mRNA_Ecto-sp13_S_contig10317.315.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10317.315.1
Unique NamemRNA_Ecto-sp13_S_contig10317.315.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10317.315.1 vs. uniprot
Match: D7G4J5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4J5_ECTSI)

HSP 1 Score: 597 bits (1538), Expect = 1.420e-207
Identity = 329/369 (89.16%), Postives = 342/369 (92.68%), Query Frame = 1 
Query:    1 RAGTREESASPELVGVTREQRKREGSGASVSSLRSPSTPSGRRASGGPLSRLLPAPTGSIGSEGGDVSTGSDNKSVKAEVLAEEQPASTAAAPSGGSGNLAKKKKTFMEKFGDMLEAAAETAIPAAPGGGGVGYGSRAATARPREWEQWDAAPLLEFMKEEARTAADKARKEEIARTGGDKDKLVALVKAWYTPFLSQAEFVRQKEALTTQHVGMVDDSGRCVSAKSSSVASPVRGRRGGEGGPPSAAIGSADISPGLFLSRRSRAKNASPTSTKPGDPLRLSRAPEESGLELGGGDLDTASARSAAAGAPAGEGSGGISRAVVVGYVVDGGGGWGKVGSASCRDIHYLVEVEASSAEGGTRSWACYKR 1107
            RAGTREESASPELVG TREQRKREGSGASV+SLRSPSTPSGRRASGGPLSRL+PAPTGSI SEGGDVSTGSDNKSVK++VLAEEQPASTAAAPSGGSGNLAKKKKTFMEKFGDMLEAAAETAIPAAPGGGGVGYGSRAATA PREWEQWDA  LLEFMKEEARTAADKARKE+IARTGGDKDKLVALVK WYTPFLSQAEF+RQKEALTTQHVG VD+SGRCVSAK+SS+ASPVRGRRGGEGGP S AIGSAD+SPGLFLSRRSRAK+ SP STKPGD LRLS APEESGLELGGG  DTASARSAAAG    EG+GGI RAVVVGYVVDGGGGW KVGSA  RDIH+LVEVE  SA GGTR WACYKR
Sbjct:  343 RAGTREESASPELVGFTREQRKREGSGASVTSLRSPSTPSGRRASGGPLSRLMPAPTGSIVSEGGDVSTGSDNKSVKSDVLAEEQPASTAAAPSGGSGNLAKKKKTFMEKFGDMLEAAAETAIPAAPGGGGVGYGSRAATAGPREWEQWDAPLLLEFMKEEARTAADKARKEDIARTGGDKDKLVALVKTWYTPFLSQAEFIRQKEALTTQHVGTVDNSGRCVSAKTSSLASPVRGRRGGEGGPLSPAIGSADLSPGLFLSRRSRAKDTSPRSTKPGDALRLSPAPEESGLELGGGVFDTASARSAAAG----EGAGGIYRAVVVGYVVDGGGGWRKVGSAFSRDIHFLVEVEVFSAGGGTRFWACYKR 707
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10317.315.1 vs. uniprot
Match: A0A6H5JC90_9PHAE (PX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC90_9PHAE)

HSP 1 Score: 534 bits (1376), Expect = 8.330e-175
Identity = 304/377 (80.64%), Postives = 312/377 (82.76%), Query Frame = 1 
Query:  151 RLLPAPTGSIGSEGGDVSTGSDNKSVKAEVLAEEQPASTAAAPSGGSGNLAKKKKTFMEKFGDMLEAAAETAIPAAPGGGGVG-------------------------------------YGSRAATARPREWEQWDAAPLLEFMKEE--ARTAADKARKEEIARTGGDKDKLVALVKAWYTPFLSQAEFVRQKEALTTQHVGMVDDSGRCVSAKSSSVASPVRGRRGGEGGPPSAAIGSADISPGLFLSRRSRAKNASPTSTKPGDPLRLSRAPEESGLELGGGDLDTASARSAAAGAPAGEGSGGISRAVVVGYVVDGGGGWGKVGSASCRDIHYLVEVEASSAEGGTRSWACYKRFSDFRALWTGMSRRYPRME 1164
            RLLPAPT SI SEGGDVSTGSDNKSVKA+VLAEEQP+S AAAPSGGSGNLAK KKTFMEKFGDMLEAAAETAIPAAPGGGGVG                                     YGSRAATA PREWEQWDAAPLLEFMKEE  AR  ADK RKEEIARTGGDKDKLVALVKAWYTPFLSQAEF+RQKE L TQHVGMVDDSGRCVSAKSSS+ASPVRGRRG      SAAIGS+DISPGLFLSRRSRA+NASP STKPGD LRLS APEESGLELGGG LDTASARSAA GAPAGEGSGGI RAVVVGYVVDGGGG G+V SAS RDIHYLVEVEASSA GGTRSWACYKRFSDFRALWTG+SRRYPRME
Sbjct:    3 RLLPAPTASIVSEGGDVSTGSDNKSVKADVLAEEQPSSMAAAPSGGSGNLAK-KKTFMEKFGDMLEAAAETAIPAAPGGGGVGDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGGGVGYGSRAATAGPREWEQWDAAPLLEFMKEETQARMTADKVRKEEIARTGGDKDKLVALVKAWYTPFLSQAEFIRQKEVLATQHVGMVDDSGRCVSAKSSSLASPVRGRRGXXXXXXSAAIGSSDISPGLFLSRRSRARNASPRSTKPGDALRLSPAPEESGLELGGGVLDTASARSAAVGAPAGEGSGGIFRAVVVGYVVDGGGGRGRVASASSRDIHYLVEVEASSAGGGTRSWACYKRFSDFRALWTGLSRRYPRME 378
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10317.315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G4J5_ECTSI1.420e-20789.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JC90_9PHAE8.330e-17580.64PX domain-containing protein n=1 Tax=Ectocarpus sp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10317contigEcto-sp13_S_contig10317:456..3632 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1167
Hectar predicted targeting categoryother localisation
Exons6
Cds size1164
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10317.315.1prot_Ecto-sp13_S_contig10317.315.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10317 456..3631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462522.7588396-CDS-Ecto-sp13_S_contig10317:455..6071681462522.7588396-CDS-Ecto-sp13_S_contig10317:455..607Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10317 456..607 +
1681462522.7692816-CDS-Ecto-sp13_S_contig10317:834..9971681462522.7692816-CDS-Ecto-sp13_S_contig10317:834..997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10317 835..997 +
1681462522.7786953-CDS-Ecto-sp13_S_contig10317:1461..16291681462522.7786953-CDS-Ecto-sp13_S_contig10317:1461..1629Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10317 1462..1629 +
1681462522.7878745-CDS-Ecto-sp13_S_contig10317:1905..20161681462522.7878745-CDS-Ecto-sp13_S_contig10317:1905..2016Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10317 1906..2016 +
1681462522.7964604-CDS-Ecto-sp13_S_contig10317:2747..32591681462522.7964604-CDS-Ecto-sp13_S_contig10317:2747..3259Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10317 2748..3259 +
1681462522.8068902-CDS-Ecto-sp13_S_contig10317:3573..36311681462522.8068902-CDS-Ecto-sp13_S_contig10317:3573..3631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10317 3574..3631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10317.315.1

>prot_Ecto-sp13_S_contig10317.315.1 ID=prot_Ecto-sp13_S_contig10317.315.1|Name=mRNA_Ecto-sp13_S_contig10317.315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=388bp
RAGTREESASPELVGVTREQRKREGSGASVSSLRSPSTPSGRRASGGPLS
RLLPAPTGSIGSEGGDVSTGSDNKSVKAEVLAEEQPASTAAAPSGGSGNL
AKKKKTFMEKFGDMLEAAAETAIPAAPGGGGVGYGSRAATARPREWEQWD
AAPLLEFMKEEARTAADKARKEEIARTGGDKDKLVALVKAWYTPFLSQAE
FVRQKEALTTQHVGMVDDSGRCVSAKSSSVASPVRGRRGGEGGPPSAAIG
SADISPGLFLSRRSRAKNASPTSTKPGDPLRLSRAPEESGLELGGGDLDT
ASARSAAAGAPAGEGSGGISRAVVVGYVVDGGGGWGKVGSASCRDIHYLV
EVEASSAEGGTRSWACYKRFSDFRALWTGMSRRYPRME
back to top

mRNA from alignment at Ecto-sp13_S_contig10317:456..3632+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10317.315.1 ID=mRNA_Ecto-sp13_S_contig10317.315.1|Name=mRNA_Ecto-sp13_S_contig10317.315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10317:456..3632+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCGGGGACGCGCGAGGAGAGCGCTAGCCCCGAGCTCGTGGGGGTTAC
TAGAGAGCAGAGGAAGCGGGAGGGGAGCGGGGCCAGCGTCAGCAGCTTGC
GCTCGCCCAGCACGCCGTCTGGCCGGAGGGCCAGCGGGGGGCCGCTTTCC
AGGTGTGTGTTGGCTGTGGTGTTTTTTTTTCTGTTTTATGCCTTTGCGTG
GCCATGGGGGGAGGATGGTCGTTTTCTGGGTGATCGCGACCATAGAGACT
TTTGATGGCAGAACAAAGCACAGACGGCCAGAACAGCTTTTGATGTGACC
ACAACACAACAACAACAACAACAACAAGAAGCAATATCACATCAATAGCA
GTGACAACAACAATATCGACGATACTCAGGTTATTGCCCGCGCCGACGGG
CAGCATTGGCTCGGAAGGGGGCGACGTTTCCACAGGCAGCGACAACAAGT
CTGTCAAGGCCGAGGTGTTGGCAGAAGAGCAGCCAGCATCGACGGCGGCG
GCACCATCCGGTGGCTCCGGTAACCTTGCCAAGAAGAAGAAGGTGCCATC
CATGTGTGTTTGCGGTGCGGTAGCGTGTGGTTGTGGGGTGACGTATCCCA
GTAGTTGCAAGCTGGTTGCGCTGTTGCTGTCATGGCCCATGTGCGAAGGT
AGTGTTGTCATTCGCCCGTCCATCCAAAACTATCTTTCTGCGCGTGCATA
CGTAGATTAATCGCTCCCATGTCTCCCTTGCACCGAACTCTCAAAGCGTG
TCTGACCATCCCAGACCGTATGCTACACTACACGTACAATCGTAGATTTA
TCGGTCCCGTATCTCCCTTGCATCCAACACGTACCTTTTTTTTTTGTAAT
TTGTGCACGGCCTACATACATCGTGACCCTGTAAGGGCACACCACCTGCT
TTTTTTTGTTGTTATTGTTTACGTCTGGTTGTGATACATCCCCTACTCTC
GTCGACGGCTGTGCATGTCCCTCGCGGTTGCAACAAAACAACAATGACAA
CTGCAGACGTTCATGGAAAAGTTCGGCGACATGCTCGAGGCTGCCGCGGA
GACCGCCATACCCGCCGCCCCTGGCGGCGGGGGAGTAGGGTACGGCAGCC
GCGCTGCTACCGCCAGGCCCCGTGAGTGGGAGCAGTGGGACGCCGCTCCG
CTTCTAGAGTTCATGAAGGAAGAGGTACGATGCCAGCAGTAGGAGTCGCC
ACCACTAGCGGTAGCGTTGGGGGTTAGAGAACCGGGGTGGAAGTTAAGAA
GTTGAGGTTACAGACGCAGGTGAGTTAAAGAGGTTGACTCTCGTTTGCTG
CTCTTGCTACCCCTGTTGCTGTTGCTGCCGTTGCTGCTCTTGTTGGTGAG
GTTGCTGGCAGCGTGGGTGATGTCCATGTTGTTGGTGCTCATGGTGAGGT
TGACGATTGCTGTTCTTCTCTCGTTGTCGTTGTTGCCATTATCGTCGCAG
GCTCGAACGGCGGCGGACAAGGCTCGCAAGGAGGAAATCGCTCGCACCGG
TGGAGACAAGGACAAGCTTGTAGCCTTGGTCAAGGCGTGGTACACGCCCT
TCCTGTCTCAGGTACTGCTGCTGCTGCTGCTGCTGCTGTTTGGTTGACTG
AAACCCGCCATCGACTTGATGTTGTAGGAGTACAATACCTCAGTACCTGC
TACTGGTTCGTTGGAGCACAGGAAGGGAACTTCTGTAGTTGTCGACTGAG
AATGTTTTTCGCTTTTCAGATGCTTTTCTTCCCATCACCTCAGCCATGGG
GTAATCCTTCATGTTCTTTTGTTCAAGATGAGTTGGGTAACTTCTCTTTG
GTTGTTGCAAGGAAACGCTCTGTGGTGTTTTCGTCAAGACTTATACAACA
TCATACACGGTTGTTTTGTTCGGGAAAATGCCGTGACGGTGTTTCGTGCT
CCTTGTGCTGTGGTACCAATGCTGGTCGACCTTGTTGTTCGACGATGGAG
AAGAGTCAACTTGACTAGAAGTGCTGGTTTTGTTTCAATCCTCTGGTTTT
TATAGGGAGATGCTCGACATTTCTGATAAGAGTTGACCCCGCCACAGTAA
AAGGTCACGTCTCAAAACCCGCGATAGTTATGGCTGCTATTATTGAACGC
CGCGGTAGTTGCAAGGCCGTAGATAGCTCTACCCTTTTATTTTTGTGCGA
GTTGTACTGCCCTGTGCTGTCCGGCCGTTGTTTTTTTTTCGGCTTTTGTG
ACCTCCCGAAGTCGTTTCTTTCTTTTCTCTCGAGTCATTCCCGTCTAAGC
AGTACAACCCCGCCCCGCCCTGTGCGTTACGACACGAAACAGGCGGAGTT
TGTCCGGCAAAAGGAAGCCCTGACCACCCAGCACGTGGGGATGGTGGACG
ATTCGGGTCGGTGCGTATCGGCGAAATCATCGTCGGTAGCGTCCCCCGTC
AGAGGAAGGAGAGGGGGGGAAGGCGGACCACCTTCCGCGGCCATCGGCTC
CGCCGACATTTCCCCAGGGCTCTTTCTCTCGAGGCGCTCCCGTGCCAAGA
ACGCCTCTCCAACAAGCACGAAACCCGGGGACCCTTTGCGGCTGTCCCGT
GCCCCCGAGGAGAGCGGGCTTGAGCTCGGCGGAGGCGATTTGGACACCGC
CTCTGCTAGGAGTGCCGCCGCCGGGGCACCGGCGGGGGAGGGGAGCGGGG
GTATTTCCCGCGCGGTCGTGGTCGGGTACGTGGTCGATGGAGGAGGGGGC
TGGGGGAAGGTTGGTTCTGCCTCTTGTCGGGACATTCACTACCTGGTGGA
GGTGGAGGCCTCTTCGGCCGAGGGAGGGACCCGCTCTTGGGCGTGCTACA
AGCGGTAAGTGGTATGGGGGGGGGGGTAGGGACTTGTAGGATGTTTGGCC
ATTTTAATGTGATCGACGGTGGGCAAGGAGGGACGTTGTGCGAGCGTGTG
GCTGCGTCCTGTTGTCTCGTGTCGCGGCTAAAGGGCTTTTGCCACCATTC
TCAGCAGCGATATCGACAAAATCGACAACCGCTGTCGTCGTTCTGCGAAC
ACCCCCCCCCGCTGCTGCCACCGCCTTCCTGTGTTTGTAGCAACGCTAAT
GTGTTAGTACCGTTTCACTTTTCTGCTGCCGTGTCCCCTCCCCTTGTGCT
GGACCATGATCACTTAAGTTTCTCCGACTTTCGAGCCTTGTGGACTGGGA
TGTCGCGACGGTATCCCCGCATGGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10317:456..3632+

>mRNA_Ecto-sp13_S_contig10317.315.1 ID=mRNA_Ecto-sp13_S_contig10317.315.1|Name=mRNA_Ecto-sp13_S_contig10317.315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1164bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10317:456..3632+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGAGCGGGGACGCGCGAGGAGAGCGCTAGCCCCGAGCTCGTGGGGGTTAC
TAGAGAGCAGAGGAAGCGGGAGGGGAGCGGGGCCAGCGTCAGCAGCTTGC
GCTCGCCCAGCACGCCGTCTGGCCGGAGGGCCAGCGGGGGGCCGCTTTCC
AGGTTATTGCCCGCGCCGACGGGCAGCATTGGCTCGGAAGGGGGCGACGT
TTCCACAGGCAGCGACAACAAGTCTGTCAAGGCCGAGGTGTTGGCAGAAG
AGCAGCCAGCATCGACGGCGGCGGCACCATCCGGTGGCTCCGGTAACCTT
GCCAAGAAGAAGAAGACGTTCATGGAAAAGTTCGGCGACATGCTCGAGGC
TGCCGCGGAGACCGCCATACCCGCCGCCCCTGGCGGCGGGGGAGTAGGGT
ACGGCAGCCGCGCTGCTACCGCCAGGCCCCGTGAGTGGGAGCAGTGGGAC
GCCGCTCCGCTTCTAGAGTTCATGAAGGAAGAGGCTCGAACGGCGGCGGA
CAAGGCTCGCAAGGAGGAAATCGCTCGCACCGGTGGAGACAAGGACAAGC
TTGTAGCCTTGGTCAAGGCGTGGTACACGCCCTTCCTGTCTCAGGCGGAG
TTTGTCCGGCAAAAGGAAGCCCTGACCACCCAGCACGTGGGGATGGTGGA
CGATTCGGGTCGGTGCGTATCGGCGAAATCATCGTCGGTAGCGTCCCCCG
TCAGAGGAAGGAGAGGGGGGGAAGGCGGACCACCTTCCGCGGCCATCGGC
TCCGCCGACATTTCCCCAGGGCTCTTTCTCTCGAGGCGCTCCCGTGCCAA
GAACGCCTCTCCAACAAGCACGAAACCCGGGGACCCTTTGCGGCTGTCCC
GTGCCCCCGAGGAGAGCGGGCTTGAGCTCGGCGGAGGCGATTTGGACACC
GCCTCTGCTAGGAGTGCCGCCGCCGGGGCACCGGCGGGGGAGGGGAGCGG
GGGTATTTCCCGCGCGGTCGTGGTCGGGTACGTGGTCGATGGAGGAGGGG
GCTGGGGGAAGGTTGGTTCTGCCTCTTGTCGGGACATTCACTACCTGGTG
GAGGTGGAGGCCTCTTCGGCCGAGGGAGGGACCCGCTCTTGGGCGTGCTA
CAAGCGTTTCTCCGACTTTCGAGCCTTGTGGACTGGGATGTCGCGACGGT
ATCCCCGCATGGAG
back to top