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Homology
BLAST of mRNA_Ecto-sp13_S_contig14012.3133.1 vs. uniprot
Match: D7G4L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L4_ECTSI) HSP 1 Score: 471 bits (1213), Expect = 1.790e-159 Identity = 356/500 (71.20%), Postives = 364/500 (72.80%), Query Frame = 1
Query: 43 MADAGTTAAELTAVAEDLAKTSAKIEGVEMALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASAS-VQAASMSVAFPPVGALPTGTAPASTDTSTEELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAHRSPDSSSREHGDATTGEGGHHVAHDSDFGGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPXXXXXXXXXPAEVGGPEVVVPDGDACGNGVASGAPSPTVEVGAAQVTATLEGGGVXXXXXXXXXXXXXPAAGYVSGGGGDDGMLGVVHGDVQMAPVELALASPHQLLAQSPAPQLSSSTPHVNGASGAAE--PPSLEAVGISPAQHHAAG----SSPAEGARVEESVLAGRGASLLGHHGGAIGADLGVVGGGQGQGGPVGCGGPLRSVKRRAGEGGAGIPQAAGSNKRRARASARCQYPGCMTARTFGRQGDRQASFCAV 1521
MADAGTT AELTAVAEDLAKTSAKIE VEMALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASAS VQAAS+SVAFPPVGALPTGTAPASTDTS EELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAH PD+SS EHGDATTG+ GHHVA DSDFGGAE VGG EVVVPDG G VASGAPSPTVE GAAQV ATLEGGGV PAAGYVSGGGGD G +GVVHGDVQ +ALASPHQLLAQSPAP+LSS T HVNGA GAA PPSLEAVG+SPAQHHAA SSPAEGAR EE LAGRGA GGQG G VGCGGPLRSVKRRAG+GGAGI QAAGSNKRRARASARCQYPGCMTARTFGRQGDRQASFCAV
Sbjct: 1 MADAGTTTAELTAVAEDLAKTSAKIESVEMALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASASAVQAASISVAFPPVGALPTGTAPASTDTSMEELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IAHGGPDNSSGEHGDATTGQDGHHVADDSDFGGAE--------------------------------------------------------------VGGQEVVVPDGGDIG--VASGAPSPTVEAGAAQVAATLEGGGVTDVTEGVLNAGVTPAAGYVSGGGGDGGAVGVVHGDVQ-----IALASPHQLLAQSPAPELSSPTLHVNGAPGAAAELPPSLEAVGVSPAQHHAAAAGGASSPAEGARGEEYALAGRGAXXXXXXXXXXXXXXXXXXGGQG--GAVGCGGPLRSVKRRAGDGGAGISQAAGSNKRRARASARCQYPGCMTARTFGRQGDRQASFCAV 428
BLAST of mRNA_Ecto-sp13_S_contig14012.3133.1 vs. uniprot
Match: A0A6H5KKE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE2_9PHAE) HSP 1 Score: 341 bits (875), Expect = 1.520e-109 Identity = 338/435 (77.70%), Postives = 345/435 (79.31%), Query Frame = 1
Query: 130 MALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASASVQAASMSVAFPPVGALPTGTAPASTDTSTEELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAHRSPDSSSREHGDATTGEGGHHVAHDSDFGGAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------GPXXXXXXXXXPAEVGGPEVVVPDGDACGNGVASGAPSPTVEVGAAQVTATLEGGGVXXXXXXXXXXXXXPAAGYVSGGGGDDGMLGVVHGDVQMAPVELALASPHQLLAQSPAPQLSSSTPHVNGASGAAE--PPSLEAVGISPAQHHAAG----SSPAEGARVEESVLAGRGASLLGHHGGAIGADLGVVGGGQGQGGPVGCGGPLRSVKRRAGEGGAG 1395
MALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAV GASA AFP +GALPTGTAPASTDTSTEELTS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAHR PDSSS EHGDATTG+ HHVA DSDFGGAE AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXPAEVGG EVVVPDG A GNGVASGAPSPTVE TLE XXXXXXXXXXXXX VHGD+QMAPVELALASPHQLLAQSPAP+LSS T HV A GAA PPSLEAVG+SPAQHHAA SSPAE AR EES LAGRGA LLGHHGG IGAD+GVV GGQGQG PVGCGGPLRSVKRRAGEGG+G
Sbjct: 1 MALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVTGASAXXXXXXXXXAFPSMGALPTGTAPASTDTSTEELTSSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--IAHRGPDSSSGEHGDATTGQDCHHVADDSDFGGAETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAPAPXXXVPXXXXXXXXXXXXPAEVGGQEVVVPDGGASGNGVASGAPSPTVEAXXXXXXXTLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVHGDLQMAPVELALASPHQLLAQSPAPELSSPTLHVGRAPGAAAEFPPSLEAVGVSPAQHHAAAAAGASSPAEWARGEESALAGRGAGLLGHHGGVIGADVGVVVGGQGQGDPVGCGGPLRSVKRRAGEGGSG 433
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 1521 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-07_000160.1 |
| Cds size | 1521 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462748.6968305-CDS-Ecto-sp13_S_contig14012:468..582 | 1681462748.6968305-CDS-Ecto-sp13_S_contig14012:468..582 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14012 469..582 + |
| 1681462748.7126184-CDS-Ecto-sp13_S_contig14012:1578..1717 | 1681462748.7126184-CDS-Ecto-sp13_S_contig14012:1578..1717 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14012 1579..1717 + |
| 1681462748.7217119-CDS-Ecto-sp13_S_contig14012:2258..3088 | 1681462748.7217119-CDS-Ecto-sp13_S_contig14012:2258..3088 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14012 2259..3088 + |
| 1681462748.730439-CDS-Ecto-sp13_S_contig14012:3578..3882 | 1681462748.730439-CDS-Ecto-sp13_S_contig14012:3578..3882 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14012 3579..3882 + |
| 1681462748.7394748-CDS-Ecto-sp13_S_contig14012:4407..4541 | 1681462748.7394748-CDS-Ecto-sp13_S_contig14012:4407..4541 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig14012 4408..4541 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig14012.3133.1 >prot_Ecto-sp13_S_contig14012.3133.1 ID=prot_Ecto-sp13_S_contig14012.3133.1|Name=mRNA_Ecto-sp13_S_contig14012.3133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=507bp
MEGHQHPQQYYGGGMADAGTTAAELTAVAEDLAKTSAKIEGVEMALSGQG VYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASASVQAASMSV AFPPVGALPTGTAPASTDTSTEELTSSSSSSSSSSTAATTSTTAAAAVVP VPAAAAGSSGGGGGGGGIAHRSPDSSSREHGDATTGEGGHHVAHDSDFGG AEAAGASAVPASAVPATAVAAAVAAAVAAPIAAMPAAAARAAAAAPAVSA GPAAAAVHAAAPAEVGGPEVVVPDGDACGNGVASGAPSPTVEVGAAQVTA TLEGGGVTGVTEGVPNAGVTPAAGYVSGGGGDDGMLGVVHGDVQMAPVEL ALASPHQLLAQSPAPQLSSSTPHVNGASGAAEPPSLEAVGISPAQHHAAG SSPAEGARVEESVLAGRGASLLGHHGGAIGADLGVVGGGQGQGGPVGCGG PLRSVKRRAGEGGAGIPQAAGSNKRRARASARCQYPGCMTARTFGRQGDR QASFCAV back to topmRNA from alignment at Ecto-sp13_S_contig14012:469..4541+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig14012.3133.1 ID=mRNA_Ecto-sp13_S_contig14012.3133.1|Name=mRNA_Ecto-sp13_S_contig14012.3133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4073bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14012:469..4541+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGAAGGCCATCAACACCCACAGCAGTACTACGGCGGCGGCATGGCCGA
TGCCGGGACGACCGCAGCGGAGCTGACCGCTGTAGCAGAAGATCTCGCTA
AGACTTCTGCAAAGGTGTGTGCTGTGTGCGGTGTATGATCGTCTTGCTGT
TCATGCGTCGTCGGTCGCCGGCACCCCCCCGCGCCTGCTGGGTGCGTCGG
TCGCAGTCGGACAGTCCCATCCCTCCTCCATTTCCCCCAGGAAGGAGAGT
CACTTACTTTTGGGCCGGAGATATGTAACATATCTGAGCTGCCCAGACAT
ACCGTTGCCGAGATCAGGACCCTCATTGACCGAATGTTATTATATTATCA
TATTCGACAACCTGTTGCTGCTGCAATCGACTGACCTTTCGCGGGGATCC
TGGGGAAACAGGGTGGTTGTGTTTGCGAGTTTTTTTTTTTTTGCTGCTCC
TCGCGGTGTGTTGAAAACGCACGCGTTCAGGGTGGTCATGCTTGCTGTAC
ACGGATCTCTGTTTTGCAAAACTAATGACTCAATCGCTCCCCCCCCAGTG
GCAGGGCCGCCATGTACAAGAGACATTTCGGTTGACATGTGCTATGTAAA
GCGTTCCAGTCTCCGACTAGTACTGATAAAGGAGAAATCCGATCAGTACC
TTCTAGTGTCCGTACGAGTGCTTTGCTTTATCACCGCATCCTGTTCATCC
CCCTCTTCACTAGGAAACTTTATGCAGCACACCATACCCCACAGAAGCAC
TGCCATGTTAACATGTTTAATCTACATGTCGAGCTGAGAGGAGGGTTCAC
CGAGAGAAGAGTTGATGTCCTCGTTGTGGAATAATATTTTCGACCCCCGC
TCACGACAGGATTCCGATTCCTAGATTGGCTGGTCCTGTACCAGACAGGC
CGAAACAGCGGCACGGGCATTATCCCTCCAAGTTGATTCTACAGCGCTTG
GATCAATATTTCCACACAACAACCGATGTTTCTACAGAGTAGAAGGTCCT
TACAAAACCGACATTCCCGAGATAACTGGGACGTCTGTTTGTGTTGTCTG
GCCTGACTGCCTCTTTGTGCACCATCGCCGACGTCGATACCCCGCCGCCG
TCGTCCACAGATTGAAGGCGTGGAGATGGCGCTCAGCGGACAGGGTGTGT
ACCTGGGCATCACGGACAAAGATACCCTGCTGAGCCAGCTGGACGTGCTG
CAGAAGAAGGAGGCTCAGCTGCAGACGAAGGAGCTGTTCATCATGGCCGG
TGCGTTCCTGCCTGCCGTGCCGTAATAGCGAACGGTGACCACGGACGAAG
CAAAGGAAACCTAAATAAATCATCCTCTCCGCAACACCGCTTCACCATGA
CGAAGACAGCAAACAAGAATGAACAAGCCGTTTGCACTGAACTTGATCTC
TTGCTTGGCGTTGGTTTAAGGTATGCTAGAAGTGTGCTCACAGAAGCAAC
GCACAAGTCCTCTTGTGGTGTTTCCGTGGGCGCGTATAAAATATTCTACT
GGCCGTTCGGGCAATGCGTGTTTCGTGCCAAGGTCGTTATCTTAGGGTCA
AGGTTGGCGCTAGGAGGCAATGAAAACGAGAAGTGACCCCATCCCTTACC
GTCTGTTTCTTGCCGAGTCAGCCCTCTTGTCTAGACCCCTGACAAGCATC
GTTCCTTTCGCTCGCACCCGCCATACTCACCACCGAGATCTGCCACTACA
TTGTTCTTGGCACGTAGAAACTTCCAGTTACTTTCTACGACAGCGTTATC
TTTTTTGTTTCTTTTTCCTCCTTGTATGCTCTCCTTTCAGCCGTCGCCGG
AGCATCGGCATCAGTCCAGGCGGCGTCAATGTCCGTGGCGTTTCCACCGG
TGGGCGCCCTGCCAACCGGTACGGCGCCCGCCTCAACCGACACCTCGACG
GAGGAGCTTACATCCTCTTCCTCCTCCTCCTCCTCCTCTTCGACTGCCGC
AACCACCTCGACTACCGCCGCAGCCGCCGTTGTGCCCGTCCCAGCGGCGG
CTGCCGGTAGCAGCGGTGGCGGCGGCGGCGGCGGCGGCATCGCGCACCGT
AGTCCCGACAGCAGCAGCCGTGAGCACGGCGATGCCACCACCGGCGAAGG
TGGTCATCACGTCGCGCACGACAGCGATTTCGGCGGGGCTGAAGCTGCTG
GTGCTTCTGCTGTGCCTGCTTCTGCCGTGCCGGCTACTGCTGTTGCTGCG
GCTGTTGCTGCGGCTGTTGCTGCTCCTATTGCTGCTATGCCCGCTGCTGC
CGCACGTGCTGCTGCTGCTGCTCCTGCTGTTTCTGCTGGGCCTGCTGCAG
CTGCTGTGCATGCTGCCGCGCCTGCCGAGGTGGGCGGGCCAGAGGTTGTT
GTGCCCGATGGTGACGCTTGCGGCAACGGGGTAGCTAGCGGTGCTCCCTC
TCCGACCGTGGAGGTAGGAGCAGCACAAGTCACAGCTACCCTTGAAGGTG
GGGGAGTGACGGGTGTTACAGAAGGCGTTCCTAACGCAGGCGTTACTCCT
GCTGCCGGGTATGTCAGCGGTGGTGGTGGCGATGATGGTATGCTGGGAGT
GGTTCATGGTGATGTGCAGATGGCGCCTGTGGAGCTGGCGTTGGCTTCCC
CTCATCAGCTTCTTGCCCAGGTAAGGAAATGTCAGCATAGCTGGTGAATT
TTCATGCCCAGTGTGATGTTCAAGCTGATCTCTCCGCACAACGACGCAAA
ATATGGTGCTATGCCCGTGCTACCTTGATTAAACCGTGGTAAATGATCAG
GACCGTTGCCCATCACCACTCGTGTTAGCAAATATTGTAGCGCTGCGATA
AAGGTACAGTAGTTGAACTCAGTTTCACAAGAATCAATCGTGACTGCGTC
ATTGATGTGATGTGCGTGGCACATTGAGAATGTCGAGAAGAGCGGGCATT
GAAGCGAACACCAACCATGACATTGTCCCCTTCCGTCGAACACATGGAGA
AGCATGAGTTCAATGTTTGAGTCAGGTAGCCTCGTTATCACGACCTATGT
TGTACATGCATGATCTACGGTACTACCAACATGCATACCTCTCACGAGCG
ATTTATTTGCTGGCCACGTTCTCCCTCGCGCCCGCCCCTACTCCTCGCCA
CTTCAAACAGTCGCCGGCTCCCCAACTGTCCAGCTCAACGCCCCACGTCA
ACGGCGCCTCCGGGGCAGCCGAGCCCCCGTCCCTCGAAGCGGTCGGTATC
TCCCCCGCTCAGCACCACGCCGCAGGGTCTTCTCCCGCGGAGGGGGCACG
CGTAGAAGAATCCGTTTTAGCGGGGCGGGGAGCGAGTCTGTTGGGACATC
ACGGGGGTGCGATTGGTGCCGATCTCGGCGTGGTCGGGGGTGGGCAAGGG
CAAGGGGGCCCCGTGGGGTGCGGGGGACCATTACGGTCGGTCAAGAGACG
GGCGGGAGAGGGAGGTGCGTGCGGCGCGGGTGTGTTTAGTCGGGTTTGAA
ACGAGTCGCTCGAGAGATCGGGCGTTGGCTCGACGCTTGCGGGTGGTTGG
ATTAGCCTCTGCGTCGGCGATGAGGTTGATTGATTCCCTTGCTGAGGTCG
GGTGCAAGAACACGGCTGGGCGGGTGAGAAGGTGCGGGTTTTGTGGGCTC
CAGCGAGCGACCGAAGTTTCACCATTCGACAAGTAATCTTCGCGTTGACG
GGTTGCTCGTCTGTTGGTTTGATCTCGGTTGGCACAGCCGGCAACTTACA
CGGTGTTGGAAAAAAATTGAAAGATGGTTGGTACAGCAGTTTCTACCATC
GTTTGTTTAGATTTGCATAGCCTGTCACCATGAGCAGTTTGGAGAATCAG
CAAGGCATGTTGCCGAAATATTGTTTACGTAGTAAATTGAGCATCGACCC
GAACTTGACGCTCCTTGCCTTAATTGTTGGCCTGTAGCATCTATCCAACC
TTGACATAATGTTGCTCCGACGCAATACTGTGACTGTAGGAGCCGGGATC
CCGCAGGCGGCGGGCAGTAACAAGCGTCGTGCAAGAGCCAGCGCCCGGTG
TCAATACCCGGGCTGCATGACGGCCCGTACTTTCGGGCGACAGGGGGACC
GACAGGCTTCCTTCTGCGCCGTC back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig14012:469..4541+ >mRNA_Ecto-sp13_S_contig14012.3133.1 ID=mRNA_Ecto-sp13_S_contig14012.3133.1|Name=mRNA_Ecto-sp13_S_contig14012.3133.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1521bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14012:469..4541+ (Ectocarpus species13 EcNAP12_S_4_19m) ATGGAAGGCCATCAACACCCACAGCAGTACTACGGCGGCGGCATGGCCGA TGCCGGGACGACCGCAGCGGAGCTGACCGCTGTAGCAGAAGATCTCGCTA AGACTTCTGCAAAGATTGAAGGCGTGGAGATGGCGCTCAGCGGACAGGGT GTGTACCTGGGCATCACGGACAAAGATACCCTGCTGAGCCAGCTGGACGT GCTGCAGAAGAAGGAGGCTCAGCTGCAGACGAAGGAGCTGTTCATCATGG CCGCCGTCGCCGGAGCATCGGCATCAGTCCAGGCGGCGTCAATGTCCGTG GCGTTTCCACCGGTGGGCGCCCTGCCAACCGGTACGGCGCCCGCCTCAAC CGACACCTCGACGGAGGAGCTTACATCCTCTTCCTCCTCCTCCTCCTCCT CTTCGACTGCCGCAACCACCTCGACTACCGCCGCAGCCGCCGTTGTGCCC GTCCCAGCGGCGGCTGCCGGTAGCAGCGGTGGCGGCGGCGGCGGCGGCGG CATCGCGCACCGTAGTCCCGACAGCAGCAGCCGTGAGCACGGCGATGCCA CCACCGGCGAAGGTGGTCATCACGTCGCGCACGACAGCGATTTCGGCGGG GCTGAAGCTGCTGGTGCTTCTGCTGTGCCTGCTTCTGCCGTGCCGGCTAC TGCTGTTGCTGCGGCTGTTGCTGCGGCTGTTGCTGCTCCTATTGCTGCTA TGCCCGCTGCTGCCGCACGTGCTGCTGCTGCTGCTCCTGCTGTTTCTGCT GGGCCTGCTGCAGCTGCTGTGCATGCTGCCGCGCCTGCCGAGGTGGGCGG GCCAGAGGTTGTTGTGCCCGATGGTGACGCTTGCGGCAACGGGGTAGCTA GCGGTGCTCCCTCTCCGACCGTGGAGGTAGGAGCAGCACAAGTCACAGCT ACCCTTGAAGGTGGGGGAGTGACGGGTGTTACAGAAGGCGTTCCTAACGC AGGCGTTACTCCTGCTGCCGGGTATGTCAGCGGTGGTGGTGGCGATGATG GTATGCTGGGAGTGGTTCATGGTGATGTGCAGATGGCGCCTGTGGAGCTG GCGTTGGCTTCCCCTCATCAGCTTCTTGCCCAGTCGCCGGCTCCCCAACT GTCCAGCTCAACGCCCCACGTCAACGGCGCCTCCGGGGCAGCCGAGCCCC CGTCCCTCGAAGCGGTCGGTATCTCCCCCGCTCAGCACCACGCCGCAGGG TCTTCTCCCGCGGAGGGGGCACGCGTAGAAGAATCCGTTTTAGCGGGGCG GGGAGCGAGTCTGTTGGGACATCACGGGGGTGCGATTGGTGCCGATCTCG GCGTGGTCGGGGGTGGGCAAGGGCAAGGGGGCCCCGTGGGGTGCGGGGGA CCATTACGGTCGGTCAAGAGACGGGCGGGAGAGGGAGGAGCCGGGATCCC GCAGGCGGCGGGCAGTAACAAGCGTCGTGCAAGAGCCAGCGCCCGGTGTC AATACCCGGGCTGCATGACGGCCCGTACTTTCGGGCGACAGGGGGACCGA CAGGCTTCCTTCTGCGCCGTC back to top
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