mRNA_Ecto-sp13_S_contig1400.3125.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1400.3125.1
Unique NamemRNA_Ecto-sp13_S_contig1400.3125.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: A0A6H5L317_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L317_9PHAE)

HSP 1 Score: 544 bits (1401), Expect = 6.720e-191
Identity = 305/341 (89.44%), Postives = 312/341 (91.50%), Query Frame = 2 
Query:  245 MADEALEERWLEEQTRIARAVVETDDVLWTLDQPPEQNAATARRPTPPPQHGQTQTAPKEMPSGAA--RGTTNSGDGXXXXXXXXXXXXXXXXPPPAIVTSATHGRLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIREWLLEQRGKAEGETKEAEKGLP 1261
            MA EALEERWLEEQTRIARAVV+TDDVLWTLDQPPE+NAATARRPTPPPQHGQTQT PKEM S A            XXXXXXXXXXXXXXXX    IVTSAT GRLLRLVGGVDISFVKGSEENACASLVVL+FPSL+TVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKV VRER K LLSAG+RETPLLGTS TVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCV LTKAVCRFRVPEPIRQADMRSREVIREWLLE+RGKAEGETK+AE   P
Sbjct:    1 MASEALEERWLEEQTRIARAVVDTDDVLWTLDQPPERNAATARRPTPPPQHGQTQTEPKEMSSAAVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVTSATPGRLLRLVGGVDISFVKGSEENACASLVVLDFPSLKTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVDVRERAKVLLSAGKRETPLLGTSGTVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVALTKAVCRFRVPEPIRQADMRSREVIREWLLERRGKAEGETKKAEGPSP 341
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: D8LPT4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPT4_ECTSI)

HSP 1 Score: 451 bits (1160), Expect = 8.130e-156
Identity = 229/234 (97.86%), Postives = 231/234 (98.72%), Query Frame = 2 
Query:  554 RLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIREWLLEQRGKAEGETKEAEKG 1255
            RLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTS TVWGTA VPKEEEGKKGGGVVTSPVFVSIGHRVSLETCV LTKAVCRFRVPEPIRQADMRSREVIREWLLE+RGKAEGETKEA+KG
Sbjct:    4 RLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSGTVWGTAFVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVALTKAVCRFRVPEPIRQADMRSREVIREWLLERRGKAEGETKEADKG 237
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: A0A835YW13_9STRA (Endonuclease V-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW13_9STRA)

HSP 1 Score: 262 bits (670), Expect = 2.040e-81
Identity = 144/243 (59.26%), Postives = 170/243 (69.96%), Query Frame = 2 
Query:  536 TSATHGRLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIREWLLEQRGKAEGETKEAEKGLPR 1264
            T+A   R LR VGGVDISF K S +NACASLVVL FP L  V++ + RVTM  PYISGFLAFREV+H+A LV +LR ERPDL PDVVFVDGNG LHPRGAGLA HLGV+  LRT+G+GKTFL +DGLT+ GVR    AL      E  L G S TVWG AL   +         VT+P+FVS+GHRV+L+T V LT+A C +R+PEP+RQAD+ SR ++REW  E    A G    AE GL R
Sbjct:   41 TAAAPVRPLRYVGGVDISFTKNSSDNACASLVVLSFPELIVVHQLHARVTMTLPYISGFLAFREVEHIAALVERLRAERPDLLPDVVFVDGNGVLHPRGAGLASHLGVLCNLRTIGIGKTFLHIDGLTRDGVRAACGALPPEARGEYELRGDSGTVWGRALCFNDS--------VTAPIFVSVGHRVALQTAVALTRACCLYRMPEPVRQADILSRALVREWQGED---AAGMGAAAEGGLIR 272
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: W2YQG1_PHYPR (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=W2YQG1_PHYPR)

HSP 1 Score: 228 bits (580), Expect = 6.730e-68
Identity = 119/216 (55.09%), Postives = 150/216 (69.44%), Query Frame = 2 
Query:  554 RLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIREW 1201
            +LLR V GVDISF+KGS+E+ACAS+VVL+FPSL  +YEA+  V++  PYI+GFLAFREV  L +L   LRR RPDL PDV  VDGNG LHP+G GLA H GV+  + T+G+GKTFL VDGLTK  V+  +            L G S  +WG AL         G   V +PV+VS+GH +SL+T V + +A  ++RVPEPIRQAD+RSREVIR+W
Sbjct:   53 KLLRRVAGVDISFLKGSDEHACASIVVLDFPSLTVLYEAFTYVSLPAPYIAGFLAFREVPALTKLYDDLRRRRPDLLPDVTLVDGNGILHPQGFGLASHFGVLENIPTIGVGKTFLHVDGLTKPDVKGLMAKAREEDRDLVKLTGKSGKIWGAALC--------GTAGVKNPVYVSVGHMLSLDTSVAIAQACSQYRVPEPIRQADLRSREVIRKW 260
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: A0A3T1CXH4_9VIRU (Endonuclease V n=1 Tax=Acanthamoeba castellanii medusavirus TaxID=2080449 RepID=A0A3T1CXH4_9VIRU)

HSP 1 Score: 225 bits (573), Expect = 1.000e-67
Identity = 121/215 (56.28%), Postives = 147/215 (68.37%), Query Frame = 2 
Query:  530 IVTSATHGRLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADM 1174
            +VTS      +R VGGVDISFVKG   +ACASLVVL +PSL+ V+     V M  PYISGFLAFRE  HLARL+  LR ERPDLEP V+FVDGNG LHPRG GLA HLGV++G+ T+G+ KTFL VDGL    V+  ++      +   PL+G+S T WG AL  K  +G       T+P++VS+GHRVSL +   LT A CR RVPEPIRQAD+
Sbjct:   18 LVTSDAFDPCVRYVGGVDISFVKGDAVSACASLVVLAYPSLELVWSVERMVAMELPYISGFLAFREAPHLARLIDHLRAERPDLEPQVLFVDGNGILHPRGFGLASHLGVLSGIPTIGVAKTFLHVDGLDARSVKSAMR------DGRLPLVGSSGTEWGVAL--KSTKGS------TNPIYVSVGHRVSLASAETLTAACCRHRVPEPIRQADL 218
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: A0A6A3ZRE1_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3ZRE1_9STRA)

HSP 1 Score: 226 bits (577), Expect = 1.340e-67
Identity = 119/219 (54.34%), Postives = 150/219 (68.49%), Query Frame = 2 
Query:  545 THGRLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIREW 1201
            T  ++L+ V GVDISF+KGS E+ACAS+VVLE+PSL  +YEA+  V++  PYI+GFLAFREV  L +L   LRR RPDL PDV  VDGNG LHP+G GLA H GV+  + TVG+GKTFL VDGLTK  V+  +            L G S  VWG AL         G   V +PV+VS+GH +SL++ V + +A  ++RVPEPIRQAD+RSREVIR+W
Sbjct:   39 TDCKVLKRVAGVDISFLKGSSEHACASIVVLEYPSLSVLYEAFAYVSLPAPYIAGFLAFREVPALTKLYDDLRRRRPDLLPDVTLVDGNGVLHPQGFGLASHFGVLESVPTVGVGKTFLHVDGLTKADVKRLMARAREENHDLVKLAGKSGKVWGAALC--------GTAGVKNPVYVSVGHMLSLDSSVAIAQACSQYRVPEPIRQADLRSREVIRQW 249
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: A0A2P4YA30_9STRA (DNA repair endonuclease (Predicted) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YA30_9STRA)

HSP 1 Score: 222 bits (565), Expect = 7.680e-66
Identity = 116/223 (52.02%), Postives = 149/223 (66.82%), Query Frame = 2 
Query:  533 VTSATHGRLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIREW 1201
            +    +G+ L  V GVDISF+KGS+E+ACAS+VVL+F S   +YEA+  V++  PYI+GFLAFREV  L +L   LRR RPDL PDV  VDGNG LHP+G GLA H GV+  + T+G+GKTFL VDGLTK  V+  +            L G S  VWG AL         G   V +PV+VS+GH +SL+T V + +A  ++R+PEPIRQAD+RSREVIR+W
Sbjct:   39 IDETNNGKALNRVAGVDISFLKGSDEHACASIVVLDFLSQTVLYEAFTYVSLPAPYIAGFLAFREVPALTKLYDDLRRRRPDLLPDVTLVDGNGVLHPQGFGLASHFGVLENIPTIGVGKTFLHVDGLTKPDVKGLMAKAREENHDLVKLTGKSGKVWGAALC--------GTAGVKNPVYVSVGHMLSLDTSVAIAQACSQYRIPEPIRQADLRSREVIRQW 253
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: H3G786_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G786_PHYRM)

HSP 1 Score: 221 bits (562), Expect = 9.470e-66
Identity = 120/225 (53.33%), Postives = 152/225 (67.56%), Query Frame = 2 
Query:  527 AIVTSATHGRLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTS-ETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIRE 1198
            A  +  T+ +LLR V GVD+SF+KGS E+ACAS+VVLE+PSL  +YEA+  V++  PYI+GFLAFREV  L +L   L R RPDL PDV  VDGNG LHP+G GLA H GV+  + T+G+GKTFL VDGLTK  V+  +            L G S + VWG AL         G   V +PV+VS+GH +SL+T V + +A  +FRVPEPIRQAD+RSREVIR+
Sbjct:   26 AAASDDTNCKLLRRVAGVDVSFLKGSNEHACASIVVLEYPSLTVLYEAFTYVSLPAPYIAGFLAFREVPALTKLYEDLCRRRPDLLPDVTLVDGNGVLHPQGFGLASHFGVLESIPTIGVGKTFLHVDGLTKPDVKGMMAKAREENHDLVKLTGKSGKVVWGAALC--------GTAGVKNPVYVSVGHMLSLDTSVAIAQACSKFRVPEPIRQADLRSREVIRQ 242
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: K3WTZ8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WTZ8_GLOUD)

HSP 1 Score: 220 bits (561), Expect = 4.950e-65
Identity = 116/214 (54.21%), Postives = 147/214 (68.69%), Query Frame = 2 
Query:  560 LRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIREW 1201
            L  V GVDISF+KGS E+ACAS+VVL++PSL+ VYEA+  V++  PYI GFLAFREV  L RL   L    P   PD+  VDGNG LHP+G GLA H GV+  + T+G+GKTFL VDGLTK  VR++V A  +  E+   L G S  VWG AL  +          V +PVFVS+GH+VSL++ + + KA  R+R+PEPIRQAD+RSR+VIR W
Sbjct:   54 LERVAGVDISFLKGSNEHACASIVVLQYPSLRVVYEAFTYVSLPAPYIPGFLAFREVPALTRLYEDLVARCPQYVPDITLVDGNGILHPQGFGLASHFGVLMDVPTIGVGKTFLHVDGLTKGDVRQQVAAAKTKHEQVVELQGESSKVWGAALCNQ-------AAGVENPVFVSVGHKVSLDSSLRIVKACSRYRIPEPIRQADLRSRQVIRSW 260
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BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Match: UPI0010A912E6 (endonuclease V n=1 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=UPI0010A912E6)

HSP 1 Score: 219 bits (558), Expect = 1.300e-64
Identity = 122/216 (56.48%), Postives = 149/216 (68.98%), Query Frame = 2 
Query:  560 LRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNHPYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLACHLGVVTGLRTVGLGKTFLQVDGLTKVGV-RERVKALLSAGERETPLLGTSETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFRVPEPIRQADMRSREVIREWL 1204
            LR VGGVD+SFVKG   +ACASLVVL +P L+ VYE    V +  PY+SGFLAFRE   LA  V +LR E P L P V+FVDGNG LH RG G+ACHLGV+TGL  VG+ K  LQVDGL    + +E+++ L + G+   PLLG S TV G AL   E          T+PV+VS+GH++SL+T V LT+A CR RVPEPIRQAD+RSRE IR+ L
Sbjct:   45 LRRVGGVDLSFVKGDGVSACASLVVLGYPELEVVYEECRMVRLTAPYVSGFLAFREAPFLADAVRRLREEEPSLVPQVLFVDGNGLLHHRGFGVACHLGVLTGLPCVGVAKKLLQVDGLENDELHKEKIRELRTGGDA-FPLLGDSGTVLGMALKSHERS--------TNPVYVSVGHKISLDTAVRLTQACCRHRVPEPIRQADIRSREYIRKTL 251
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1400.3125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L317_9PHAE6.720e-19189.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPT4_ECTSI8.130e-15697.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YW13_9STRA2.040e-8159.26Endonuclease V-domain-containing protein n=1 Tax=T... [more]
W2YQG1_PHYPR6.730e-6855.09Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3T1CXH4_9VIRU1.000e-6756.28Endonuclease V n=1 Tax=Acanthamoeba castellanii me... [more]
A0A6A3ZRE1_9STRA1.340e-6754.34Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A2P4YA30_9STRA7.680e-6652.02DNA repair endonuclease (Predicted) n=1 Tax=Phytop... [more]
H3G786_PHYRM9.470e-6653.33Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
K3WTZ8_GLOUD4.950e-6554.21Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
UPI0010A912E61.300e-6456.48endonuclease V n=1 Tax=Ornithorhynchus anatinus Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1400contigEcto-sp13_S_contig1400:5547..11007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score451.1
Seed ortholog evalue4.9e-124
Seed eggNOG ortholog2880.D8LPT4
Preferred nameENDOV
Model size1423
KEGG koko:K21813
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004519,GO:0004520,GO:0004521,GO:0004536,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0016888,GO:0016891,GO:0016893,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0050896,GO:0051716,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901363
Exons6
EggNOG free text desc.endoribonuclease activity, producing 5'-phosphomonoesters
EggNOG OGsCOG1515@1,KOG4417@2759
Ec32 ortholog descriptionEndonuclease V
Ec32 orthologEc-18_002390.1
Cds size1065
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1400.3125.1prot_Ecto-sp13_S_contig1400.3125.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1400 5661..10763 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462748.0196593-UTR-Ecto-sp13_S_contig1400:5546..56601681462748.0196593-UTR-Ecto-sp13_S_contig1400:5546..5660Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1400 5547..5660 -
1681462748.1042533-UTR-Ecto-sp13_S_contig1400:10763..110071681462748.1042533-UTR-Ecto-sp13_S_contig1400:10763..11007Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1400 10764..11007 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462748.0322974-CDS-Ecto-sp13_S_contig1400:5660..58321681462748.0322974-CDS-Ecto-sp13_S_contig1400:5660..5832Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1400 5661..5832 -
1681462748.0418-CDS-Ecto-sp13_S_contig1400:6448..66481681462748.0418-CDS-Ecto-sp13_S_contig1400:6448..6648Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1400 6449..6648 -
1681462748.0519152-CDS-Ecto-sp13_S_contig1400:7163..73241681462748.0519152-CDS-Ecto-sp13_S_contig1400:7163..7324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1400 7164..7324 -
1681462748.066873-CDS-Ecto-sp13_S_contig1400:8007..80561681462748.066873-CDS-Ecto-sp13_S_contig1400:8007..8056Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1400 8008..8056 -
1681462748.0825899-CDS-Ecto-sp13_S_contig1400:8944..93931681462748.0825899-CDS-Ecto-sp13_S_contig1400:8944..9393Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1400 8945..9393 -
1681462748.0931945-CDS-Ecto-sp13_S_contig1400:10729..107631681462748.0931945-CDS-Ecto-sp13_S_contig1400:10729..10763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1400 10730..10763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1400.3125.1

>prot_Ecto-sp13_S_contig1400.3125.1 ID=prot_Ecto-sp13_S_contig1400.3125.1|Name=mRNA_Ecto-sp13_S_contig1400.3125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=355bp
MADEALEERWLEEQTRIARAVVETDDVLWTLDQPPEQNAATARRPTPPPQ
HGQTQTAPKEMPSGAARGTTNSGDGSGGGSGSRDGGPPGIPPPPAIVTSA
THGRLLRLVGGVDISFVKGSEENACASLVVLEFPSLQTVYEAYERVTMNH
PYISGFLAFREVDHLARLVGQLRRERPDLEPDVVFVDGNGRLHPRGAGLA
CHLGVVTGLRTVGLGKTFLQVDGLTKVGVRERVKALLSAGERETPLLGTS
ETVWGTALVPKEEEGKKGGGVVTSPVFVSIGHRVSLETCVVLTKAVCRFR
VPEPIRQADMRSREVIREWLLEQRGKAEGETKEAEKGLPRPPPPPPPPPS
STLS*
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mRNA from alignment at Ecto-sp13_S_contig1400:5547..11007-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1400.3125.1 ID=mRNA_Ecto-sp13_S_contig1400.3125.1|Name=mRNA_Ecto-sp13_S_contig1400.3125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5461bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1400:5547..11007- (Ectocarpus species13 EcNAP12_S_4_19m)
CTTTTTCTATCTCGCTCCAGCTCCCTCTAGCAAGCACACAGGGCACAAGC
TTGTGAGTTGCCGTGTGGTGTTCAAAAATCGCCAAACACGAGTGATTTTT
TGACGGTCGACCTCAGGTAGCTGCAGACCAGCCCCCCCTCCCCGTTCTCC
CCACTTGCAACGGGCACGACAGAGCAGGAAGTTGCTTGTTGCTTCGGGGG
GGAAGGGAGAAACGATCTACGTGCGGCAGCGGCGGGTGGAGGGTATGGCC
GACGAGGCCCTTGAAGAGCGTTGGCTCGGTGAGACTTGTACGCAGAGCCG
TTGTTTCTTGACCTGCCTACGATTTTTCGAGGAAAAAAAATTGTTTGTTG
GTTGTTGGACCAACCACCACAACTACGATGTGTGTTACCGCTGGTGATAG
CCTCATGTCTGCAGAGCTGATGAGAGGGCACTTGATTGCTCCGGAGACCT
CGCTAATTTTATTGCAGATGAGCATCACAGGATACGTGCTTCGACTACAA
CGCTTTTGACCCTTTACTTGTCCAAGTCGAAATCTCTCTATGTAATAGGG
TCGTCTCGTGTCGCTCTTGTTTTCTCGTGAGAGAGACACTTAAAAATAGA
GAAGCGGAGACGAGAGGAAAACAACAGAGGACCCGCATCAGGCAAGCCAA
GTGAGTGAGTAGGTACTACGCCAGACGGGTAACTGCTGTAGACGGGTAAC
ATCCGTACGCCAGATGCTACATCTACATAGAAGAGCGTGGTGACTTGCAA
CGGTTATGAGGCGGGTGATGGTCTGCGAGCAAAACACCAAAGGTGACATG
CCGATAACGTGCAGCAGCAACAGCAAGGTCGGTCGGTGCTGCTGTTGATT
CGGTATTCTATCTATACGCAGATCATCCTGGATCCTTGCAACTACCCGAT
GTGGGATGTTCTCAAAAGTCGACGTAATAAAATTCGCGAAACATGCGGCA
CTCGCCTTATGCATACAATATTGCCGACGAGGAGTGGGGGGAGGTGCCAC
ATCTGGCACACACACATCATGCCCGCGAGTGTGTGTTATTTGTTGCTCGG
CGGCATGGAATGATGGATTGATTCCCTGTGCATGCATGTAACACCAGTCT
TCGTTCGTCCATCCACGGTGCTGTACGGCTGTACATGAAAATTGAAAATT
GTGCCGTGGGTGACACCTTCGTCCGTCTGTATGGTTGTGCATCATAGTTG
TGCACATGGTTGTGTATTCATGCACCATGTTGGCCGTAAGCTTACAGCAG
TGCTACCTAAAAATGCTGCTTACAAGATACCAGGAACGTGAGCAGTGCAG
CTTGTTGTATGCATGACGCCTTGGGTGCATTGACACCTCCTCCGGGCTTG
TTTGCCGGCCGAAGGGCCGCAAAACGACAAGAGCAGCTATGTTTTTCTTT
GTTTTGAATTGACCGCCCTAGCCGGCTTACCATTTCTTGTGCGTGTGTTT
TTGCTGTTGTTGTTGTTTTGTTGTTGTTTTCACAGCGTGTTAGATACCCA
ATTCTAAAAGTATAACGCCGTTACATCAATGGCCTAACATAAGCACGCGT
CATCCCCCCACCCACCAACCCTGTCCCGCCCCCCCCCGGTACACACCGCT
GAAACTAAACCCAGAGGAGCAGACCCGGATAGCGCGAGCCGTCGTCGAAA
CCGACGATGTACTCTGGACACTGGACCAACCCCCGGAACAAAATGCCGCC
ACCGCCCGCCGCCCAACACCGCCGCCGCAACATGGGCAGACCCAGACCGC
ACCAAAAGAGATGCCATCCGGAGCAGCAAGAGGAACGACGAATAGCGGCG
ACGGCAGCGGCGGCGGCAGTGGAAGCAGGGACGGCGGTCCTCCCGGAATA
CCCCCGCCTCCGGCGATCGTGACTAGCGCTACGCATGGTCGGTTGCTGCG
GTTGGTTGGGGGCGTGGACATCTCTTTCGTCAAGGGGAGCGAGGAGAACG
CCTGCGCGAGCCTGGTGGTCCTTGAGTTCCCCTCGCTGCAGACGGTGTAC
GAGGCGTACGAGAGGGTGACGATGAACCACCCTTACATATCCGGCTTCCT
GGCGTTTCGAGAGGTGCGCTTGACGGAAACATCTTGTGTGCTTTGTTCAG
CAGCCTAAGCCATACCGTTGGACTGGCTGACTAGTCTAAACGTTTGATTT
TGACTTGCAGACTTCAGGTTTGATTTCGGCTACTGTACAATATATTCGTG
GGGGACAGGAAACTCAGACCTTTCTTTTTGTGTTGTTGCTCCTTGTATGT
CAAACGCCAAGATCTTACGCTGCATTGACATGTAGTTAATGATTGACTTG
AAGGCCTGTCTTGCTGTGTTGGACGTTCCGTTCCGGATGGCCACCCCAAC
GGATTCCGTGTGTTTAGACCATGAACGGCTGCGGCACCGTCTTCGACACA
TATACAGAAGTAGAACCCTTACACCAGGGGTTATTTGCCGCGGCATGCTT
GGGGGGGGGGGCGTACCCATGCATAAACGCATGCCGTAGTCGTTGGGCCA
GTTCCCTCGCATCCCTACAATGCCGGGACGAAGCGAGATGCCGGGTTTTC
ACCGGCCCAGTCTACGTTTCAAAAGGATGAACGATCATCGTCCTTGCGTT
TGGTGTGCCAAACCATATATGTCATGGGTTGATTGGGCATCCCGGCTTGC
TAAACATTTTGTATTCGGTAGGCACGACAATATTTCAAGTACCGATTGGG
GGCGGGGAGGGGGTTCCGAGATGGTGGGGAAGGCGTTGCAGGACCTCCCC
TTTGTTGAGCAGTCTAAGTCCGGTTTGACTCAGGAACGAGAGACGTCGCG
CGCGTCGGCCCGGATTGATTGGGGGCTAGACAAGGATTTACTGGTTCACG
TGCCCCAACGACGCACTACACGCGCGTCATGCGACCTGTTCTCCCCGGGA
GTACACGAAGATCACATTGTTGTACACAATGCCTCCTTTTCGCCGTTGCA
GGTGGACCACCTGGCGCGTTTGGTTGGCCAGCTTAGGCGGGAACGTCCAG
GTGTGACGGTGAGGGGCGAGCCGGAAGGAACGGGCGGCTAGTTTTGTACG
TGCCCCGTGCTTATCAACGTCGCCGTCATAGGGCAGGATGTTGACGTGAT
ATATCTATGATCAGATGGTGTATCCCGGTAGTTTAATCCTCGCTGTTCAC
GAGTTATTACGGCAAGAGATGTAACGGTATTCCCCCTACTTCGCTTGCTC
TTCCATTCTCCATTCTCCTTGTCTTCTTTTAGCGTAGTAGCGCTCGCAGC
ATGTTTCCCCTGCCTCGTACCAGATCCAGCGCGGTAGTACTACGCACCGC
CTGGCGGTTTTACACTCACACAGACAGATCATTGCCTGTGTTTCTCCGAT
GTGTCCGCCATGTGTTCGCATCCTGGTCCCGTTTTGCTGCATGTATGCAT
GCTAACGCTACGTCGAGGTCAACAATGGTTTACAGAGGGGGTCCCTGTTT
AGTGCCGATATGCGCCCACAAAACCGACCAGCACTATACCGGACCGGCAC
CATTCAAAGTACTGGCAATGACTTGGAAATTAATTCAGTGTGTGCCCGCC
GAAAACACCGGCATTAAACAGGGACGACCCCCTCTGTTTGGTGCAAATTA
TTTGGCTTTCGTTTTCCTTCAAACTTGAACTTTGATTTCTTGCTTTTGTC
GATTTTTTTCTGCCCTGTCTTGCCGACAAAAAGACTTGGAGCCCGACGTG
GTGTTCGTCGACGGCAACGGGCGGCTTCACCCCAGGGGGGCGGGGCTGGC
GTGCCACCTGGGCGTGGTCACGGGGCTCCGCACGGTGGGGCTGGGCAAGA
CATTCCTGCAAGTCGACGGGTTAACCAAGGTCGGCGTGCGAGAGGTGAGC
GCTTTCAGTGAAGCACCGTTGTACCTAAGTTTGTACTTTGGACGTCGGCA
TACGATGCGACAGATGCGGCGTGCAGGCTCACGGTCGGCGTGCGAGAGGT
TAGCTCTCTCGCTCAATCAAGTGTATCATTGTTCCTAGGTAACGTTTTAG
CTCGATTTACGAATATGATTCAAAATAGAGGACGAACGCGCGTGCAATAC
AATTGTATCCTGATTTGGATTGGTTGTTTTACCACACACCGGCCGCGACT
GCCCGGTATTTCGGTCTCTCCATTGTTTTCTCTTCCGGGTTTAATAATGG
TTTTACCGTACCGCGAGCGTCAGCCTACGATGGCGAATCTACCGTAGTCA
CATGCACACAATCTAGAGAGCGTTTTCGCGTTTTTCATGTTCCGCTTAAG
GACTGAAGTTTTTTCATTGGCCAGTCGTAAGCGCGGTCGATGCTATCGAA
AGGAACACACCCAACACAGACATGATTCGCACACACCACCGTCCTCCCTC
GCGTCGCAGCGTGTCAAGGCCTTGCTCTCGGCGGGGGAGCGGGAAACACC
TCTTTTGGGGACCTCTGAAACGGTCTGGGGAACGGCGCTCGTGCCCAAGG
AGGAGGAAGGGAAGAAGGGCGGCGGTGTGGTGACCAGCCCGGTCTTCGTC
TCGATCGGACACAGGGTTTCCTTGGAGACTTGCGTGGTCTTGACCAAGGC
CGTCTGCAGGTAATAAACACGTTGACATGGCACCCATCCTCGTCGTGCTT
GTGGTCGGCCCATGTCGTCGTCCTCTTGTTTCGCCTGGAATGCACGATCC
ATCATCTCTTCATTCTGTTGTTTCTTCTGAGAGGACTCTGCGTGACGAAA
CAAACAGCCATATCGCTGTCGCTGCCTCAGCGTCAAGATGGTTCTTACAC
GGTACCTCGATCGCCTCTGGCATGGCTCCGTCGTAAACAGTGACTCATCC
CGCAGACACAATAATTAAAGTGCCGTGGGCATAAACATGCTCGCACGAGC
GTTTCCAACTGCATCAGAAACGATTCATACTTTTTAAAAAAGCACCTTGT
TTTCTCTCGACAAAGTCGGTTGTGAAAATTTTGCGACGTGGCGCTTTGCT
ACTTCACAAGCATTATTTCTGGCCGACTTTTTAAGCGTGTGTGGTTTGTG
GCGTTATCGCGGTGCAGTTCCCTCGTACTTTCAGTCAGCACCTCGTTACA
TTATGAGCGCCATCATTCCTGTTCCGCATGGCTGCTGCGCAATCGCGCCC
GCGAACGTAGCGCAGATCTGAAGCCTCCATTTGAGATTCTTGTTTCCTTG
CGACCGCGCGTGCGATGCGAATCAGGTTCCGCGTCCCAGAGCCCATCCGG
CAAGCCGACATGCGCAGCAGAGAAGTTATCCGGGAGTGGCTGCTTGAGCA
GCGAGGAAAGGCTGAGGGAGAGACAAAGGAGGCCGAAAAGGGGCTGCCGC
GACCACCACCACCACCACCACCACCACCATCGTCGACCTTGTCATGAAAC
GATTGACAAGAAGGGTCCACAGATGTGAATTGATGTCCCCCCCCTGTCAT
GTCACCGCAGACAAAATATGAGAGAGAAGTTGATGCTTGAACGCCATACG
GTTTTGCAACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1400:5547..11007-

>mRNA_Ecto-sp13_S_contig1400.3125.1 ID=mRNA_Ecto-sp13_S_contig1400.3125.1|Name=mRNA_Ecto-sp13_S_contig1400.3125.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1065bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1400:5547..11007- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGACGAGGCCCTTGAAGAGCGTTGGCTCGAGGAGCAGACCCGGAT
AGCGCGAGCCGTCGTCGAAACCGACGATGTACTCTGGACACTGGACCAAC
CCCCGGAACAAAATGCCGCCACCGCCCGCCGCCCAACACCGCCGCCGCAA
CATGGGCAGACCCAGACCGCACCAAAAGAGATGCCATCCGGAGCAGCAAG
AGGAACGACGAATAGCGGCGACGGCAGCGGCGGCGGCAGTGGAAGCAGGG
ACGGCGGTCCTCCCGGAATACCCCCGCCTCCGGCGATCGTGACTAGCGCT
ACGCATGGTCGGTTGCTGCGGTTGGTTGGGGGCGTGGACATCTCTTTCGT
CAAGGGGAGCGAGGAGAACGCCTGCGCGAGCCTGGTGGTCCTTGAGTTCC
CCTCGCTGCAGACGGTGTACGAGGCGTACGAGAGGGTGACGATGAACCAC
CCTTACATATCCGGCTTCCTGGCGTTTCGAGAGGTGGACCACCTGGCGCG
TTTGGTTGGCCAGCTTAGGCGGGAACGTCCAGACTTGGAGCCCGACGTGG
TGTTCGTCGACGGCAACGGGCGGCTTCACCCCAGGGGGGCGGGGCTGGCG
TGCCACCTGGGCGTGGTCACGGGGCTCCGCACGGTGGGGCTGGGCAAGAC
ATTCCTGCAAGTCGACGGGTTAACCAAGGTCGGCGTGCGAGAGCGTGTCA
AGGCCTTGCTCTCGGCGGGGGAGCGGGAAACACCTCTTTTGGGGACCTCT
GAAACGGTCTGGGGAACGGCGCTCGTGCCCAAGGAGGAGGAAGGGAAGAA
GGGCGGCGGTGTGGTGACCAGCCCGGTCTTCGTCTCGATCGGACACAGGG
TTTCCTTGGAGACTTGCGTGGTCTTGACCAAGGCCGTCTGCAGGTTCCGC
GTCCCAGAGCCCATCCGGCAAGCCGACATGCGCAGCAGAGAAGTTATCCG
GGAGTGGCTGCTTGAGCAGCGAGGAAAGGCTGAGGGAGAGACAAAGGAGG
CCGAAAAGGGGCTGCCGCGACCACCACCACCACCACCACCACCACCATCG
TCGACCTTGTCATGA
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