mRNA_Ecto-sp13_S_contig14041.3152.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14041.3152.1
Unique NamemRNA_Ecto-sp13_S_contig14041.3152.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14041.3152.1 vs. uniprot
Match: D8LKR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR0_ECTSI)

HSP 1 Score: 67.8 bits (164), Expect = 1.770e-10
Identity = 37/38 (97.37%), Postives = 37/38 (97.37%), Query Frame = 3 
Query:  312 ATDAMTMAAADEANPLAHPDALRRRRTLRDAGLAAKAK 425
            A DAMTMAAADEANPLAHPDALRRRRTLRDAGLAAKAK
Sbjct:  236 AKDAMTMAAADEANPLAHPDALRRRRTLRDAGLAAKAK 273
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BLAST of mRNA_Ecto-sp13_S_contig14041.3152.1 vs. uniprot
Match: A0A6H5L5F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5F4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 1.720e-8
Identity = 32/34 (94.12%), Postives = 33/34 (97.06%), Query Frame = 3 
Query:  324 MTMAAADEANPLAHPDALRRRRTLRDAGLAAKAK 425
            MTMAAA+EANPLAHPD LRRRRTLRDAGLAAKAK
Sbjct:    1 MTMAAANEANPLAHPDVLRRRRTLRDAGLAAKAK 34
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14041.3152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKR0_ECTSI1.770e-1097.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5F4_9PHAE1.720e-894.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14041contigEcto-sp13_S_contig14041:2..851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size440
Hectar predicted targeting categoryother localisation
Exons2
Cds size231
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.0369241-UTR-Ecto-sp13_S_contig14041:1..2101681462750.0369241-UTR-Ecto-sp13_S_contig14041:1..210Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14041 2..210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462750.0479178-CDS-Ecto-sp13_S_contig14041:210..3181681462750.0479178-CDS-Ecto-sp13_S_contig14041:210..318Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14041 211..318 +
1681462750.058802-CDS-Ecto-sp13_S_contig14041:728..8511681462750.058802-CDS-Ecto-sp13_S_contig14041:728..851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14041 729..851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14041.3152.1prot_Ecto-sp13_S_contig14041.3152.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14041 211..851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14041.3152.1

>prot_Ecto-sp13_S_contig14041.3152.1 ID=prot_Ecto-sp13_S_contig14041.3152.1|Name=mRNA_Ecto-sp13_S_contig14041.3152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MSGSGALESLLVTSSPLRERELSFSGGLSHRNAAATDAMTMAAADEANPL
AHPDALRRRRTLRDAGLAAKAKAAAAA
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mRNA from alignment at Ecto-sp13_S_contig14041:2..851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14041.3152.1 ID=mRNA_Ecto-sp13_S_contig14041.3152.1|Name=mRNA_Ecto-sp13_S_contig14041.3152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=850bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14041:2..851+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACAATGCTCCGTCCTCTCGAGGACGCGTGGTCAATAGTCTAACAGCT
CAGGCATGCAAAACATAAGAATACGCCCTCCCCCCTCCCCTTCCACCTTT
TTGCCGCTGTTTGGTGGACTCTCATCACCCTAAAACACATCCACACCCCC
TTCAACGTTTCTTGTCTTTGTTGCCTTTGGGTTGGGGTATCTATGAGCAG
AACGCGTCCATGTCGGGCAGCGGCGCGTTGGAGTCGCTGCTCGTAACGTC
TTCGCCGCTGCGGGAAAGGGAGCTCTCTTTCTCGGGCGGCCTCTCGCACA
GGAACGCCGCTGCAACGGTAAATCAGACACACGCACTACCTGCTGTTGTT
CGGAGTACAATGTAGACAATCTCACGAGACAAAGAGAAAGAGTGTTGATC
TTTTTACAGGGCGGGTGCTTTTGATTGATTTGTGTGGTTGAATGAAGCAA
GCAACGCAGACGAAAAGATAGAGACAGAGACAGAGAAGATGCGATGACTA
TAATCTTTACCCGCCCCTCTTGCGGTTGTCTCTGATGTTGTTGAGTTGTT
GCCACGCTTCTTCGTCGTTTTGGCCGATGTTTTTGCTGTTGCAAGACGCG
ATGACTATTTTCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCG
CCTCCTCTTGCTGCTGTCTGGTATCGTCGTTGCTGCTGTTGTTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGCAGGACGCGATGACGATGGCCGCCGC
AGACGAGGCCAACCCTCTCGCACACCCGGACGCCCTGCGACGAAGACGGA
CCCTACGCGATGCCGGCCTGGCCGCCAAGGCCAAAGCCGCCGCCGCTGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14041:2..851+

>mRNA_Ecto-sp13_S_contig14041.3152.1 ID=mRNA_Ecto-sp13_S_contig14041.3152.1|Name=mRNA_Ecto-sp13_S_contig14041.3152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14041:2..851+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGGCAGCGGCGCGTTGGAGTCGCTGCTCGTAACGTCTTCGCCGCT
GCGGGAAAGGGAGCTCTCTTTCTCGGGCGGCCTCTCGCACAGGAACGCCG
CTGCAACGGACGCGATGACGATGGCCGCCGCAGACGAGGCCAACCCTCTC
GCACACCCGGACGCCCTGCGACGAAGACGGACCCTACGCGATGCCGGCCT
GGCCGCCAAGGCCAAAGCCGCCGCCGCTGCC
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