mRNA_Ecto-sp13_S_contig10315.313.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10315.313.1
Unique NamemRNA_Ecto-sp13_S_contig10315.313.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: D7G271_ECTSI (PCI domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G271_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 1.690e-143
Identity = 246/309 (79.61%), Postives = 251/309 (81.23%), Query Frame = 1
Query:    1 MADVDMKDASEAATAAGEKGEVAAVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927
            M DVDMKDAS AATAAGEKGEVAAVP+SIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLC+ALAKLLPDDCPDKAELTRLLAKLPSEA+AEP+ P TEAMEVDSEAAKKEA       XXXXXXXEEAL SVVAA+LPEVEVYLSTLVLTTLLRHKANA                                             RPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKV QN
Sbjct:    1 MTDVDMKDASAAATAAGEKGEVAAVPKSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCEALAKLLPDDCPDKAELTRLLAKLPSEAVAEPETPTTEAMEVDSEAAKKEAAAAATAEXXXXXXXEEALASVVAAKLPEVEVYLSTLVLTTLLRHKANA---------------------------------------------RPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVSQN 264          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A835YND8_9STRA (Proteasome regulatory subunit C-terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YND8_9STRA)

HSP 1 Score: 251 bits (642), Expect = 2.860e-76
Identity = 157/300 (52.33%), Postives = 188/300 (62.67%), Query Frame = 1
Query:   37 ATAAGEKGEVAAVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEA--MEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVA-VAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927
            A AA +    AA P  I + DI RN   IV+  + +  RLT RAI   T IR RV   VL +A+   +P+  P +A++   L  LP+ A+     P +EA  MEV+ E  K  A               E  +S+ A   PEVE Y+  LVL  +LR      A+  +A  LL R  SFNRRTLD LA+K++FY SLA E +GR  + R  LL LHRTCCLRHDEIGQAT LNLLLR +LSQNLLDQAYKLASKTNFPE+CSNNQFCRYLYYMGRI ALQLDYTDA+ KL Q +RK P N
Sbjct:   17 APAADDATPKAAAP--ITLADIKRNIGFIVRATESNQHRLTLRAIRNTTAIRTRVAPAVLKEAVMAYVPETHPARAQMLETLDALPAPAVEAAAEPPSEAASMEVEGEKEKDPAAPEGAETPEPAKEKWEEKLSLAA---PEVETYVCMLVLAVVLRSGGETGALLPLANALLARVTSFNRRTLDHLASKVLFYCSLAHERAGRASDMRAPLLALHRTCCLRHDEIGQATALNLLLRQMLSQNLLDQAYKLASKTNFPETCSNNQFCRYLYYMGRIGALQLDYTDAHAKLTQCARKAPAN 311          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A7S3HE23_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HE23_9STRA)

HSP 1 Score: 208 bits (529), Expect = 3.260e-62
Identity = 116/234 (49.57%), Postives = 155/234 (66.24%), Query Frame = 1
Query:  232 KLLPDDCPDKAELTRLLAKLPSEAIAEPKPPA--TEAMEVDS-EAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQ 924
            K +P DCP    + + + K+P   +AE K PA  T++M+VD+ E A+K                   +V+ V   LPEVEVY+ TL++TTLLRH+ NA+A   A   +ER  +FNRR+LD   +K  FY SLA+E   RL   RP LL L+RT C+RHD++GQA  LNLLLRN LS +L++QA+ L+ +  FPES SNNQFCRYLYYMGRI A+QL+Y++AY +LM +SRK PQ
Sbjct:    6 KYVPTDCPTYQVMLKAIEKVPETGVAESKKPADETDSMDVDANEGAEK-------------------IVAAVTTVLPEVEVYIFTLIVTTLLRHELNAEAAYAATAQIERIRTFNRRSLDIFTSKAYFYLSLAYEKINRLENIRPTLLALYRTSCVRHDDMGQAVLLNLLLRNYLSYHLVEQAHTLSLRAAFPESASNNQFCRYLYYMGRIQAVQLEYSEAYQRLMMASRKAPQ 220          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A7S2S1L3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1L3_9STRA)

HSP 1 Score: 209 bits (533), Expect = 3.000e-60
Identity = 146/292 (50.00%), Postives = 179/292 (61.30%), Query Frame = 1
Query:   61 EVAAVPQSIK---VEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927
            EV A PQ      +ED+     +I K V  +  RL +RA+  NT +R +    +L  A  +LLPD    +A L   ++ LP        PPA  A++  +       XXXXXXXXXXXXXX     S++    PEVEVYLS LV+TTLLRH    +A   A  L     + NRR+LD L AK+ FY SLA E  G L   RP L+  HRT CL+HDE+GQAT LNLLLR+LL  N ++QAYKL SKTNFPE  SNNQFCRYLYY GRI A+QL+Y DAY KL+Q+ RK PQN
Sbjct:   31 EVQAAPQERPRGGIEDVRHIVAMIEKAVATNQTRLISRALRHNTAVRTKATKVLLTKASDELLPDGHELQARLMEQISALPD-------PPADMALDGGAXXXXXXXXXXXXXXXXXXXXXXAKRTSII----PEVEVYLSLLVVTTLLRHNLVDEARTAAEALFLYVGTLNRRSLDPLRAKVYFYLSLAHEQKGSLAAIRPHLMAAHRTACLQHDEMGQATLLNLLLRDLLHHNQVEQAYKLVSKTNFPEKASNNQFCRYLYYTGRIAAIQLEYGDAYNKLLQAIRKAPQN 311          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A1V9ZW09_9STRA (26S proteasome non-ATPase regulatory subunit 3 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZW09_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.120e-56
Identity = 123/279 (44.09%), Postives = 165/279 (59.14%), Query Frame = 1
Query:   94 EDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGR-LPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927
            +++ +N  LI K V        TR       IRR + +  L  A+ ++L +D   +A L + LA +P EA            + D  A + +               ++A V +  ++L EVEVYLS LV+  LL+ +   DA  +A ++  R   FNRRTLD  AA+++ Y++ AFE  G  +   RP LL  HRT CLR DEIGQAT LNLLLRN L +NL DQAYKL SKT FPE+ SNNQF RYLYY+G++HA+QL+Y+D+YTKLMQS RK PQN
Sbjct:    6 KELKKNVGLIEKVVASSNKEKLTRVFRTTAHIRRELTSIELTRAIQEILAEDNEARATLLQFLALIPPEAE----------QDFDMNAGEDDPTVNEVE--------KDANVHMERSELIEVEVYLSLLVIALLLKSQLGQDAQRLADQVRGRCAQFNRRTLDIFAARVMTYFAYAFERYGDGITAIRPLLLEAHRTACLRCDEIGQATLLNLLLRNYLHENLYDQAYKLVSKTTFPEAVSNNQFVRYLYYVGKVHAVQLEYSDSYTKLMQSIRKAPQN 266          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A067CGI9_SAPPC (PCI domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CGI9_SAPPC)

HSP 1 Score: 190 bits (482), Expect = 3.630e-53
Identity = 120/278 (43.17%), Postives = 164/278 (58.99%), Query Frame = 1
Query:   97 DIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEA-RPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927
            ++ +N  LI K V  +      R     + IRR +    L  A+ ++L +D   ++ L + +  +  +A          A +VD  A + +               ++A V +  ++L EVE YLS LV+  LL+ +  A+A A A  + +R + FNRRTLD  AA+++ Y++ AFE  G    A RP LL  HRT CLR DEIGQAT LNLLLRN L +NL +QAYKL SKT FPE+ SNNQF RYLYY+G+IHA+QL+YTD+Y KLMQS RK PQN
Sbjct:    7 ELKKNVALIEKVVASNNKEKLARVFRTTSGIRRGLTPAELTRAVTEILAEDNEIRSSLLKFIGLVKPDA----------ADDVDMTAGEDDPAVGDVE--------KDASVHMERSELIEVETYLSLLVIALLLKSQLGAEAQACADLVRQRCMQFNRRTLDLFAARVMTYFAYAFERYGEGYTAIRPLLLTAHRTACLRCDEIGQATLLNLLLRNYLHENLYEQAYKLVSKTTFPEAVSNNQFVRYLYYVGKIHAVQLEYTDSYNKLMQSIRKAPQN 266          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A662X3H3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X3H3_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.910e-51
Identity = 114/284 (40.14%), Postives = 160/284 (56.34%), Query Frame = 1
Query:   70 AVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGR-LPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKV 918
            A  +++  E++ R   L+   V+ +     +R +   + +R+ +    L  A+ +LLPD    K  L  LL+++ ++     K   TE +E+     + +A                 +V +    L EVEVYL   VL  L+++K  A+A+    ++L R   FNRRTLD   AK+  YYS   E  G  L   R  LL  HRT CLR+DEIGQAT +NLLLRN L +NL +QAYK  SKT FPE+ SNNQF RYLYY+G+I A+QL+YT++YTKLMQS RK 
Sbjct:   24 AAEETLVYEELKRTIVLLETVVKTNAKEKISRILRTTSKLRKTLSVGQLQQAVGQLLPDQNESKRALLALLSQISAKVAVTAK---TEDVEMTDATPEADASATTP-----------VVVVLPVVDLIEVEVYLFLYVLAALMKYKLTAEALDTVDKVLVRCQQFNRRTLDPFQAKVFSYYSSIHEQFGHDLSAIRNTLLAAHRTSCLRYDEIGQATLVNLLLRNYLQENLYEQAYKFVSKTTFPETVSNNQFVRYLYYVGKIQAVQLEYTESYTKLMQSIRKA 293          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A7S2FYH6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FYH6_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.930e-51
Identity = 100/161 (62.11%), Postives = 111/161 (68.94%), Query Frame = 1
Query:  448 LPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASK-TNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927
            LPEV VYLS LV+   +  +    A A    L+    + NRRTLD L +K  FY SL  E  G LP  R  LL  HRT CL HDE+GQAT LNLLLRNLLSQNL++QAYKL  K TNFPE  SNNQFCRYLYY GRI ALQL+Y DAYTKL+QS RK PQN
Sbjct:   43 LPEVSVYLSLLVINAFIGAEMLDQAQAACEALVTLLETLNRRTLDPLTSKAYFYLSLVHEKKGTLPSIRTLLLSAHRTACLHHDEMGQATLLNLLLRNLLSQNLVEQAYKLGVKLTNFPEKASNNQFCRYLYYTGRISALQLEYGDAYTKLLQSLRKAPQN 203          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: A0A6A4BAK4_9STRA (26S proteasome non-ATPase regulatory subunit 3 (Fragment) n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A4BAK4_9STRA)

HSP 1 Score: 186 bits (473), Expect = 1.970e-51
Identity = 120/287 (41.81%), Postives = 166/287 (57.84%), Query Frame = 1
Query:   70 AVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGR-LPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927
            A  +++  E++ R   L+   V+ +      R +   + +R+ + A  L  A+A+LLP     K  L  LLAK+  EA A+   P   AM   ++A+ +E                 A +++    L EVE+YL   VL  L++ +   +A+  A +++ R   FNRRTLD L A+   YY+   E  GR LP  R  LLG HRT CLR+DE GQAT +NLLLRN L+ NL +QAYK  SKT FPE+ SNNQF RYLYY+G+I A+QL+YT++YTKLMQS RK P N
Sbjct:   46 AAEEALVYEELKRTITLLETAVRTNAKEKIPRVLRATSKLRKTLSAAQLRLAVAQLLPSQNASKPALLALLAKI--EAKAQALKPQDVAM---TDASSEEEAPAA------------ATLALPVVDLIEVEIYLFLYVLAALVKFRLAQEALDTADKVVARCQQFNRRTLDLLQARAFTYYATIHEQFGRDLPAIRNTLLGAHRTACLRYDEAGQATLINLLLRNYLNDNLYEQAYKFVSKTTFPETVSNNQFVRYLYYVGKIQAVQLEYTESYTKLMQSIRKTPAN 315          
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Match: K3X7P1_GLOUD (PCI domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7P1_GLOUD)

HSP 1 Score: 186 bits (471), Expect = 2.970e-51
Identity = 117/292 (40.07%), Postives = 166/292 (56.85%), Query Frame = 1
Query:   55 KGEVAAVPQSIKVEDIVRNAELIVKGVQGDTARLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSEAIAEPKPPATEAMEVDSEAAKKEAXXXXXXXXXXXXXXEEALVSVVAAQLPEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKMVFYYSLAFEVSGR-LPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLSQNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLMQSSRKVPQN 927
            K EVAA  +++  E++ R   L+   V+ +     +R +   + +R+ +    L  A+ ++LP+    KA L  LL K+ ++  A           VD+E                     + +V +    L EVEVY S  VL  L++++   DA+    ++L R+  FNRRTLD+  AK+  YY+   E  G  LP  R  LL  HRT CLR+DEIGQAT +NLLLRN L +NL +QAYK  +KT FPE+ SNNQF RYL+Y+G+I A+QL+YT++YTKLMQS RK PQN
Sbjct:   20 KSEVAA-EEALVYEELKRMILLLETVVKTNAKEKISRILRNTSKLRKTLSIPQLIQAVNQVLPEKNESKALLLSLLEKIGTKVDAT----------VDTEMTDVSESTPEGDAPATTDNAAKEVVVLPVVDLIEVEVYFSLYVLAALVKYQLADDALQTVQKVLARSEQFNRRTLDAFQAKLYTYYASIHEQFGHDLPAIRSTLLAAHRTACLRYDEIGQATLVNLLLRNYLHENLYEQAYKFVTKTTFPENASNNQFVRYLFYVGKIQAVQLEYTESYTKLMQSIRKAPQN 300          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10315.313.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G271_ECTSI1.690e-14379.61PCI domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835YND8_9STRA2.860e-7652.33Proteasome regulatory subunit C-terminal-domain-co... [more]
A0A7S3HE23_9STRA3.260e-6249.57Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S2S1L3_9STRA3.000e-6050.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9ZW09_9STRA2.120e-5644.0926S proteasome non-ATPase regulatory subunit 3 n=1... [more]
A0A067CGI9_SAPPC3.630e-5343.17PCI domain-containing protein n=3 Tax=Saprolegniac... [more]
A0A662X3H3_9STRA1.910e-5140.14Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A7S2FYH6_9STRA1.930e-5162.11Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6A4BAK4_9STRA1.970e-5141.8126S proteasome non-ATPase regulatory subunit 3 (Fr... [more]
K3X7P1_GLOUD2.970e-5140.07PCI domain-containing protein n=1 Tax=Globisporang... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10315contigEcto-sp13_S_contig10315:2..4624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score426.8
Seed ortholog evalue8.7e-117
Seed eggNOG ortholog2880.D7G271
Preferred namePSMD3
Model size927
KEGG koko:K03033,ko:K03126
KEGG Pathwayko03022,ko03050,ko05169,map03022,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006955,GO:0007088,GO:0007346,GO:0008150,GO:0008152,GO:0008270,GO:0008541,GO:0009056,GO:0009057,GO:0009506,GO:0009896,GO:0009987,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0016020,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030071,GO:0030141,GO:0030163,GO:0031331,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034774,GO:0036211,GO:0036230,GO:0042119,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046872,GO:0046903,GO:0046914,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0055044,GO:0060205,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0071944,GO:0090068,GO:0097708,GO:0099503,GO:0101002,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:2001252
Exons6
EggNOG free text desc.regulation of protein catabolic process
EggNOG OGsKOG2581@1,KOG2581@2759
Cds size927
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03021,ko03036,ko03051
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10315.313.1prot_Ecto-sp13_S_contig10315.313.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10315 2..4624 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462522.6050189-CDS-Ecto-sp13_S_contig10315:1..921681462522.6050189-CDS-Ecto-sp13_S_contig10315:1..92Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10315 2..92 -
1681462522.6172078-CDS-Ecto-sp13_S_contig10315:806..9501681462522.6172078-CDS-Ecto-sp13_S_contig10315:806..950Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10315 807..950 -
1681462522.6262972-CDS-Ecto-sp13_S_contig10315:1734..18541681462522.6262972-CDS-Ecto-sp13_S_contig10315:1734..1854Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10315 1735..1854 -
1681462522.6390657-CDS-Ecto-sp13_S_contig10315:2386..26571681462522.6390657-CDS-Ecto-sp13_S_contig10315:2386..2657Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10315 2387..2657 -
1681462522.6480286-CDS-Ecto-sp13_S_contig10315:3274..33991681462522.6480286-CDS-Ecto-sp13_S_contig10315:3274..3399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10315 3275..3399 -
1681462522.656773-CDS-Ecto-sp13_S_contig10315:4448..46241681462522.656773-CDS-Ecto-sp13_S_contig10315:4448..4624Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10315 4449..4624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10315.313.1

>prot_Ecto-sp13_S_contig10315.313.1 ID=prot_Ecto-sp13_S_contig10315.313.1|Name=mRNA_Ecto-sp13_S_contig10315.313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=309bp
MADVDMKDASEAATAAGEKGEVAAVPQSIKVEDIVRNAELIVKGVQGDTA
RLTTRAISRNTPIRRRVQADVLCDALAKLLPDDCPDKAELTRLLAKLPSE
AIAEPKPPATEAMEVDSEAAKKEAAAAATAEAAAAKKAEEALVSVVAAQL
PEVEVYLSTLVLTTLLRHKANADAVAVAPRLLERAVSFNRRTLDSLAAKM
VFYYSLAFEVSGRLPEARPRLLGLHRTCCLRHDEIGQATTLNLLLRNLLS
QNLLDQAYKLASKTNFPESCSNNQFCRYLYYMGRIHALQLDYTDAYTKLM
QSSRKVPQN
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mRNA from alignment at Ecto-sp13_S_contig10315:2..4624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10315.313.1 ID=mRNA_Ecto-sp13_S_contig10315.313.1|Name=mRNA_Ecto-sp13_S_contig10315.313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10315:2..4624- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGACGTAGACATGAAGGACGCCTCCGAGGCGGCAACAGCAGCGGG GGAGAAGGGGGAAGTGGCGGCGGTGCCCCAGAGCATCAAGGTGGAGGATA TCGTGCGGAACGCAGAGCTCATCGTCAAGGGCGTCCAGGGCGACACCGCT CGGCTTACGACGAGGGCAATCAGTAGGTGGGTTCGTTACACCTACCTGTG CGTGTGGGTATAGTAGTGCAGCACGATATTTCCGCCAAGGGTGCGGGACG GTACGTCGTTGCATAGTACTGCTGTAGCGTCATCTCCCTCTGTAGATGGG CCTGTTTTCTGGTGCCGTTGCGGAGCCCGTGGTTGATTCCTCCGCCTCAC AGCTGCTTGCACTCCCCGGCGGGGTAGTATGTACATGGGTTGGTGGTACG GCGCGCTCGTATGTATATGTGCGGTGTAGTGTTTTGCTTGTGGTACATAG GAGCCTGCAGCTAGCTTGTTCGTTTCCGAAAGTTTTTTTGCGGGATCTCT TCTCTTGACCCTCTCGCAGTAGTGCAGCGACAGCAGTCGGTCAGGCTAGA GCCCGTTTGTACTACAAAAAAACTTCAGACTGATTCCACCGACGAACACG TCGTCAAAGCTGAAGGGGATGTTCATTTTTTCACTTTTCCTCATACGGGA AACAATAGCAGCAGCATGTTCCATGAAGCAGCAGCAGGGAAGGCGGCAAG CATGACGAGATGGTGGAGCTGTTTCTCGGTCATCCCCATCTTCTGGTATA CTGTTGTAGGCGACACATGGCTGCTGTAAGCGCACCAGACCACGGCCATG CGCGGAGAATTGGGTTATGTCGTGGCGAAGGAGGGGGTGACTAAAAAAGG CAGACTGAACCAGGAACTCGGGATGATACGAGGCGCGCAAGGAGCATCTC TCGCCGCGGCGTAGATTGTACTAACCCCCGGTCCTCTTGGCCAACACGCA GACGCTTGAGCCGTCTCATAGCATCACCCTTGTGTGGTTCGTCTTATTCT GACCATGGCCTACTAGGACAACCCATGCACCGCCTGGCCCTCGCCCACTC GTCCTTGCTCTCTTTCTTTCTTTCTGTCCCGCCGCTTCACCTCACCTCGA CCGGCGCTCACCCCCCTCTCCTCTCCGGCATCGATGCGCCGTCCCCCCTC AACATCGGTGGTATCAATGCTTTTGTGGATACGCCGGCTGGTGCCGGTCT TGCCATGGCGCTCGCTATGGTGCAGGAATACACCCATCCGGCGCAGAGTG CAGGCGGATGTGCTGTGTGACGCGTTAGCCAAGCTGCTGCCGGATGACTG CCCAGACAAGGCTGAGCTCACCCGGCTCCTGGCCAAGCTGCCCAGCGAGG GTGAGGGTAGCAACGAGGTTGTCTTGGGGGGGTTGCGCGATGAAATTCGG CGACAAGGCTAGAGAGAATACTTCGGGTTTGCGCAGTAGGCAAGAAATGG CGAGTGCTTTGTAGTATCGCTGCCCGGCAATGGCAATCGACTTAAAGGGT AAGGAGAGGGGCGGGAACAGGCAATTATGGGAAAGAGGGGCCTACCACGC GGAGGAGAAAAAGAGAATGAGGGGATTCAGCATGTAGCACCTGTTGTGCG AGAACCACAAGAGCTGCCGAACGCAGGCTCCGGTTTGCGCCACATTCTGT GTAGATGGCATTGGTGACCTTTGTCCTTTTTCAGCGACCCGCTGACCTCT TCCACCACCACCCTCACCACGCAGATTTTTCGCTCACGTTTTCGGAGGTA AGATCTCTCGTGATAACATTGTTGTTCTTCGTCCGATCACCGCTGGTACG AAAATAGAAACGCCCGAATCCCCCCCCCCCCCCCCCCCCCCCCCGAAAGC CGACCGAAGCCCCCCGCGACGGGAGCCATGCAAGGCGCCCCCCAGGCCGC CCAGAACAGCGAAGCNNNNNNNNNNAAAAAGAAACGCCCGAATCCCCCCC CCCCCTCCCCCCCACAGCGATAGCGGAGCCGAAGCCCCCGGCGACGGAAG CCATGGAGGTCGACTCCGAGGCCGCCAAGAAAGAGGCCGCCGCGGCGGCG ACTGCGGAGGCCGCCGCCGCTAAGAAGGCCGAGGAAGCGCTGGTGAGCGT GGTGGCGGCACAGCTGCCCGAGGTGGAGGTGTACTTGTCAACCCTGGTTT TGACGACGCTGCTGCGGCACAAGGCAAACGCGGACGCGGTGGCGGTTGCG CCGAGGCTGCTGGAGCGGGCCGTGAGCTTCAACCGGAGGTGGGTGCGGGG GCGCGCGCGCCCAGAAGATATGTCTCGAGTGCTTGCTTTTATATTTGTCT GGTGGTTTGTGCCGTGTTGGTATTTAGTGTGCTCCCCCCAGCTGAGAATG TCTTGGGGCCGTTCGAGGCCGCAGTGGCGTGTGGCAGTGAGAAATTCGTC GCTGTTGGTAGTGTGACTTTCGAAGGCCGCTCCCTCTCCCTGCCTACCGT GCTGCTCTTTTTGAATTGTCTTATCGCTCCTTGTGCATGGCGTAGGATAG CGTGAATAGATCACGGTACATCTATGATCCAGTTGACTTCATGTGGGACG GGGAGTGGCAGGGCATGAAGACAAACGACCAATGCGTCCCCCGCGTGACG AAGACAAGACGCTGCTCCGGTTCTCGCTGGCACCCAAACTAATGGTACTT TCCGCTCTCTCAACAAATTCACTGCTGTCCGTTCCCGCCATGCACACGCG CCCGTGCGCCTCTCTTGGAACTAACCGACGCGCCATTGTGCACACGTGAA CGAACGTAAATGTTTCCCAGGACGCTCGACTCCCTCGCGGCGAAGATGGT TTTCTACTACTCGTTGGCGTTCGAGGTGTCGGGGCGGCTGCCGGAGGCGC GACCGCGCCTGCTCGGGCTTCACCGCACGTGCTGCCTCAGGTTTGTCAGG CCTTTCTTTCTCTGCAGGCTTCCGAGCACCGCTGCGAGCACCGTGTGTCT CAGGCGGAGGTGGTGTGTTTCGTAAGTGGGCTCAAGAGGAGAATGCTGCA GTATTTCCTTTTGTTTGACGGCAGTGTTTGCTGGATCTTCCGTTCTTTGG TGATGGCCAACTCTGGCCGCTCGAGTGTTGCTTTGCCGTAGGTTCTCAGA ACCATCTTCGAGGACGGTGCCTGCAATGTTCGGCTAACTCGTCGTTTGCC GCTTGTGGCGTCTTTCGATGTCCGCCAAACCCGCCGCGTGGAATTGTGTT TTTTCGCGGGCGCGTTGTTGGGTCGGGTTGTATCGTTAGTAGTTGCGCAG ACGATGGCATGCAGCTTTCCTTTTCCTCCGCATCTATCTCCGTCTGTCTT GTGCATGTGGAGGCCCGTCTCCGGGCCTCTCTCCTCCTGCCCCTTCGCCT CACTTGATATGCTTAGACTTTCGGCGGTGTGGAAAATTCTGACCTGTTCT GGGTCCGTGATGGGGTTGTCATGACGTCACGCGGTACTCGATAGACTTGC GTGTTTTTTTTTTTTGTAGCATGCGCTCATGAGCGCAACGCAGAAGCGCG ATTTGTTCGGCGGTCCGGCCACGCTATGGCAGCGCCGACTGCTCTTGTCC ACCACCGGCAACACCGCCAACGACAACAACAACAACAACGTCCAACGACC ATCATGCTGCAACTTAACCGCGACGACGATGGCATCAAACAATGCCGCCG GTAACACGACAACGACGGTAACAGGCACGACGAGATCGGGCAGGCGACGA CGCTGAACCTGCTGCTGAGGAACCTGCTCTCCCAGAACCTCCTGGACCAG GCCTACAAGCTCGCCTCCAAGACCAACTTCCCGGAGAGCTGCAGCAACAA CCAGTTCTGCCGATACCTGTGAGAACGCTGCGCTGCGTGTGTTGTCTTCT CCACATGTAACAAACGGATCCGGTGTGCGTACCGGTCCAACTGACGCGGA CGCCTTGCGCGGTAACAGGCTAACTACCCGAAGGAGGGGTACACCACTAC AAATCAAATAAACTAGAAATAGATTGACTGGGTGTTTTTCCCTCTTTTCG ATGGAACGGGGCGAGACTCCTTTTGGTGATTTTCGTCCCTTTTTTTTTGC GGGTCTCTCCCGATGGCAGACTTAGACAGGACTTTGAGGTGTCGCCTACA ACGCTGTAGTCTCAACGATGACTTTCGTTTTTTATTTTCTATTATTTTCT TTTCTTTTTGGTTCGTTTCGTTTTCGTCGCTTTACCAACACTCGCGTACA ATGGATCCATGGACAGACTCACCGCTTGTTGTGTAAAGCTGTGGCAAGTT TCTTGTCGTGGCCGCTTCTTCGCGTTTCTGGTGTTGACTATTGTAGGACC GACACCTCCATGACCATGTTAAGCACGTAAACCGTACAACTTACTGCCGT AATTATCCTTGTTGCTGCTGCTTATGCTACAATGTTAGTGTGGCTGACCT CCTCGTTGCATCAAACGGAACCGTAATCCAAAATGCTGGTACTGTTTACG CCGTTTACCTGCTGCTAATTGTACGAACTGTTGTTGGTTTTCTCTCGATC GCGTCTCCCCTTTCGTTGATTCGCTCGCCAAGTTACTACATGGGGCGCAT CCACGCCCTTCAGCTGGACTACACGGACGCCTACACGAAACTGATGCAGT CCAGCCGTAAGGTCCCTCAGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10315:2..4624-

>mRNA_Ecto-sp13_S_contig10315.313.1 ID=mRNA_Ecto-sp13_S_contig10315.313.1|Name=mRNA_Ecto-sp13_S_contig10315.313.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=927bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10315:2..4624- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGACGTAGACATGAAGGACGCCTCCGAGGCGGCAACAGCAGCGGG
GGAGAAGGGGGAAGTGGCGGCGGTGCCCCAGAGCATCAAGGTGGAGGATA
TCGTGCGGAACGCAGAGCTCATCGTCAAGGGCGTCCAGGGCGACACCGCT
CGGCTTACGACGAGGGCAATCAGTAGGAATACACCCATCCGGCGCAGAGT
GCAGGCGGATGTGCTGTGTGACGCGTTAGCCAAGCTGCTGCCGGATGACT
GCCCAGACAAGGCTGAGCTCACCCGGCTCCTGGCCAAGCTGCCCAGCGAG
GCGATAGCGGAGCCGAAGCCCCCGGCGACGGAAGCCATGGAGGTCGACTC
CGAGGCCGCCAAGAAAGAGGCCGCCGCGGCGGCGACTGCGGAGGCCGCCG
CCGCTAAGAAGGCCGAGGAAGCGCTGGTGAGCGTGGTGGCGGCACAGCTG
CCCGAGGTGGAGGTGTACTTGTCAACCCTGGTTTTGACGACGCTGCTGCG
GCACAAGGCAAACGCGGACGCGGTGGCGGTTGCGCCGAGGCTGCTGGAGC
GGGCCGTGAGCTTCAACCGGAGGACGCTCGACTCCCTCGCGGCGAAGATG
GTTTTCTACTACTCGTTGGCGTTCGAGGTGTCGGGGCGGCTGCCGGAGGC
GCGACCGCGCCTGCTCGGGCTTCACCGCACGTGCTGCCTCAGGCACGACG
AGATCGGGCAGGCGACGACGCTGAACCTGCTGCTGAGGAACCTGCTCTCC
CAGAACCTCCTGGACCAGGCCTACAAGCTCGCCTCCAAGACCAACTTCCC
GGAGAGCTGCAGCAACAACCAGTTCTGCCGATACCTTTACTACATGGGGC
GCATCCACGCCCTTCAGCTGGACTACACGGACGCCTACACGAAACTGATG
CAGTCCAGCCGTAAGGTCCCTCAGAAC
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