prot_Ecto-sp13_S_contig14028.3141.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig14028.3141.1
Unique Nameprot_Ecto-sp13_S_contig14028.3141.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length134
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D8LDU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU3_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 3.080e-17
Identity = 49/103 (47.57%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:    1 MDGGSHGWGAQHCERWALSACVPGIPGVDRGCRRCSEGPGEAQGADVPVR----FPHQRLDSARPPGRSPRQVKPMKDFVATTNDLAAFAAKWAKGGRCRAPF 99
            M+G  + WGA+ CER AL ACVPGI GVDR  R CS  PG+A      V          +   R  G   +  KP++DFV  TN+LA FAA+ AKGG+CRA F
Sbjct:    1 MEGDGYSWGARRCERRALGACVPGIQGVDRDRRGCSGIPGQATELQSLVSRCAFLTTVLIQHGRAVGSLAQVQKPIQDFVVMTNELAGFAARRAKGGKCRAFF 103
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.860e-7
Identity = 27/30 (90.00%), Postives = 28/30 (93.33%), Query Frame = 0 
Query:   70 KPMKDFVATTNDLAAFAAKWAKGGRCRAPF 99
            KPMKDFVATTNDLAAFAA WAKGG+CRA F
Sbjct:  135 KPMKDFVATTNDLAAFAATWAKGGKCRALF 164
[Close]
BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 1.410e-5
Identity = 23/30 (76.67%), Postives = 28/30 (93.33%), Query Frame = 0 
Query:   70 KPMKDFVATTNDLAAFAAKWAKGGRCRAPF 99
            KP++DFVATTN+LA FAA+WAKGG+CRA F
Sbjct:  163 KPIQDFVATTNELAGFAARWAKGGKCRAFF 192
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LDU3_ECTSI3.080e-1747.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6W2_ECTSI1.860e-790.00NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI1.410e-576.67NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14028contigEcto-sp13_S_contig14028:3450..3851 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14028.3141.1mRNA_Ecto-sp13_S_contig14028.3141.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig14028 2306..3851 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig14028.3141.1 ID=prot_Ecto-sp13_S_contig14028.3141.1|Name=mRNA_Ecto-sp13_S_contig14028.3141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MDGGSHGWGAQHCERWALSACVPGIPGVDRGCRRCSEGPGEAQGADVPVR
FPHQRLDSARPPGRSPRQVKPMKDFVATTNDLAAFAAKWAKGGRCRAPFA
TAATGALSPTSRRVCAPSATTSLWWTGWSTTSFC
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