mRNA_Ecto-sp13_S_contig14004.3128.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14004.3128.1
Unique NamemRNA_Ecto-sp13_S_contig14004.3128.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: D8LSS8_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSS8_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 2.960e-41
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL
Sbjct:   16 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 87
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: A0A1V9ZKT9_9STRA (Pro-apoptotic serine protease-like protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9ZKT9_9STRA)

HSP 1 Score: 123 bits (309), Expect = 3.930e-31
Identity = 55/72 (76.39%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            T GP + DA+F+NKEEVDLVPIY DPVHDFGFYRFDP  VKF+++ E+ LNP GAKVGVEIRVVGND+GEKL
Sbjct:   84 TPGPVVADAIFVNKEEVDLVPIYRDPVHDFGFYRFDPSRVKFLKLHEIPLNPSGAKVGVEIRVVGNDAGEKL 155
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: A0A485L763_9STRA (Aste57867_17037 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L763_9STRA)

HSP 1 Score: 122 bits (307), Expect = 7.320e-31
Identity = 54/72 (75.00%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            T GP + DA+F+NKEEVDLVPIY DPVHDFGFYRFDP  VKF+++ E+ +NP GAKVGVEIRVVGND+GEKL
Sbjct:   91 TPGPVVADAIFVNKEEVDLVPIYRDPVHDFGFYRFDPSRVKFLKLHEIPINPSGAKVGVEIRVVGNDAGEKL 162
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: A0A662X1B6_9STRA (PDZ_1 domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X1B6_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.010e-30
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            T GP + DA+F+NKEEVDLVPIY DPVHDFGF+RFDPK VKF+E+ E+ L P+ AK+GVEIRVVGND+GEKL
Sbjct:  104 TPGPVVADAIFLNKEEVDLVPIYRDPVHDFGFFRFDPKKVKFLELHEIPLRPEAAKIGVEIRVVGNDAGEKL 175
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: W2NEY6_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica TaxID=4792 RepID=W2NEY6_PHYPR)

HSP 1 Score: 115 bits (289), Expect = 1.160e-30
Identity = 50/72 (69.44%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            T  P + DA+F+NKEEVDLVPIY DPVHDFGF+RFDPK VKF+++ E+ L P+ AK+G EIRVVGND+GEKL
Sbjct:   92 TPWPVVADAIFLNKEEVDLVPIYRDPVHDFGFFRFDPKKVKFLQLHEIPLRPEAAKIGAEIRVVGNDAGEKL 163
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: W2X363_PHYPR (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora parasitica CJ01A1 TaxID=1317063 RepID=W2X363_PHYPR)

HSP 1 Score: 119 bits (297), Expect = 1.640e-30
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            T GP + DA+F+NKEEVDLVPIY DPVHDFGF+RFDPK VKF+++ E+ L P+ AK+G EIRVVGND+GEKL
Sbjct:   92 TPGPVVADAIFLNKEEVDLVPIYRDPVHDFGFFRFDPKKVKFLQLHEIPLRPEAAKIGAEIRVVGNDAGEKL 163
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: A0A3D2CH72_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3D2CH72_9DELT)

HSP 1 Score: 118 bits (295), Expect = 3.780e-30
Identity = 50/70 (71.43%), Postives = 62/70 (88.57%), Query Frame = 1 
Query:    7 GPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            GPT  +AVF+N EEV L PIY+DPVHDFG YRFDP AV+FME+AE+EL+PDGAKVG E+R++GND+GEK+
Sbjct:  202 GPTSAEAVFLNNEEVALDPIYFDPVHDFGIYRFDPAAVRFMELAELELDPDGAKVGAEVRIIGNDAGEKI 271
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: A0A6G0XXT2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXT2_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.730e-30
Identity = 53/72 (73.61%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            T GP + DA+F+NKEEVDLVPIY DPVHDFGFYRFDP  VKF+++ E+ ++P GAKVGVEIRVVGND+GEKL
Sbjct:   83 TPGPVVADAIFVNKEEVDLVPIYRDPVHDFGFYRFDPARVKFLKLHEIPIDPSGAKVGVEIRVVGNDAGEKL 154
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: A0A5D6Y2Q7_9STRA (Pro-apoptotic serine protease NMA111 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2Q7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 4.730e-30
Identity = 53/72 (73.61%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            T GP + DA+F+NKEEVDLVPIY DPVHDFGF+RFDP  VKF+ + E+ L P+GAKVGVEIRVVGND+GEKL
Sbjct:  101 TPGPVVADAIFLNKEEVDLVPIYRDPVHDFGFFRFDPSKVKFLSLHEIPLKPEGAKVGVEIRVVGNDAGEKL 172
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BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Match: A0A0W8C8B1_PHYNI (Pro-apoptotic serine protease n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8C8B1_PHYNI)

HSP 1 Score: 119 bits (297), Expect = 5.020e-30
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 1 
Query:    1 TKGPTMVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGAKVGVEIRVVGNDSGEKL 216
            T GP + DA+F+NKEEVDLVPIY DPVHDFGF+RFDPK VKF+++ E+ L P+ AK+G EIRVVGND+GEKL
Sbjct:   92 TPGPVVADAIFLNKEEVDLVPIYRDPVHDFGFFRFDPKKVKFLQLHEIPLRPEAAKIGAEIRVVGNDAGEKL 163
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14004.3128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSS8_ECTSI2.960e-41100.00PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A1V9ZKT9_9STRA3.930e-3176.39Pro-apoptotic serine protease-like protein n=3 Tax... [more]
A0A485L763_9STRA7.320e-3175.00Aste57867_17037 protein n=1 Tax=Aphanomyces stella... [more]
A0A662X1B6_9STRA1.010e-3073.61PDZ_1 domain-containing protein (Fragment) n=1 Tax... [more]
W2NEY6_PHYPR1.160e-3069.44Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
W2X363_PHYPR1.640e-3070.83Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A3D2CH72_9DELT3.780e-3071.43Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A6G0XXT2_9STRA4.730e-3073.61Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A5D6Y2Q7_9STRA4.730e-3073.61Pro-apoptotic serine protease NMA111 n=1 Tax=Pythi... [more]
A0A0W8C8B1_PHYNI5.020e-3070.83Pro-apoptotic serine protease n=1 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14004contigEcto-sp13_S_contig14004:419..1354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score140.6
Seed ortholog evalue2.8e-31
Seed eggNOG ortholog2880.D8LSS8
Preferred nameDEG7
Model size222
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0009314,GO:0009416,GO:0009507,GO:0009536,GO:0009628,GO:0009642,GO:0009644,GO:0009892,GO:0010109,GO:0010205,GO:0016787,GO:0019222,GO:0019538,GO:0031323,GO:0031324,GO:0042548,GO:0043155,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043467,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0065007,GO:0071704,GO:0140096,GO:1901564,GO:1905156
Exons2
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0265@1,KOG1421@2759
Cds size207
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462748.2821836-UTR-Ecto-sp13_S_contig14004:418..4331681462748.2821836-UTR-Ecto-sp13_S_contig14004:418..433Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig14004 419..433 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462748.2929683-CDS-Ecto-sp13_S_contig14004:433..5501681462748.2929683-CDS-Ecto-sp13_S_contig14004:433..550Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14004 434..550 +
1681462748.3019583-CDS-Ecto-sp13_S_contig14004:1264..13541681462748.3019583-CDS-Ecto-sp13_S_contig14004:1264..1354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14004 1265..1354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14004.3128.1prot_Ecto-sp13_S_contig14004.3128.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14004 434..1354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14004.3128.1

>prot_Ecto-sp13_S_contig14004.3128.1 ID=prot_Ecto-sp13_S_contig14004.3128.1|Name=mRNA_Ecto-sp13_S_contig14004.3128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MVDAVFMNKEEVDLVPIYYDPVHDFGFYRFDPKAVKFMEVAEVELNPDGA
KVGVEIRVVGNDSGEKLR*
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mRNA from alignment at Ecto-sp13_S_contig14004:419..1354+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14004.3128.1 ID=mRNA_Ecto-sp13_S_contig14004.3128.1|Name=mRNA_Ecto-sp13_S_contig14004.3128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14004:419..1354+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCAAAGGGCCGACCATGGTCGACGCCGTCTTCATGAACAAGGAGGAGGT
GGACCTCGTGCCCATCTACTATGACCCCGTGCACGACTTCGGCTTCTACC
GCTTCGATCCCAAGGCGGTCAAGTTTATGGAGGTGAGGCTTGTTTCCTTT
CGCGAGTCTTTTCAACTGAATGGACTGTTTTCGTTGCTCCATGGCGATTC
GAACGAGTATGGGGAGCGCGCCACCGCACATGAGTTTTTTCGATCTGCAT
GCTCGTGTGCCGGTTCGTTGGTGGGGGATCTGCTAGTACTGCGTCTGGAG
AGTAGGAGTGTATTCCCTTTTCGGGTGATTGGCCTGTCGCCACGCAAGGC
GCGCGCGTCAGTTGGACCGGTACGGATGTTGTTTAGAACGTTCTAAGCGG
AGACCGGAACGGTTTTTAATGTGAACACAATAGCGACAACAAAAACAATG
AGTGCACCTGGAGCAGCAGCGCGGACACGTATCCCGACCGGCGGCGTAAT
ACGTATTTTGCCGGCTGATGTTCTAAGTCATTTTCTCCAATGGTTCAATC
CTTCCGATTTTGGCGGAAGACGACCGTGGTATAGGCGAGAGTGGGCGATT
GATTTGTTTGCGATTTTTGCTTGGTTGTTTCCATGTATCTTTTGTCCACA
ACCACCACCACCACCGCCAAAAACATCAATAATTCCGGTGAAAAGCCCCT
GCCCCCCCAGTACCCACGGCCGCGAACTTGTTTTTTACTCTTATCTGCAA
GCGTTGTTTCATGGTTTTGTGATGTACAACAATGCAACTTCTCACTCTTT
CAGTTCGCCGCTCATGCACGGAACCTCTCCCTTTCCCTTGAGACAGGTTG
CCGAGGTGGAGCTCAATCCTGACGGGGCAAAGGTCGGGGTGGAGATCCGA
GTGGTTGGGAACGACAGCGGGGAGAAGCTCAGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14004:419..1354+

>mRNA_Ecto-sp13_S_contig14004.3128.1 ID=mRNA_Ecto-sp13_S_contig14004.3128.1|Name=mRNA_Ecto-sp13_S_contig14004.3128.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14004:419..1354+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTCGACGCCGTCTTCATGAACAAGGAGGAGGTGGACCTCGTGCCCAT
CTACTATGACCCCGTGCACGACTTCGGCTTCTACCGCTTCGATCCCAAGG
CGGTCAAGTTTATGGAGGTTGCCGAGGTGGAGCTCAATCCTGACGGGGCA
AAGGTCGGGGTGGAGATCCGAGTGGTTGGGAACGACAGCGGGGAGAAGCT
CAGGTAG
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