mRNA_Ecto-sp13_S_contig1403.3143.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1403.3143.1
Unique NamemRNA_Ecto-sp13_S_contig1403.3143.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1403.3143.1 vs. uniprot
Match: A0A6H5JJ24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ24_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.970e-32
Identity = 62/71 (87.32%), Postives = 65/71 (91.55%), Query Frame = -2 
Query:    3 MLPSLPAVSKFIGAVFLVGTWHGNVSSTS-VEGGVTEAILSPVSAPAKNEAITSEGWTTLILDSGTKRQTV 212
            MLPSLPA SKFI AVFL+GTWHGNVSSTS VEGGVTEA LSPVSAPA+NE+I SEGWTTLILD GTKRQTV
Sbjct:    1 MLPSLPAASKFIIAVFLMGTWHGNVSSTSSVEGGVTEATLSPVSAPARNESIASEGWTTLILDGGTKRQTV 71
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BLAST of mRNA_Ecto-sp13_S_contig1403.3143.1 vs. uniprot
Match: D7FK28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK28_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 7.800e-30
Identity = 62/70 (88.57%), Postives = 63/70 (90.00%), Query Frame = -2 
Query:    3 MLPSLPAVSKFIGAVFLVGTWHGNVSSTSVEGGVTEAILSPVSAPAKNEAITSEGWTTLILDSGTKRQTV 212
            MLPSLPA SKF  AV LVGTWHGNVSSTSVEGGVTEA LSPVSAPA+NEAI SEGWTTLILD GTKRQTV
Sbjct:    1 MLPSLPAASKFTLAVLLVGTWHGNVSSTSVEGGVTEATLSPVSAPARNEAIASEGWTTLILDGGTKRQTV 70
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1403.3143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JJ24_9PHAE4.970e-3287.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK28_ECTSI7.800e-3088.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1403contigEcto-sp13_S_contig1403:9748..10104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size357
Hectar predicted targeting categoryother localisation
Exons1
Cds size357
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.3194852-CDS-Ecto-sp13_S_contig1403:9747..101041681462749.3194852-CDS-Ecto-sp13_S_contig1403:9747..10104Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1403 9748..10104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1403.3143.1prot_Ecto-sp13_S_contig1403.3143.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1403 9748..10104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1403.3143.1

>prot_Ecto-sp13_S_contig1403.3143.1 ID=prot_Ecto-sp13_S_contig1403.3143.1|Name=mRNA_Ecto-sp13_S_contig1403.3143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=119bp
MTVCLLVPLSRINVVHPSDVIASFFAGADTGERIASVTPPSTDVELTLPC
QVPTRKTAPMNFDTAGRDGNIDSPRRALHPSNVAQPKMLAEIGIRALNCL
YRTGACPIDRDWQTINLA*
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mRNA from alignment at Ecto-sp13_S_contig1403:9748..10104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1403.3143.1 ID=mRNA_Ecto-sp13_S_contig1403.3143.1|Name=mRNA_Ecto-sp13_S_contig1403.3143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1403:9748..10104+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGTCTGCCTTTTGGTACCACTATCAAGAATCAACGTTGTCCACCC
CTCCGACGTGATTGCCTCGTTTTTTGCTGGTGCTGACACGGGTGAAAGGA
TAGCTTCTGTCACCCCACCCTCCACTGATGTAGAGCTCACGTTACCATGC
CAGGTTCCCACAAGGAAGACGGCTCCTATGAATTTCGATACGGCGGGTAG
AGATGGCAACATCGACAGCCCTCGTCGTGCACTCCACCCGTCGAATGTGG
CACAACCGAAAATGTTGGCAGAAATTGGAATACGTGCGCTCAACTGCCTC
TACCGGACAGGGGCTTGTCCCATAGATCGTGACTGGCAAACGATTAATCT
GGCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1403:9748..10104+

>mRNA_Ecto-sp13_S_contig1403.3143.1 ID=mRNA_Ecto-sp13_S_contig1403.3143.1|Name=mRNA_Ecto-sp13_S_contig1403.3143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=357bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1403:9748..10104+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGTCTGCCTTTTGGTACCACTATCAAGAATCAACGTTGTCCACCC
CTCCGACGTGATTGCCTCGTTTTTTGCTGGTGCTGACACGGGTGAAAGGA
TAGCTTCTGTCACCCCACCCTCCACTGATGTAGAGCTCACGTTACCATGC
CAGGTTCCCACAAGGAAGACGGCTCCTATGAATTTCGATACGGCGGGTAG
AGATGGCAACATCGACAGCCCTCGTCGTGCACTCCACCCGTCGAATGTGG
CACAACCGAAAATGTTGGCAGAAATTGGAATACGTGCGCTCAACTGCCTC
TACCGGACAGGGGCTTGTCCCATAGATCGTGACTGGCAAACGATTAATCT
GGCGTAG
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