mRNA_Ecto-sp13_S_contig1402.3138.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1402.3138.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI) HSP 1 Score: 756 bits (1952), Expect = 1.740e-264 Identity = 379/428 (88.55%), Postives = 395/428 (92.29%), Query Frame = 1
Query: 1 KDGDLSTSWTCTGDPREVSARGIQYYECSLLFDLVYTRHIKEVKIALADGAERAVDMSISRGYGTTPEDFVTSSGTTDGLETYDVDYKTSSVRISGNFSSPGQSISISEVEFVEEVVDGEVLLETSYYDDYDWNFELSLFNRIGGTDEPFAILTELESTGTAEYQSIDLTGFADQYVTSVAVHVEGSGESEFPLLNARILGTKIDNPTDTFYVGSTFIAEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVRPVFLSYLLCRTIVVHLTGVSSLLLVSHYRISRYRFDDSPYNIDIYLEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWIDFCDGDAMVVRSSSVVNIDAGYYDEYKATGWRVCTSWTPTTLPSKP 1284
KDGDLSTSWTCTGDPREVS +GI YYECSLLFDLVYTRHIK+VKIALADGAERAVDMSISRGYGTTPE+ VTSSGTTDGLETYDVDY+TSSVRISG+FSSPGQSISISEVEFVEEVVDGEVLLETSY+DDYDWNFELSLFNRIGGTDEP+A LT LE TGTAEYQSIDLTGFA QYVTS+AVHVEGSG SEFPL++ARILGTKIDNPTDTFYVGSTFI EWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTV F Y H+ G + + + RYRFDDSPYNIDI+LEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTW+DFCDGDAMVVRSSSVVNIDAGYYDEYKATGWRVCTSWTPTTLPSKP
Sbjct: 445 KDGDLSTSWTCTGDPREVSPQGILYYECSLLFDLVYTRHIKQVKIALADGAERAVDMSISRGYGTTPEELVTSSGTTDGLETYDVDYRTSSVRISGDFSSPGQSISISEVEFVEEVVDGEVLLETSYFDDYDWNFELSLFNRIGGTDEPYATLTGLEITGTAEYQSIDLTGFAGQYVTSIAVHVEGSGGSEFPLIDARILGTKIDNPTDTFYVGSTFIPEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVVLAFGEY--------HVDG-NIFMKSGVFLKGRYRFDDSPYNIDIFLEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWVDFCDGDAMVVRSSSVVNIDAGYYDEYKATGWRVCTSWTPTTLPSKP 863
BLAST of mRNA_Ecto-sp13_S_contig1402.3138.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 402 bits (1034), Expect = 5.370e-125 Identity = 229/459 (49.89%), Postives = 294/459 (64.05%), Query Frame = 1
Query: 1 KDGDLSTSWTCTGDPREVSARGIQYYECSLLFDLVYTRHIKEVKIALADGAERAVDMSISRGYGTT-PEDFVTSSGTTDGLETYDVDYKTSSVRISGNFSSPGQSISISEVEFVEEVVDGEVLLE--TSYYDDYD--WN---------------------------------------------FELSLFNRIGGTDEPFAILTELESTGTAEYQSIDLTGFADQYVTSVAVHVEGSGESE--FPLLNARILGTKIDNPTDTFYVGSTFIAEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVRPVFLSYLLCRTIVVHLTGVSSLLLVSHYRISRYRFDDSPYNIDIYLEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWIDFCDGDAMVVRSSSVVNIDAGYYDE 1221
KDGD +TSWTCTGDP E + GI YY+C L F LVY RH+K+VK+ALADGAER+VDM ++ + ++ E+FVTSSGTT+G ETYD DYK S +RI+ FSSPG+SISISEVE +EEVV+GE ++ ++ YD+ D WN F+++LFN + GT E + +T LES A+QYVTS+ + ++G+G F +L+A +LGTKIDNP+DTF+VGSTFI W G G PDFVG G+GDQNAIN AIC VKKGTYDGV+CV +DD+ATGTV + +Y + I + S +LL+ + DD P+ DI LEEGA GNTD+DA++VMDGI DA I +WI G YDP+T S AV GLGS +S+V+SQNITC I +C GDA+VVR S++VNIDAG YDE
Sbjct: 565 KDGDFTTSWTCTGDPTEPNDEGITYYQCELFFGLVYYRHVKQVKVALADGAERSVDMRLAGRFSSSIAEEFVTSSGTTNGFETYDFDYKASYIRIAAVFSSPGESISISEVEIMEEVVEGEAPIDIFSTPYDNGDGLWNEPTTDGFEWSSNSNEAIDQSLTLSLAGYHTVTELQLMFPEGDTYKFDVTLFNNLDGTGEAYTTITGLESXXXXXXXXXXXXXXANQYVTSIGIEMKGTGSGAPGFAMLDALVLGTKIDNPSDTFHVGSTFIEYWGGDGYPDFVGSGSGDQNAINGAICGVKKGTYDGVNCVDVDDTATGTVDLSWGAYYVNGNIFMQ----SGVLLLGSFG------DDDPHTTDIVLEEGAEGNTDIDAIVVMDGIRDAWIEKVWIQGNYDPETDGIS-AVSGLGSACLSVVNSQNITCEGVDIRYCSGDALVVRDSTLVNIDAGRYDE 1012
BLAST of mRNA_Ecto-sp13_S_contig1402.3138.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 360 bits (925), Expect = 2.660e-109 Identity = 221/459 (48.15%), Postives = 276/459 (60.13%), Query Frame = 1
Query: 1 KDGDLSTSWTCTGDPREVSARGIQYYECSLLFDLVYTRHIKEVKIALADGAERAVDMSISRGYGTT-PEDFVTSSGTTDGLETYDVDYKTSSVRISGNFSSPGQSISISEVEFVEEVVDGEV--------------LLETSYYDDYDWN-----------------------------------FELSLFNRIGGTDEPFAILTELESTGTAEYQSIDLTGFADQYVTSVAVHVEGSGESE--FPLLNARILGTKIDNPTDTFYVGSTFIAEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVRPVFLSYLLCRTIVVHLTGVSSLLLVSHYRISRYRFDDSPYNIDIYLEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWIDFCDGDAMVVRSSSVVNIDAGYYDE 1221
KDGD+STSWTC+GDP+E YY+C L F++ RHIK+VKIAL DGAERAVDM I+ Y + E FVTSSGTTDG ET++ DY T V I+G F+S GQSISISEVEFVEE+ DGEV L + D ++W+ FEL+L++ DE + T LES + +Q +L G D VT V + ++G+G F L NAR LGT IDNP++TFYVGST++ W PDFV +GTGDQ AI AICAVKK ++DGVDCVG DD+ATG V + + I + +GV Y + + DDSPY DI LE+GA G TD A+IVMDGISDAR+ ++WI+G YD +TSND+PAV GLGS G+SI S NITC + DGDA+VVR S +VNIDAG YDE
Sbjct: 553 KDGDMSTSWTCSGDPQEADD---PYYDCILQFNMFSHRHIKQVKIALPDGAERAVDMRIAAPYDASFGEVFVTSSGTTDGFETFEFDYFTDVVSIAGVFTSGGQSISISEVEFVEEIQDGEVSVVDFDAPYDNGDGLWTGATTDAFEWSSESDEAMDRTLSFVLNSYALMEAVELQFPVGETYKFELTLYD---DGDEIVSTFTGLESVDSEGWQRFEL-GTIDDPVTEVTIIMKGTGSGAPGFKLANARFLGTAIDNPSNTFYVGSTYVESWRSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMK-SGV--------YLDASFSIDDSPYTTDIILEDGAAGKTDTAAIIVMDGISDARLSEVWIYGHYDSETSNDTPAVDGLGSVGLSITGSTNITCRYASVYSSDGDALVVRDSEMVNIDAGPYDE 995
BLAST of mRNA_Ecto-sp13_S_contig1402.3138.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 354 bits (908), Expect = 2.940e-108 Identity = 217/461 (47.07%), Postives = 273/461 (59.22%), Query Frame = 1
Query: 1 KDGDLSTSWTCTGDPREVSARGIQYYECSLLFDLVYTRHIKEVKIALADGAERAVDMSISRGYGTTP----EDFVTSSGTTDGLETYDVDYKTSSVRISGNFSSPGQSISISEVEFVEEVVDGEVLL---ETSYYDDYDW---------------------------------------------NFELSLFNRIGGTDEPFAILTELESTGTAEYQSIDLTGFADQYVTSVAVHVEGSGESE--FPLLNARILGTKIDNPTDTFYVGSTFIAEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVRPVFLSYLLCRTIVVHLTGVSSLLLVSHYRISRYRFDDSPYNIDIYLEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWIDFCDGDAMVVRSSSVVNIDAGYYDE 1221
KDGD+STSWTC+G+P+E + Y+C L F + R+IK+VKIAL DGAERAVDM I+ Y + E FVTSSGTTDG ETYD D+ T+ V I+G F+S GQSISISEVEFVEE+ DGEV + ET YY D W FEL+L++ DE + T ES + +Q +L G D VT +A+ ++G+G F L NAR GT IDNP+DTFYVGST++ EW PDFV +GTGDQ AI AICAVKK ++DGVDCVG DD+ATG V + + I + +GV + + + DDSPY DI LE+GA G TD AMIVMD IS+AR+ + WI G YD +TSND+P V GLGS G+SI S NITC D + DGDA+VVR S ++NID+G YD+
Sbjct: 366 KDGDMSTSWTCSGNPQETADTS---YDCILQFSMFCHRNIKQVKIALPDGAERAVDMRIAAPYSSNSASFEEIFVTSSGTTDGFETYDFDHFTNYVSIAGVFTSSGQSISISEVEFVEEIQDGEVSVVDFETPYYGDALWPGATTDAFVWASESDAAIDEKLSFVLKSYAVMEAVELQFPIGETYKFELTLYD---DEDEIVSTFTGFESVDSEGWQRFEL-GTIDDPVTEIAIVMKGTGSEAPGFKLANARFFGTAIDNPSDTFYVGSTYVTEWNSDRYPDFVAEGTGDQKAIMGAICAVKKASFDGVDCVGGDDAATGEVSMPMGEWFVDGNIFMK-SGV--------HLHAWFSIDDSPYTTDIILEDGAAGKTDTAAMIVMDNISNARLSNTWIIGNYDSETSNDTPTVHGLGSVGLSITGSTNITCIDASVYSSDGDALVVRDSQMINIDSGPYDD 810
BLAST of mRNA_Ecto-sp13_S_contig1402.3138.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 346 bits (887), Expect = 8.270e-104 Identity = 216/464 (46.55%), Postives = 273/464 (58.84%), Query Frame = 1
Query: 1 KDGDLSTSWTCTGDPREVSARGIQYYECSLLFDLVYTRHIKEVKIALADGAERAVDMSISRGY-----GTTPEDFVTSSGTTDGLETYDVDYKTSSVRISGNFSSPGQSISISEVEFVEEVVDGEVLL------------ETSYYDDYDWN------------FELSLFNRIGGTDEPFAI----------------------LTELESTGTAEYQSIDLTGF--ADQYVTSVAVHVEGSGESE--FPLLNARILGTKIDNPTDTFYVGSTFIAEWYGHGD--PDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVRPVFLSYLLCRTIVVHLTGVSSLLLVSHYRISRYRFDDSPYNIDIYLEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDSQNITCADTWIDFCDGDAMVVRSSSVVNIDAGYYDE 1221
KDGD STSWTC G EC+L FDL RHIK+VKIAL DGAERAVDM I+ Y E +VTSSGTTD ETYD D T+ + ISG F+S Q+ISISEVEF+EE+ GE+ + + D +DW FEL+ + + + F + +T ES TA++QS DL+ ADQ++T + + V+G+G F +L+ R++GT IDNPTDT YVGSTFI W G D PDFV +GTGDQ I AIC VKK ++DGVDCVG DD+ATGTV S+ + I + S + L + +DSPY I LEEGA G TD+DAM+VMDGIS+A ++WI G YDPDTSND+PAVPGLGSTG+S+V S NIT D I F DGDA+VVR S++++IDAG Y+E
Sbjct: 563 KDGDFSTSWTCVGGT-----------ECTLRFDLFSWRHIKQVKIALPDGAERAVDMRIAGRYDDELAAAFAEAYVTSSGTTDEFETYDFDVFTNEILISGVFTSASQTISISEVEFMEELQAGEIQISEWNTPLADARVDGPTTDAFDWTTDSDDAIGRTVEFELAWYAMVDAVEIKFPVGDTYKFDLELNDDQIRGEILKTITGFESADTADWQSFDLSQHLDADQFLTEINIVVQGTGSGAPGFAMLDIRVMGTAIDNPTDTVYVGSTFIERWTGLTDRYPDFVAEGTGDQKIIMEAICTVKKASFDGVDCVGGDDAATGTVVLPQGSWYVDGNIFMK----SGVFLDGSFS------EDSPYFTGIILEEGAAGKTDIDAMVVMDGISNAMTDNIWIRGHYDPDTSNDTPAVPGLGSTGLSVVGSTNITLRDAEIRFLDGDALVVRDSNMISIDAGEYEE 1005
BLAST of mRNA_Ecto-sp13_S_contig1402.3138.1 vs. uniprot
Match: D7FUI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUI8_ECTSI) HSP 1 Score: 221 bits (564), Expect = 2.090e-62 Identity = 155/361 (42.94%), Postives = 205/361 (56.79%), Query Frame = 1
Query: 202 EDFVTSSGTTDGLETYDVDYKTSSVRISGNFSSPGQSISISEVEFVEEVVDGEVLLETSYYDDYDWNFELSLFNRIGGTDEPFAILTELESTGT----AEYQSIDLTGFADQYVTSVAVHVEGSGESE--FPLLNARILGTKIDNPTDTFYVGSTFIAEWYGHGDPDFVGQGTGDQNAINAAICAVKKGTYDGVDCVGMDDSATGTVRPVFLSYLLCRTIVVHLTGVSSLLLVSHYRISRYRFDDSPYNI-DIYLEEGAPGNTDVDAMIVMDGISDARIGDLWIHGLYDPDTSNDSPAVPGLGSTGVSIVDS------------QNITCADTWIDFCDGDAMVVRSSSVVNIDAGYYDEYK 1227
E+FV SSGTTDG ETYD DYK SSVRI+ FSSPG+ ISISE E DG + D + +LF + G + E G A +QS DLTGFADQYVTS+ + ++G+G F +L+ +LG KIDNP+DTFYVGSTFI W G+G PDFVG G+GDQNAIN AICAVKKGT+DGVDC+ MD++ATGTV LS++ RT T SS L +R R D + D + ++ +D + + + D + L L + + S ++ L + +V S QN+TC I +C GDA+VVR S++V+IDAG YDE++
Sbjct: 13 EEFVMSSGTTDGFETYDFDYKASSVRIAAVFSSPGEFISISE----EPTTDG-----FEWSSDSNEAISRTLFLSLAGY-----FMAERHGRGVHDHHAGFQSFDLTGFADQYVTSIGIEMKGTGSGAPGFAVLDPMVLGAKIDNPSDTFYVGSTFIEFWSGNGLPDFVGTGSGDQNAINGAICAVKKGTFDGVDCIDMDETATGTVD---LSWV--RT---SWTATSSCSLAFSSSANRRRVDPRELSSRDRHRQQSRRIWPRIDLPLGCE-LPDFVVARLT---LMEMPVTAFSASLHSLPKASLCLVPSVPPLHRSMPNTLQNVTCEGVDIRYCSGDALVVRDSTLVSIDAGRYDEHE 347 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1402.3138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1402.3138.1 >prot_Ecto-sp13_S_contig1402.3138.1 ID=prot_Ecto-sp13_S_contig1402.3138.1|Name=mRNA_Ecto-sp13_S_contig1402.3138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp MSVRSVNDPVMTISDSTAVSFTDDGSYSVASGTCIIQTDDPTTVTIDPDEback to top mRNA from alignment at Ecto-sp13_S_contig1402:512..8414+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1402.3138.1 ID=mRNA_Ecto-sp13_S_contig1402.3138.1|Name=mRNA_Ecto-sp13_S_contig1402.3138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=7903bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1402:512..8414+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1402:512..8414+ >mRNA_Ecto-sp13_S_contig1402.3138.1 ID=mRNA_Ecto-sp13_S_contig1402.3138.1|Name=mRNA_Ecto-sp13_S_contig1402.3138.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1402:512..8414+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |