mRNA_Ecto-sp13_S_contig1404.3150.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1404.3150.1
Unique NamemRNA_Ecto-sp13_S_contig1404.3150.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1404.3150.1 vs. uniprot
Match: A0A6H5KYH1_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH1_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 2.370e-55
Identity = 106/152 (69.74%), Postives = 110/152 (72.37%), Query Frame = 2 
Query:    2 NSILLEEARAGRVDGLNACLNDFASRMDVNGALDRSFLSPLCLACRGGHEEAALLLLHRANADPNNATGANEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTPLALAVGAGLQRVVEELLARGARVDTPRPEDGWTALHLCAAR 457
            +S+LLEEARAGRVDGL ACL++FASR DVNGALDRSFLSPLCLACRGGHEEAALLLLHRANADPNNATGA E                                     TPLALAV  GLQRVVEELLARGARVDTPRPEDGWTALHLCAAR
Sbjct:   36 SSVLLEEARAGRVDGLKACLDNFASRTDVNGALDRSFLSPLCLACRGGHEEAALLLLHRANADPNNATGAAEQRYGQTTYDDLTGGSGVGGAGGAPPP-----------TPLALAVVTGLQRVVEELLARGARVDTPRPEDGWTALHLCAAR 176
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BLAST of mRNA_Ecto-sp13_S_contig1404.3150.1 vs. uniprot
Match: D8LGY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY9_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 7.790e-9
Identity = 28/31 (90.32%), Postives = 29/31 (93.55%), Query Frame = 2 
Query:    2 NSILLEEARAGRVDGLNACLNDFASRMDVNG 94
            NSILLEEARAGRVDGL ACL+DFASR DVNG
Sbjct:   36 NSILLEEARAGRVDGLKACLDDFASRTDVNG 66
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1404.3150.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYH1_9PHAE2.370e-5569.74Protein kinase domain-containing protein n=1 Tax=E... [more]
D8LGY9_ECTSI7.790e-990.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1404contigEcto-sp13_S_contig1404:11638..12096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size459
Hectar predicted targeting categoryother localisation
Exons1
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.7739766-CDS-Ecto-sp13_S_contig1404:11637..120961681462749.7739766-CDS-Ecto-sp13_S_contig1404:11637..12096Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1404 11638..12096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1404.3150.1prot_Ecto-sp13_S_contig1404.3150.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1404 11638..12096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1404.3150.1

>prot_Ecto-sp13_S_contig1404.3150.1 ID=prot_Ecto-sp13_S_contig1404.3150.1|Name=mRNA_Ecto-sp13_S_contig1404.3150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
QQHPAGRSEGRQSGWPQCVPERLRVQDGRQRCPRPLLPVPPVPRVPRGTR
RGGAAPAAPGQRRPEQRHGSQRGRRRRHRGGSCRAEVRSNHRRRVYWRWW
RRRRGCAASHASSSGGRRRSPASRRRASRSGGEGRYPAPRGRLDGPPPVR
RAR
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mRNA from alignment at Ecto-sp13_S_contig1404:11638..12096+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1404.3150.1 ID=mRNA_Ecto-sp13_S_contig1404.3150.1|Name=mRNA_Ecto-sp13_S_contig1404.3150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1404:11638..12096+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAGCATCCTGCTGGAAGAAGCGAGGGCCGGCAGAGTGGATGGCCTCA
ATGCGTGCCTGAACGACTTCGCGTCCAGGATGGACGTCAACGGTGCCCTC
GACCGCTCCTTCCTGTCCCCCCTGTGCCTCGCGTGCCGCGGGGGACACGA
AGAGGCGGCGCTGCTCCTGCTGCACCGGGCCAACGCCGACCCGAACAACG
CCACGGGAGCCAACGAGGCCGCCGCCGCCGCCACCGCGGCGGCAGCTGCC
GGGCAGAGGTACGGTCAAACCACCGACGACGAGTTTACTGGCGATGGTGG
CGGCGGCGCCGGGGGTGCGCCGCCTCCCACGCCTCTAGCTCTGGCGGTCG
GCGCCGGTCTCCAGCGAGTCGTCGAAGAGCTTCTCGCTCGGGGGGCGAGG
GTAGATACCCCGCGCCCCGAGGACGGCTGGACGGCCCTCCACCTGTGCGC
CGCGCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1404:11638..12096+

>mRNA_Ecto-sp13_S_contig1404.3150.1 ID=mRNA_Ecto-sp13_S_contig1404.3150.1|Name=mRNA_Ecto-sp13_S_contig1404.3150.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1404:11638..12096+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACAGCATCCTGCTGGAAGAAGCGAGGGCCGGCAGAGTGGATGGCCTCA
ATGCGTGCCTGAACGACTTCGCGTCCAGGATGGACGTCAACGGTGCCCTC
GACCGCTCCTTCCTGTCCCCCCTGTGCCTCGCGTGCCGCGGGGGACACGA
AGAGGCGGCGCTGCTCCTGCTGCACCGGGCCAACGCCGACCCGAACAACG
CCACGGGAGCCAACGAGGCCGCCGCCGCCGCCACCGCGGCGGCAGCTGCC
GGGCAGAGGTACGGTCAAACCACCGACGACGAGTTTACTGGCGATGGTGG
CGGCGGCGCCGGGGGTGCGCCGCCTCCCACGCCTCTAGCTCTGGCGGTCG
GCGCCGGTCTCCAGCGAGTCGTCGAAGAGCTTCTCGCTCGGGGGGCGAGG
GTAGATACCCCGCGCCCCGAGGACGGCTGGACGGCCCTCCACCTGTGCGC
CGCGCGAGG
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