mRNA_Ecto-sp13_S_contig14028.3141.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14028.3141.1
Unique NamemRNA_Ecto-sp13_S_contig14028.3141.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D7FUT5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUT5_ECTSI)

HSP 1 Score: 207 bits (526), Expect = 1.480e-64
Identity = 105/132 (79.55%), Postives = 117/132 (88.64%), Query Frame = 1 
Query:  118 MQRAPASGGQAGLAPAVEPTAAERLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPLAR 513
            MQRAPA+GGQ  +  AVEPTAAERLD+VGKL+AEK+PWPAFL +GARA E WEACPTPVQEALAWMA  TVGVL+TASVGPLVPVCQAF+ LIEAAE AA  Q+KLKGL+SRCAFLT+VLIQHDR VG LA+
Sbjct:    1 MQRAPANGGQEDVQAAVEPTAAERLDHVGKLLAEKRPWPAFLQIGARANEEWEACPTPVQEALAWMATTTVGVLDTASVGPLVPVCQAFKALIEAAERAADGQDKLKGLISRCAFLTTVLIQHDRAVGRLAQ 132
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D7G6W2_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6W2_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 1.200e-63
Identity = 112/132 (84.85%), Postives = 123/132 (93.18%), Query Frame = 1 
Query:  118 MQRAPASGGQAGLAPAVEPTAAERLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPLAR 513
            MQRAP SGGQAGL  AVEPTAAERLD+VGKL+AEKKPWPAFLH+GARATE WEACPTPVQEAL WMA ATVGVL+ ASVGPL PVCQAF+GLIEAAEGAA++Q+KLKGL+SRCAFLT+VLIQHDR VGPLA+
Sbjct:    1 MQRAPTSGGQAGLVAAVEPTAAERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALVWMARATVGVLDIASVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCAFLTTVLIQHDRAVGPLAQ 132
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: A0A6H5KMV3_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMV3_9PHAE)

HSP 1 Score: 205 bits (522), Expect = 7.640e-60
Identity = 102/124 (82.26%), Postives = 114/124 (91.94%), Query Frame = 1 
Query:  142 GQAGLAPAVEPTAAERLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPLAR 513
            GQAGL  AVEPTA ERLD+VG+L+AEKKPWPAFLHLGARAT+ WEACPTPVQEALAWMA ATVGVL+  SVGPL PVCQAF+GLIEAAEGAA++Q+KLKGL+SRC FLT+VLIQHDR VGPLA+
Sbjct:   14 GQAGLVAAVEPTAVERLDHVGQLLAEKKPWPAFLHLGARATKEWEACPTPVQEALAWMATATVGVLDMTSVGPLEPVCQAFKGLIEAAEGAAESQDKLKGLISRCPFLTTVLIQHDRAVGPLAQ 137
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D7G722_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G722_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 8.210e-57
Identity = 104/134 (77.61%), Postives = 117/134 (87.31%), Query Frame = 1 
Query:  118 MQRAPASGGQAGLAPA--VEPTAAERLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPLAR 513
            MQRAPASGGQAGLA A  VEPT  ERLD+VGKL+AEKKPWPAFLH+GARATE WEACPTPVQEALAWM  + VGVL  ASVGPLVPVC+AF+ LIEAAEGAA+ Q+KL+ L+S+CAFL +VLIQH R VGPLA+
Sbjct:   44 MQRAPASGGQAGLAAAAVVEPTTVERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQ 177
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D7G720_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G720_ECTSI)

HSP 1 Score: 203 bits (516), Expect = 2.910e-56
Identity = 105/142 (73.94%), Postives = 119/142 (83.80%), Query Frame = 1 
Query:   94 LRQ*TAAAMQRAPASGGQAGLAPA--VEPTAAERLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPLAR 513
            +R  T   MQRAPASG QAGLA A  VEPT  ERLD+VGKL+AEKKPWPAFLH+GARATE WEACPTPVQEALAWM  + VGVL  ASVGPLVPVC+AF+ LIEAAEGAA+ Q+KL+ L+S+CAFL +VLIQH R VGPLA+
Sbjct:   19 VRDGTGGEMQRAPASGDQAGLAAAAVVEPTTVERLDHVGKLLAEKKPWPAFLHIGARATEEWEACPTPVQEALAWMTTSAVGVLGVASVGPLVPVCEAFKALIEAAEGAAECQDKLQSLVSQCAFLATVLIQHGRAVGPLAQ 160
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D8LGG5_ECTSI (NB-ARC and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 2.080e-49
Identity = 94/135 (69.63%), Postives = 110/135 (81.48%), Query Frame = 1 
Query:  118 MQRAPASGGQAGLA---PAVEPTAAERLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPLAR 513
            MQR PAS  QAGLA    AVEPT  ERL++VGKL+AEK+PWPAFLH+GARATE WEACPT  QEAL WM  A VGVL+ ASVGPLVPVCQA + LIEAAEGAA+ ++K++ L+S+CAFL +VLIQH R VG LA+
Sbjct:    1 MQRVPASASQAGLAVATTAVEPTTVERLEHVGKLLAEKRPWPAFLHIGARATEEWEACPTLAQEALTWMTTAAVGVLDVASVGPLVPVCQALKALIEAAEGAAECEDKVQSLVSQCAFLATVLIQHGRAVGALAQ 135
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: D7FLM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM4_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 2.010e-48
Identity = 83/106 (78.30%), Postives = 95/106 (89.62%), Query Frame = 1 
Query:  118 MQRAPASGGQAGLAPAVEPTAAERLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKL 435
            MQRAP  GGQAGLA AVEPT+A+RLD+VGKL+AEKKPWPAFLH+ ARATE WEACPTPVQEAL WMA ATVG+L+TASVGPLVPVCQ F+ LIEAAE A ++++KL
Sbjct:    1 MQRAPTIGGQAGLATAVEPTSADRLDHVGKLLAEKKPWPAFLHITARATEEWEACPTPVQEALVWMATATVGLLDTASVGPLVPVCQTFKTLIEAAEDAEESEDKL 106
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: A0A6H5KXS7_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXS7_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 7.500e-44
Identity = 80/109 (73.39%), Postives = 95/109 (87.16%), Query Frame = 1 
Query:  187 RLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPLAR 513
            RL+ VGKL+AEK+PWPAFLH+ ARATE WEACPT  QEAL W+A ATVGVL+ ASVGPLVPVC+AF+ LIEAAEGAA++Q KL+ L+S+CAFL +VLIQH R VGPLA+
Sbjct:   15 RLERVGKLLAEKRPWPAFLHIEARATEEWEACPTVAQEALTWIATATVGVLDVASVGPLVPVCEAFKALIEAAEGAAESQHKLQSLVSQCAFLATVLIQHGRAVGPLAQ 123
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: A0A6H5KK53_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK53_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 3.500e-30
Identity = 66/128 (51.56%), Postives = 81/128 (63.28%), Query Frame = 1 
Query:  124 RAPASGGQAGLAPAVEPTAAERLDNVGKLVAEKKPWPAFLHLGARATEGWEACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPL 507
            RAP+SG       A  PT  ERL+ V  L+A KKPWPAFL  G      W+ CP   ++AL WMA   VG+L+ ASVGPL PVCQAF  LIEAA+GA +  E L+ L++ CAFL  VLI+H + V  L
Sbjct:    4 RAPSSGSSVQAGAAAAPTTPERLEEVETLLAYKKPWPAFLCAGVDVHGEWDNCPEGARDALEWMASTAVGLLDVASVGPLTPVCQAFTALIEAAQGAMEVVENLRELVTWCAFLVGVLIEHGKQVDNL 131
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BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Match: A0A6H5KF10_9PHAE (NB-ARC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF10_9PHAE)

HSP 1 Score: 124 bits (310), Expect = 7.380e-29
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 1 
Query:  274 EACPTPVQEALAWMAGATVGVLNTASVGPLVPVCQAFQGLIEAAEGAAKAQEKLKGLMSRCAFLTSVLIQHDRLVGPLAR 513
            EACPTPVQEALAWMA ATVGVL+ ASVGPLVPVCQAF+ LIEAAEGAA++Q+KL+ L+ RC  LT+VLIQH R VGPLA+
Sbjct:  259 EACPTPVQEALAWMATATVGVLDIASVGPLVPVCQAFKALIEAAEGAAESQDKLQRLVPRCTMLTTVLIQHHRAVGPLAQ 338
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14028.3141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FUT5_ECTSI1.480e-6479.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G6W2_ECTSI1.200e-6384.85NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
A0A6H5KMV3_9PHAE7.640e-6082.26NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
D7G722_ECTSI8.210e-5777.61NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7G720_ECTSI2.910e-5673.94NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D8LGG5_ECTSI2.080e-4969.63NB-ARC and TPR repeat-containing protein n=1 Tax=E... [more]
D7FLM4_ECTSI2.010e-4878.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KXS7_9PHAE7.500e-4473.39NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KK53_9PHAE3.500e-3051.56NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5KF10_9PHAE7.380e-2977.50NB-ARC domain-containing protein n=1 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14028contigEcto-sp13_S_contig14028:2306..3851 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score86.3
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D8LDU3
Model size711
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
Ec32 ortholog descriptionNB-ARC and TPR repeat-containing protein - likely pseudogene
Ec32 orthologEc-01_011280.4
Cds size402
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.232598-UTR-Ecto-sp13_S_contig14028:2305..23851681462749.232598-UTR-Ecto-sp13_S_contig14028:2305..2385Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14028 2306..2385 +
1681462749.2445936-UTR-Ecto-sp13_S_contig14028:3057..31631681462749.2445936-UTR-Ecto-sp13_S_contig14028:3057..3163Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14028 3058..3163 +
1681462749.2541993-UTR-Ecto-sp13_S_contig14028:3327..34491681462749.2541993-UTR-Ecto-sp13_S_contig14028:3327..3449Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14028 3328..3449 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462749.2688236-CDS-Ecto-sp13_S_contig14028:3449..38511681462749.2688236-CDS-Ecto-sp13_S_contig14028:3449..3851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14028 3450..3851 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14028.3141.1prot_Ecto-sp13_S_contig14028.3141.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14028 3450..3851 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14028.3141.1

>prot_Ecto-sp13_S_contig14028.3141.1 ID=prot_Ecto-sp13_S_contig14028.3141.1|Name=mRNA_Ecto-sp13_S_contig14028.3141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MDGGSHGWGAQHCERWALSACVPGIPGVDRGCRRCSEGPGEAQGADVPVR
FPHQRLDSARPPGRSPRQVKPMKDFVATTNDLAAFAAKWAKGGRCRAPFA
TAATGALSPTSRRVCAPSATTSLWWTGWSTTSFC
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mRNA from alignment at Ecto-sp13_S_contig14028:2306..3851+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14028.3141.1 ID=mRNA_Ecto-sp13_S_contig14028.3141.1|Name=mRNA_Ecto-sp13_S_contig14028.3141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1546bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14028:2306..3851+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTGTGCACGTTGTGCGTAAGAGCGGCAGGTTTCGGGTTCACCCCACGGC
ACCGTTCCTGCAAATCGAGTGTTCGATCAGGTGAGATGTGAAAGAGTGCG
GGGAATCCCGCCGACAGCAGTTCTTCCGCAACTTGGAAGCTTTAGTTCGA
ATCTGGAGAACTACCTACGGCTTTAGTCTAGCTTTCGTTGCGGTCGCGCA
GCTGCCATTTAGCACGTTTCGTACTTCGCGCGACAGCACGCGTAGTGCCA
CCTCAGGGAGATGCAGCGCGTCGCCTTACTAGTTTTTTTTTGTTTTTTTC
GATGCCATCCTGTTCATCTTTTTCCGCCAAAGTTGCGCTTGGGCGGCACA
ACCTTCAACCGTGGTCCATATCAATCAACTTGTGTGATTTTTCGCCAGCG
ATCTTGCCTGCAAAGCCTCTACAATTGTGCTGCTGTAGTGCTGAGTTGGC
ACTTCTTCGTGGCATCGTTCGTTCAAGATACAGTTCATACTCTGCGACAC
GTTTGGTGTTGCCCGACACAACCGCAGCTGCTGATCTCGGCAGACCTACA
TGTTCATGCATATGTGCAGCACATGTAACATGCGGTTACATGTTCATGGG
GCAGCAGCAGGTTCGAGTAGCAGACATGAGAGCCTCGTCATGGAGAAATA
AGTTGGCTTGACAACATTTCCCTTCACATGTTTATCAACGGAATATAAAT
TTATGTCACCCTCGAAATGATTGTCCGCGTGTGGTGTCTCGTTCATGCTC
AGCATAGGCCGGTATCTTCGACAGTGAACGGCGGCTGCGATGCAACGTGC
TCCTGCCAGTGGAGGCCAAGCGGGCCTTGCGCCAGCGGTGGAGCCCACTG
CGGCAGAGGTGCGTGCTACCTTCACACGAAAGACACACGTTTCAAAACGT
CATCATCGTTTAGTGTACATGGACATGTCCAATCCCCGTCCTCGCCCTCA
GATAACCTGGTTCATTTTCATGCTTGAGAATCCACCATCCCTCCCTCCCT
CCCTTCCCCCTCCCCTTCGCAGCGGCTCGACAATGTTGGCAAGCTAGTCG
CCGAAAAGAAGCCCTGGCCCGCCTTTCTGCACCTCGGAGCTCGAGCAACG
GAAGGGTGGGAGGCTTGCCCCACCCCCGTACAAGAGGCTCTGGCATGGAT
GGCGGGAGCCACGGTTGGGGTGCTCAACACTGCGAGCGTTGGGCCCTTAG
TGCCTGTGTGCCAGGCATTCCAGGGGTTGATCGAGGCTGCCGAAGGTGCA
GCGAAGGCCCAGGAGAAGCTCAAGGGGCTGATGTCCCGGTGCGCTTTCCT
CACCAGCGTCTTGATTCAGCACGACCGCCTGGTCGGTCCCCTCGCCAGGT
GAAGCCCATGAAAGACTTCGTCGCCACGACCAACGATCTGGCGGCCTTTG
CGGCGAAGTGGGCCAAGGGCGGTAGGTGTAGGGCGCCTTTTGCCACCGCA
GCGACCGGAGCACTCTCACCGACTTCGAGGAGGGTCTGCGCACCATCAGC
AACGACATCGCTTTGGTGGACGGGCTGGAGCACCACCAGCTTTTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14028:2306..3851+

>mRNA_Ecto-sp13_S_contig14028.3141.1 ID=mRNA_Ecto-sp13_S_contig14028.3141.1|Name=mRNA_Ecto-sp13_S_contig14028.3141.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14028:2306..3851+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGGCGGGAGCCACGGTTGGGGTGCTCAACACTGCGAGCGTTGGGC
CCTTAGTGCCTGTGTGCCAGGCATTCCAGGGGTTGATCGAGGCTGCCGAA
GGTGCAGCGAAGGCCCAGGAGAAGCTCAAGGGGCTGATGTCCCGGTGCGC
TTTCCTCACCAGCGTCTTGATTCAGCACGACCGCCTGGTCGGTCCCCTCG
CCAGGTGAAGCCCATGAAAGACTTCGTCGCCACGACCAACGATCTGGCGG
CCTTTGCGGCGAAGTGGGCCAAGGGCGGTAGGTGTAGGGCGCCTTTTGCC
ACCGCAGCGACCGGAGCACTCTCACCGACTTCGAGGAGGGTCTGCGCACC
ATCAGCAACGACATCGCTTTGGTGGACGGGCTGGAGCACCACCAGCTTTT
GT
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