mRNA_Ecto-sp13_S_contig1403.3144.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1403.3144.1 vs. uniprot
Match: D7FK46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK46_ECTSI) HSP 1 Score: 1103 bits (2853), Expect = 0.000e+0 Identity = 536/555 (96.58%), Postives = 542/555 (97.66%), Query Frame = 1
Query: 226 MCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGCSRVNNRTDASRHSARHLWYWEQRYSPEASRSLYWQLYKSLAAYRMALREEKRIGCGFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAAKTFYACDGRSWPPPSSWWQPECATIGFEESVLFRHLHASEIPYYFYPLFDFVITRGVIGGVCKLGFIVYSEVCSILGLWNALQPPFSRDDCLEALAEYSDLRCRTLFPARGMEDGRRVDAILDPEPRAWEALLDSSPLLEPIPAVAAPGPLGRATEGDSSDASIYTSVAKAADVDSARLKLVLLRDALQAPSPLEPNYDMALREEAKERSLSDRWGGWKTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELVLSVKCFVSRIIGDTQVGSGDTNQSSCNGVRSLDLVMIDVSLHTEELGICTADGSLGLSASEHVSRFFDNPAAHCVGYGRLGSERLSGGSL 1890
MCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGC+ VNNRTDASRHSARHLWYWEQRYSPEASRSLYWQLYKSLAAYRMALREEKRIG GFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSA KTFYACDGRSWPPPSSWWQPECATIGFEESVLFRHLHASEIPY FYPLFDF+ITRGVIGGVCKLGFIVYSEVCS+LGLWNALQPPFSRD CLEALAEYSDLRCRTLFPARGMED RRVDAILDPEPRAWEALLDSSPLLEPIPAVAAPGPLGRATEGDSSDASIYTSVAKA DVDSARLKLVLLRDALQAPSPLEP+Y+MALREEAKERSL DRWGGWKTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELV SVKCFVSRIIG+TQVG GDTNQSSCNGVRSLDLVMIDVSLHTEELGICTADGSLGLSASE VSRFFDNPAAHC GYGRL SERLSGGSL
Sbjct: 1 MCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGCAGVNNRTDASRHSARHLWYWEQRYSPEASRSLYWQLYKSLAAYRMALREEKRIGSGFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAVKTFYACDGRSWPPPSSWWQPECATIGFEESVLFRHLHASEIPYRFYPLFDFIITRGVIGGVCKLGFIVYSEVCSLLGLWNALQPPFSRDHCLEALAEYSDLRCRTLFPARGMEDERRVDAILDPEPRAWEALLDSSPLLEPIPAVAAPGPLGRATEGDSSDASIYTSVAKAEDVDSARLKLVLLRDALQAPSPLEPHYEMALREEAKERSLLDRWGGWKTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELVQSVKCFVSRIIGETQVGGGDTNQSSCNGVRSLDLVMIDVSLHTEELGICTADGSLGLSASEQVSRFFDNPAAHCAGYGRLDSERLSGGSL 555
BLAST of mRNA_Ecto-sp13_S_contig1403.3144.1 vs. uniprot
Match: D7G5E2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5E2_ECTSI) HSP 1 Score: 260 bits (665), Expect = 2.640e-71 Identity = 207/666 (31.08%), Postives = 287/666 (43.09%), Query Frame = 1
Query: 214 CRVAMCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGCSRV----------------------------------NNRTDASR-HSARHLWYWEQR--YSPEASRSLYWQLYKSLAAYRMAL-REEKRIGCGFT----------YDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAAKTFYACD---GRSWPPPSSWWQPECATIG-----------------------------------------------------FEESVLFRHLHASEIPYYFYPLFDFVIT-------------RGVIGGVCKLGFIVYSEVCSILGLWNALQPPFSRDDCLEALAEYSDLRCRTLFPARGMEDGRRVDA---ILDPEPRAWEALLDSSPLLEPIPAVAAPGPLGRATEGDSSDASIYTSVAKAADVDSAR--LKLVLLRDAL-----QAPSPLEPNYDMALRE-----EAKERSLSDRWGG--------------WKTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELVLSVKCFVSRIIGDTQVGSGDTNQ-----SSCNGVRSLDLVMIDVSLHTEEL 1758
C VA+ SG +RSFV P +HRS R +++E+IKA+GC VDVF Y + D + +Q + E N +E + L PT+L+WHQ+QAGIIPN C +NR++ R H+++ R +S + R YWQLY+SLAAYR+A+ RE+++ T YDW++ R DVAW + LP R+FSR VWF WPMS +FALVPR FSDRFFSA + F+ACD G SWPP +WWQP+C G F ES+++RHLHAS +PY YP+F++ G C+ Y C +LG ++ ++C AL+E+S L CRT G + + LDP+ W P +V G TE D+ D + + D R L LRDA+ + A E E R+L GG +T+ W +HS GC L E +PG +PH++ + + +REL L+ KC R I S + C RSL+LVMIDVSLH+ E+
Sbjct: 39 CAVAVSISGDVRSFVDPVLHRSFRRHVVEAIKAEGCTVDVFVYASLGDEDLLVEQ--DAETIRN---IEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEAQPSSFAESSVPNARPTGGNVGGDNRSNQPRGHASKEPSKPPSREQFSTRSER-FYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKKSLPSFRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEHGQENGNSSGNVHSGGNLHHSPRSGPAGGGGGFELRGSDDGSIFHDNRGGGRGEGFGESIVYRHLHASGVPYRPYPMFEYYTVPPYVRDGDADGDAAGDTRSGCETSTPDYFTGCVLLGTVGLFSQAYTSEECATALSEWSSLHCRTSTHLEATGPGHQTERGSENLDPDLTTW-----------PRSSV---GVYPDETETDNGDVLGAAEADRVQEEDLRRAWFNLAALRDAVIVAADDGSEEVMHGSSNAGEEDTPSGETSRRNLGKEDGGDHDAAPKPSGSSPTRQTNRSWSVHSQGGCRLNE--YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFIEGATAWSSVNEDFGFDATVCASSRSLELVMIDVSLHSAEV 682
BLAST of mRNA_Ecto-sp13_S_contig1403.3144.1 vs. uniprot
Match: A0A6H5KVJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ6_9PHAE) HSP 1 Score: 245 bits (625), Expect = 1.420e-68 Identity = 193/624 (30.93%), Postives = 272/624 (43.59%), Query Frame = 1
Query: 214 CRVAMCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGCSRV----------------------------------NNRTDASR-HSARHLWY--WEQRYSPEASRSLYWQLYKSLAAYRMAL-REEKRIGCGFT----------YDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAAKTFYACD---GRSWPPPSSWWQPECATIG-----------------------------------------------------FEESVLFRHLHASEIPYYFYPLFDF------VITRGVIGGV-------CKLGFIVYSEVCSILGLWNALQPPFSRDDCLEALAEYSDLRCRTLFPARGMEDGRRVDAI---LDPEPRAWEALLDSSPLLEPIPAVAAPGPLGRATEGDSSDASIYTSVAKAADVDSARLKLVLLRDA--LQAPSPLEP---------NYDMALREEAKERSLSDRWGGW-------------KTHPLWWIHSIMGCPLAEPQHPGPSPHVVLYYTMGEPLVRELVLSVKCFVSRII 1653
C VA+ SG +RSFV P VH S + +++E+IKA+GC VDVF Y + D + +Q + E N +E + L PT+L+WHQ+QAGIIPN C +NR++ R H ++ +++S + R YWQLY+SLAAYR+A+ RE+++ T YDW++ R DVAW +P LR+FSR VWF WPMS +FALVPR FSDRFFSA + F+ACD G SWPP +WWQP+C G F ES+++RHLHAS +PY YP+F++ V V GG C+ Y C +LG P ++ + C AL+E+S L CR GR+ + L+P +AW P +V + GD + V + D+ A LV LRDA L A E D +RE ++ D G +T+ W +HS GC L E +PG +PH++ + + +REL L+ KC R +
Sbjct: 38 CAVAVSISGDVRSFVDPVVHLSFQRHVVEAIKAEGCTVDVFVYASLGDEDLLEEQ--DAETIRN---IEATMEFLSPTQLVWHQEQAGIIPNSCRPTATTPTTGGGDEARPSSFASSNAANAKPKGGNVGGDNRSNQPRGHVSKEPSKPPGREQFSTRSER-FYWQLYESLAAYRLAVQREDEKEKEAATIPTSSPASSKYDWIVTTRFDVAWKNSVPSLRAFSRDVVWFAAKSWPMSTNFALVPRAFSDRFFSAVEAFHACDDGNGPSWPPGEAWWQPDCGEDGQENENGSGSVHSGGNLHHSPRGGPAGGGGDFDLRDWDDGSIFHDNRGGSRGEGFGESIVYRHLHASGVPYRPYPMFEYYAVPPYVRDGDVDGGAARDTRSGCEASTSDYLTGCVLLGTVGLFSPAYTSEACATALSEWSSLHCRASTQPEATSTGRQTERASKNLNPYLKAW-----------PRSSVGVSSGEAKTHRGDVFGTAEEDRVQEE-DLKRAWSNLVALRDAVILAADDDSEEATHGSSNAGEDDTPIREASRRHLGKDDGGDHDAAPKPSNSSPTRQTNRSWSVHSQWGCRLNE--YPGRAPHIIRHSSTDSHRMRELALATKCLAHRFM 641
BLAST of mRNA_Ecto-sp13_S_contig1403.3144.1 vs. uniprot
Match: D8LCA5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCA5_ECTSI) HSP 1 Score: 155 bits (391), Expect = 1.910e-36 Identity = 109/342 (31.87%), Postives = 153/342 (44.74%), Query Frame = 1
Query: 175 PEVHTDPDGTGVSCRVAMCFSGAIRSFVHPAVHRSIRTNLIESIKADGCEVDVFAYVTREDTVVKAKQVENPE-------FTPNSSDVEVALAVLEPTRLLWHQDQAGIIPNGCSRVNNRTDASRHSARHLWYWEQRYSPEASRSLYWQLYKSLAAYRMALREEKRIGCGFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAAKTFYACDGRSWPPPSSWWQPECATIGFEESVLFRHLHASEIPYYFYPLFDFVITRGVIGGVCKLGFIVYSEVCSILGLWNALQPPFSR------DDCLEALAEYSDLRCRTLFP 1161
P D SCR A+ +SG +RSFV P VH S + NLIE ++ D C VDVF +++ ED V + + + E TP ++VE A+ +L P + +HQ+QAG IPNGC + YWQLYK A +RM EE G +Y WVIR RLD+AW P+PPL F V+ G +++P+SD F L PR F+ F A Y C S + G L R +P+ +Y F I R GGVC++ + C +L + P + CL+ + + C +FP
Sbjct: 24 PAFGADAASGTESCRCAVLYSGHVRSFVQPRVHLSHKKNLIEQLEID-CHVDVFMHISVEDEVPRRYRKGDFEDALAFTPHTPQETEVEHAVGLLNPLSIEYHQEQAGYIPNGCETG------------------------CEINAYWQLYKMKAVFRMM--EEHEATTGLSYTWVIRSRLDIAWMLPVPPLSRFPPTRVYAGHNFFPLSDQFLLSPRMFAQSIFGAVSLCYDCKALEAHRES---KVPAQVEGLLRVALRRGHGHGAVPFGYYE-FPVAIVRSNEGGVCEV-LHPHKLACEMLRASGLMGPLTAATGGGQPSSCLDMMNRWHRHACVEMFP 333
BLAST of mRNA_Ecto-sp13_S_contig1403.3144.1 vs. uniprot
Match: A0A813GBV9_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813GBV9_POLGL) HSP 1 Score: 60.5 bits (145), Expect = 5.920e-6 Identity = 68/231 (29.44%), Postives = 104/231 (45.02%), Query Frame = 1
Query: 175 PEVHTDPDGTGVSCRVAMCFSGAIRSFVHPAVHRSIRTNLIESIKADG----CEVDVFAYVTREDTVVKAKQVENPEFTPNSSDVEVALA--VLEPTRL--LWHQDQAGIIPNGCSRVNNRTDASRHSARHLWYWEQRYSPEASRSLYWQLYKSLAAYRMALREEKRIGCGFTYDWVIRGRLDVAWARPLPPLRSFSRQAVWFGRHYWPMSDHFALVPRKFSDRFFSAAKT 843
P+V P G + A CF G RS + P VH S+R NLI++ A C + A V T V+ ++T SS VE+A A VL+P R+ L H++Q +P D L W+Q Q+ K+ A ++M EE R+GC ++Y +++R D+ W R P +F +A W G + D F ++ RK ++ +F T
Sbjct: 102 PQVELLPSCPGPAA--AFCFFGQPRSLMLPIVHVSVRRNLIDAFGAPHSDTFCLFKLAAPVENNGTAVR-------KYTA-SSKVELAAAEEVLQPLRIRYLTHEEQK--LPE--------FDPPGKGMCELRIWQQ------------QVAKA-ACFKMIQEEEGRLGCRYSYVFLVRP--DLLWVRRFPKFTNFENEA-WEGATI--VRDLFQMLTRKTAEAYFKVPLT 294 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1403.3144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1403.3144.1 >prot_Ecto-sp13_S_contig1403.3144.1 ID=prot_Ecto-sp13_S_contig1403.3144.1|Name=mRNA_Ecto-sp13_S_contig1403.3144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=631bp MLRWDGKPRSRGKAPTRGGFVATLAYVLGAAGLSSAARAEGTTAINHSDNback to top mRNA from alignment at Ecto-sp13_S_contig1403:11492..16932- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1403.3144.1 ID=mRNA_Ecto-sp13_S_contig1403.3144.1|Name=mRNA_Ecto-sp13_S_contig1403.3144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1403:11492..16932- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1403:11492..16932- >mRNA_Ecto-sp13_S_contig1403.3144.1 ID=mRNA_Ecto-sp13_S_contig1403.3144.1|Name=mRNA_Ecto-sp13_S_contig1403.3144.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1893bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1403:11492..16932- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |