mRNA_Ecto-sp13_S_contig14017.3137.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14017.3137.1
Unique NamemRNA_Ecto-sp13_S_contig14017.3137.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14017.3137.1 vs. uniprot
Match: A0A6H5JUP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUP0_9PHAE)

HSP 1 Score: 266 bits (680), Expect = 2.440e-78
Identity = 209/249 (83.94%), Postives = 213/249 (85.54%), Query Frame = 1 
Query:   40 MAASRRQRTRDERRLKQALPLLACFGCLAQTGTGFVGHVPRTPNIFTTTTATATSLHQHDRRSWGTTTAAAGRPSSGWRLQGRARAGGVSAATDAAGSAARGSLFGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEVAPEKPRRRRGLGRKTLAAAAKRSRTPVPESTKVASYEIAQAASAGRQAAIEAMEREEADRNALDALAGEQRKELQASVARGDGPTVLVSREGFVP 786
            MAASRRQRTRDERRLKQALPLLACFGCLAQTGTGFVGHVPR P++ T                            SGWRLQGRARAGGVSAA DAAGSAARGS FGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  VEVAPEKPRRRRGLGRKTLAAAAKRS TPVPESTKVASYEIAQAASAGRQAAIEAMEREEADRNAL+ALAGEQRKEL+ASVARGDGPTVLVSREGFVP
Sbjct:    1 MAASRRQRTRDERRLKQALPLLACFGCLAQTGTGFVGHVPRAPSVVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGWRLQGRARAGGVSAAADAAGSAARGSPFGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--VEVAPEKPRRRRGLGRKTLAAAAKRSCTPVPESTKVASYEIAQAASAGRQAAIEAMEREEADRNALNALAGEQRKELRASVARGDGPTVLVSREGFVP 247
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14017.3137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUP0_9PHAE2.440e-7883.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14017contigEcto-sp13_S_contig14017:1954..2741 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size790
Hectar predicted targeting categoryother localisation
Exons1
Cds size786
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462748.9361854-CDS-Ecto-sp13_S_contig14017:1953..27391681462748.9361854-CDS-Ecto-sp13_S_contig14017:1953..2739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14017 1954..2739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14017.3137.1prot_Ecto-sp13_S_contig14017.3137.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14017 1954..2739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14017.3137.1

>prot_Ecto-sp13_S_contig14017.3137.1 ID=prot_Ecto-sp13_S_contig14017.3137.1|Name=mRNA_Ecto-sp13_S_contig14017.3137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=262bp
SSVAASPASSLAAMAASRRQRTRDERRLKQALPLLACFGCLAQTGTGFVG
HVPRTPNIFTTTTATATSLHQHDRRSWGTTTAAAGRPSSGWRLQGRARAG
GVSAATDAAGSAARGSLFGARRPPPSSTSKIVGGGAAGRRSTLAISATAA
DSTSSSSTSSSGGGVEVAPEKPRRRRGLGRKTLAAAAKRSRTPVPESTKV
ASYEIAQAASAGRQAAIEAMEREEADRNALDALAGEQRKELQASVARGDG
PTVLVSREGFVP
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mRNA from alignment at Ecto-sp13_S_contig14017:1954..2741+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14017.3137.1 ID=mRNA_Ecto-sp13_S_contig14017.3137.1|Name=mRNA_Ecto-sp13_S_contig14017.3137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14017:1954..2741+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCAGTGGCTGCAAGCCCGGCTTCCTCGCTCGCCGCCATGGCCGCCAG
CAGACGACAGCGAACCAGAGATGAGAGACGATTAAAGCAGGCACTACCCC
TGTTGGCGTGCTTCGGGTGCCTGGCGCAAACAGGCACAGGCTTCGTCGGC
CATGTGCCTCGAACACCGAACATCTTCACAACAACAACAGCTACTGCAAC
TTCCCTGCATCAACATGACCGTCGATCATGGGGGACGACCACGGCAGCAG
CAGGGAGGCCCAGCAGTGGCTGGAGGCTGCAGGGGAGAGCTAGGGCCGGT
GGTGTATCCGCTGCTACTGATGCTGCTGGTTCTGCTGCGAGGGGCTCCCT
CTTCGGGGCGCGCCGACCGCCCCCGAGTTCAACGAGCAAGATAGTCGGTG
GCGGCGCTGCTGGGCGGAGGTCGACATTAGCGATCAGTGCTACCGCTGCT
GACAGCACCAGCAGCAGCAGCACCAGCAGTAGCGGCGGTGGTGTCGAGGT
GGCCCCGGAAAAGCCGAGAAGAAGGAGGGGGCTGGGCAGAAAAACGCTGG
CAGCGGCGGCGAAGCGAAGCCGTACGCCTGTGCCAGAGTCGACGAAGGTG
GCGTCGTACGAGATAGCACAGGCAGCCTCGGCAGGGCGTCAGGCGGCGAT
CGAGGCGATGGAGAGGGAGGAAGCGGACCGGAACGCCCTCGACGCTTTGG
CTGGGGAGCAGCGGAAGGAGTTGCAGGCTAGCGTTGCGCGGGGGGACGGG
CCGACGGTGCTCGTGTCGAGGGAGGGATTCGTCCCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14017:1954..2741+

>mRNA_Ecto-sp13_S_contig14017.3137.1 ID=mRNA_Ecto-sp13_S_contig14017.3137.1|Name=mRNA_Ecto-sp13_S_contig14017.3137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=786bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14017:1954..2741+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGTCAGTGGCTGCAAGCCCGGCTTCCTCGCTCGCCGCCATGGCCGCCAG
CAGACGACAGCGAACCAGAGATGAGAGACGATTAAAGCAGGCACTACCCC
TGTTGGCGTGCTTCGGGTGCCTGGCGCAAACAGGCACAGGCTTCGTCGGC
CATGTGCCTCGAACACCGAACATCTTCACAACAACAACAGCTACTGCAAC
TTCCCTGCATCAACATGACCGTCGATCATGGGGGACGACCACGGCAGCAG
CAGGGAGGCCCAGCAGTGGCTGGAGGCTGCAGGGGAGAGCTAGGGCCGGT
GGTGTATCCGCTGCTACTGATGCTGCTGGTTCTGCTGCGAGGGGCTCCCT
CTTCGGGGCGCGCCGACCGCCCCCGAGTTCAACGAGCAAGATAGTCGGTG
GCGGCGCTGCTGGGCGGAGGTCGACATTAGCGATCAGTGCTACCGCTGCT
GACAGCACCAGCAGCAGCAGCACCAGCAGTAGCGGCGGTGGTGTCGAGGT
GGCCCCGGAAAAGCCGAGAAGAAGGAGGGGGCTGGGCAGAAAAACGCTGG
CAGCGGCGGCGAAGCGAAGCCGTACGCCTGTGCCAGAGTCGACGAAGGTG
GCGTCGTACGAGATAGCACAGGCAGCCTCGGCAGGGCGTCAGGCGGCGAT
CGAGGCGATGGAGAGGGAGGAAGCGGACCGGAACGCCCTCGACGCTTTGG
CTGGGGAGCAGCGGAAGGAGTTGCAGGCTAGCGTTGCGCGGGGGGACGGG
CCGACGGTGCTCGTGTCGAGGGAGGGATTCGTCCCG
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