mRNA_Ecto-sp13_S_contig14033.3146.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14033.3146.1
Unique NamemRNA_Ecto-sp13_S_contig14033.3146.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: D7G3E7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E7_ECTSI)

HSP 1 Score: 184 bits (466), Expect = 2.240e-48
Identity = 111/127 (87.40%), Postives = 112/127 (88.19%), Query Frame = 2 
Query:    2 KVVRSIASTPKRGVGSGGIAGGGWDKSPLTDSGGXXXXXXXVGGMYGNDXXXXXXXXHH--RHSRTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQIP 376
            KVVRSIASTPKRGVGSGGIA GGW+KSPLTDSG XXXXXXX        XXXXXXXX    RH RTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQIP
Sbjct:  762 KVVRSIASTPKRGVGSGGIAAGGWEKSPLTDSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHPRTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQIP 888
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A835Z834_9STRA (A distinct subfamily of CDD/CDA-like deaminases-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z834_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 5.290e-14
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 2 
Query:  188 RTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQ 370
            R+     V  V  +    NPLKPCGAC EWL+KIAEVNPDFKV+TFTD+ C GVYIE V  
Sbjct:  331 RSLHKGSVQKVQAQHAAVNPLKPCGACTEWLRKIAEVNPDFKVLTFTDTTCEGVYIESVTS 391
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A7S0FLT8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FLT8_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.110e-13
Identity = 37/62 (59.68%), Postives = 44/62 (70.97%), Query Frame = 2 
Query:  185 SRTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQ 370
            S+T R+ +V H P +    NPL PCGAC EWLKKIAE NP FKV+TFTD+ C GVYI  V +
Sbjct:   61 SKTKRT-VVVHSPDDI---NPLAPCGACNEWLKKIAESNPYFKVLTFTDADCNGVYITPVIE 118
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A7S4HMH9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HMH9_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.030e-12
Identity = 33/56 (58.93%), Postives = 40/56 (71.43%), Query Frame = 2 
Query:  188 RTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYI 355
            R  + ++V H   +    NPLKPCGAC EWLKKIAE NP FKV+TFTD+ C GVY+
Sbjct:   86 RKKKRTVVVHSAQDI---NPLKPCGACNEWLKKIAESNPYFKVVTFTDADCNGVYV 138
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A7S3M075_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M075_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.430e-12
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 2 
Query:  242 NPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDV 364
            NPLKPCGAC EWLKKIAEVNP+ +VITFTD+ C GV+IE +
Sbjct:  110 NPLKPCGACNEWLKKIAEVNPNLRVITFTDAGCRGVHIEQI 150
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A7S2WW95_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW95_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.050e-11
Identity = 31/43 (72.09%), Postives = 36/43 (83.72%), Query Frame = 2 
Query:  242 NPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQ 370
            NPLKPCGAC EWLKKIAEVNP F+++TFTD+ C G YIE V +
Sbjct:  582 NPLKPCGACSEWLKKIAEVNPAFRILTFTDANCTGTYIESVME 624
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A7S2DWK1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DWK1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.130e-11
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:  188 RTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGV 349
            R  + + V H   E L  NPL+PCGAC EWLKKIAE++ DFKV+TFTD+ C GV
Sbjct:   59 RKQKRTFVVHSSTEDL--NPLRPCGACNEWLKKIAEISTDFKVLTFTDADCNGV 110
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A7S2ES86_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ES86_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.530e-11
Identity = 34/56 (60.71%), Postives = 42/56 (75.00%), Query Frame = 2 
Query:  188 RTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYI 355
            R  + ++V H   E L  NPL+PCGAC EWLKKIAEV+ DFKV+TFTD+ C GVY+
Sbjct:  677 RKQKRTVVVHSSTEDL--NPLRPCGACNEWLKKIAEVSIDFKVLTFTDADCNGVYV 730
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A0M0JEH7_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JEH7_9EUKA)

HSP 1 Score: 74.3 bits (181), Expect = 4.300e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 2 
Query:  179 RHSRTSRSSIVAHVPPETLCSNPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDVAQ 370
            +H  T ++      P + +  NPL PCGACMEWL+KIAEVNPDFKV+TFT + C  V+I  +  
Sbjct:  354 KHEVTDQALERTTSPDDEVALNPLDPCGACMEWLRKIAEVNPDFKVLTFTSTSCEKVFITPIGD 417
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Match: A0A7R9UGC7_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGC7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 4.670e-11
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:  242 NPLKPCGACMEWLKKIAEVNPDFKVITFTDSRCGGVYIEDV 364
            NPLKPCGACMEWL+KIAEVNP F V+TFTD  C GVY E V
Sbjct:  325 NPLKPCGACMEWLRKIAEVNPQFAVLTFTDRDCKGVYREHV 365
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14033.3146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3E7_ECTSI2.240e-4887.40Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z834_9STRA5.290e-1460.66A distinct subfamily of CDD/CDA-like deaminases-do... [more]
A0A7S0FLT8_9STRA1.110e-1359.68Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S4HMH9_9STRA1.030e-1258.93Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S3M075_9STRA2.430e-1275.61Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S2WW95_9STRA1.050e-1172.09Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2DWK1_9STRA1.130e-1159.26Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]
A0A7S2ES86_9STRA1.530e-1160.71Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A0M0JEH7_9EUKA4.300e-1150.00Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7R9UGC7_9STRA4.670e-1178.05Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14033contigEcto-sp13_S_contig14033:2170..3233 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score144.1
Seed ortholog evalue3e-32
Seed eggNOG ortholog2880.D7G3E7
Model size1013
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.A distinct subfamily of CDD/CDA-like deaminases
EggNOG OGs293GQ@1,2RADN@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_006560.2
Cds size246
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.5663288-UTR-Ecto-sp13_S_contig14033:2169..27411681462749.5663288-UTR-Ecto-sp13_S_contig14033:2169..2741Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14033 2170..2741 -
1681462749.5770643-UTR-Ecto-sp13_S_contig14033:2792..28541681462749.5770643-UTR-Ecto-sp13_S_contig14033:2792..2854Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14033 2793..2854 -
1681462749.5964239-UTR-Ecto-sp13_S_contig14033:3100..32331681462749.5964239-UTR-Ecto-sp13_S_contig14033:3100..3233Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14033 3101..3233 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.5866663-CDS-Ecto-sp13_S_contig14033:2854..31001681462749.5866663-CDS-Ecto-sp13_S_contig14033:2854..3100Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14033 2855..3100 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14033.3146.1prot_Ecto-sp13_S_contig14033.3146.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14033 2855..3100 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14033.3146.1

>prot_Ecto-sp13_S_contig14033.3146.1 ID=prot_Ecto-sp13_S_contig14033.3146.1|Name=mRNA_Ecto-sp13_S_contig14033.3146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=82bp
MYGNDQGGGGGSNHHRHSRTSRSSIVAHVPPETLCSNPLKPCGACMEWLK
KIAEVNPDFKVITFTDSRCGGVYIEDVAQIP*
back to top

mRNA from alignment at Ecto-sp13_S_contig14033:2170..3233-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14033.3146.1 ID=mRNA_Ecto-sp13_S_contig14033.3146.1|Name=mRNA_Ecto-sp13_S_contig14033.3146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1064bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14033:2170..3233- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAAGTCGTCCGGAGTATCGCATCGACTCCGAAGCGAGGTGTTGGTAGCG
GCGGCATCGCCGGCGGCGGTTGGGATAAAAGCCCCCTCACAGATAGCGGC
GGCGGCGGCGGTAGGGGAGACGGTGTTGGTGGAATGTACGGCAACGACCA
GGGTGGTGGCGGCGGCAGCAATCACCATCGCCATTCGAGGACGAGCAGAA
GCAGCATCGTTGCGCACGTGCCGCCAGAAACTCTGTGTTCCAACCCGCTC
AAGCCTTGCGGCGCGTGCATGGAGTGGCTCAAGAAGATCGCGGAGGTGAA
CCCGGACTTCAAGGTCATCACCTTCACGGACTCTCGCTGCGGAGGCGTAT
ACATCGAGGACGTGGCCCAGATACCGTAGAAGAACTAGGAAGGCTCCGGT
TTCTCTCCACCGTTGATTCCATACAGTATAGTACGCAAAGGGCACAAATC
TTTGCGCAAGAGAGAGAGAAAAGGTCCCCGCAGTTTTCGTAGGAGTATGT
AGGTGGATAATATGATTGTTGATGCGGTCAACACAGCATCGATGTGTAGC
ACATCGTTGCCGGAAGGAAAGCTAAACGACCAGGCCTTTGGTTGGATGCC
TGCAAACAAACATGGACAGGACGCGTAGGGATATTCGCGCGCGTCGGCGG
TCATGCGGTAGGAACTGCGTTATTTCTAGTACTACTTCTAAATGCAGTTT
CGCGCTGTCGAAGTCTCCGTGTTGAATGAAATCCCGCGGAAAACTTCTTG
GTGCCAAGTCGGTCGGGTTGTGTCGTGGTGTTGAAAGGCAAGGTGAGGTA
AGAGTAGGCGGTGATGCGGTTTTACAAGGCAGAGTACAACACCATCTGTC
GCAAGGAAGCTGTCCACCTCAACATTGCCGCCGCCAATCATTCCTCTTGC
ACCTACATCGTGCCCCGCACAGATGATGGGGGGTGACGCATGATTTTCGT
GCCAAATGGGGCCGACGATTGACTACTATGTTGTGGCACCGTGCTGAAGG
AAGCATTGTTGTTGTCTTCAAGTTGGCTGTGGTTCCATGTCCATATCACC
AGTCAGTATGGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14033:2170..3233-

>mRNA_Ecto-sp13_S_contig14033.3146.1 ID=mRNA_Ecto-sp13_S_contig14033.3146.1|Name=mRNA_Ecto-sp13_S_contig14033.3146.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=246bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14033:2170..3233- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACGGCAACGACCAGGGTGGTGGCGGCGGCAGCAATCACCATCGCCA
TTCGAGGACGAGCAGAAGCAGCATCGTTGCGCACGTGCCGCCAGAAACTC
TGTGTTCCAACCCGCTCAAGCCTTGCGGCGCGTGCATGGAGTGGCTCAAG
AAGATCGCGGAGGTGAACCCGGACTTCAAGGTCATCACCTTCACGGACTC
TCGCTGCGGAGGCGTATACATCGAGGACGTGGCCCAGATACCGTAG
back to top