S ribosomal protein S3-3 isoform X2 n=4 Tax=Mesa...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015946	K homology domain-like, alpha/beta	GENE3D	3.30.300.20		coord: 1..88 e-value: 9.1E-45 score: 152.6
IPR004044	K Homology domain, type 2	PFAM	PF07650	KH_2	coord: 20..86 e-value: 7.0E-12 score: 45.0
IPR004044	K Homology domain, type 2	PROSITE	PS50823	KH_TYPE_2	coord: 21..88 score: 11.881
None	No IPR available	PANTHER	PTHR11760	30S/40S RIBOSOMAL PROTEIN S3	coord: 1..88
None	No IPR available	PANTHER	PTHR11760:SF41		coord: 1..88
IPR009019	K homology domain superfamily, prokaryotic type	SUPERFAMILY	54814	Prokaryotic type KH domain (KH-domain type II)	coord: 10..87

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig14046	contig	Ecto-sp13_S_contig14046:3734..4529 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig14046.3156.1	mRNA_Ecto-sp13_S_contig14046.3156.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig14046 3734..4529 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig14046.3156.1 ID=prot_Ecto-sp13_S_contig14046.3156.1|Name=mRNA_Ecto-sp13_S_contig14046.3156.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=88bp
MATNMSKKRKFVADGVFYAELNELLTQELAEEGYAGVEVRVTPLRTEIII
SATRPQNVLGEKGQRIRELTSVVQKRFNFPDDAVELYA

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015946	KH_dom-like_a/b
IPR004044	KH_dom_type_2
IPR009019	KH_sf_prok-type