mRNA_Ecto-sp13_S_contig14.3123.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig14.3123.1
Unique NamemRNA_Ecto-sp13_S_contig14.3123.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig14.3123.1 vs. uniprot
Match: A0A6H5JBT2_9PHAE (PS_pyruv_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT2_9PHAE)

HSP 1 Score: 1257 bits (3253), Expect = 0.000e+0
Identity = 661/725 (91.17%), Postives = 677/725 (93.38%), Query Frame = 1
Query:    1 GDTDTKPLCFVLPSAMKENLQELHQIFSSKIVVKDDILLNVFPKHQKEIEAYPYPTRVEEILDPDHFAKRLCDCGAVVASRLHGAILALQAGVPTIAAWPAAEGNKVPDLMRDVMRLRDQFVLIDDSTTRRDLDTRIKKLRDDYSAGRRSRVFDKLEFVALHTQHECAHMLSSVAHLQLSPEVASRRRPSFGGFWEEMERTNDSQGEETEGEVRVAEQTEEGGGGSSLTLGAVSRRHGGTESSWMRLGRAWGPDGTTLAPTLIGEEIPFARNMHVVWIALAMIALLGLPGLAYRSRIELEAHRGAVAFD-KI--PELPEEGMEPSTFSKARVCGSCSRWSPVRLQDVAFFGLNFFLWVFLSFGFSICTKTYMRETGNPVALLAIQGWVGVGVLCATNLAAWVRRRGCSSQPASYSPASSIATSPDSCLSPSVSSSSPSFLPVPFPTSSEPEWVGNCGLREARRLGRGVWQAGMLHSANALLTSWSVLVGGVAATHALKALEPAVAAGFSRWLLGSSLPPGRAAAVAIIVLGLGILMIPVHLRRWVKGSDDESSDGEGGGAGALMGTGQGVAFAAVISACAXXAIVLRNVLLKXXXXXXXSPPLGLLACSIVGAVIGSMALLVPWLPFSWEWAGESLLRTSGVNAALCSAGYNLASFNLLSELTPVGHAVGNAGKRVLLFTSGLFLLGEAGPMSSRQLAGMSVAFFGFSAYNFVGSSVTSASLSSR 2166
            GDTDTKPLCFVLPSAMKENLQELHQIFSSKIV KDD+LLNVFPKHQ+EIEAYPYPTRVEEILDPDHFAKRLCDCGAVVASRLHGAILALQAGVPTIAAWPAAEGNKVPDLMRDVMRLRDQFVLI++STTRRDLDTRIKKLRDDYSAGRRS VFDKLEFVALHTQHECAHMLS VAHLQL+PEVASRRRPSFGGFWEEM+RTNDSQGE TEGEVRVAEQTEEGG GSSL LGAVSRRHGGTES WMRLGRAWGPDGTTLAPTL GEE+PFARN +V WIALAMIALLGLPGLAYRSR ELEAHRGA AFD K+  P LPEEGMEPSTFSKARVCGSC RWSPVR QDVAFFGLN+FLWVFL  GFSICTKTYMRETGNPVALLAIQGWVGVGVLCATNLAAW+RRRGCSSQPASYSPASSIATSPDSCLSPSVSS SPSFLPVPFPT SEPEWVGNCGLREARRLG+GVWQAGMLHSANALLTSWSVLVGGVAATHALKALEPAVAAGFSRWLLGSSLPPGR AAVAIIVLGLGILMIPV++RRW +GSDDESSD EGG AGALMGTGQGVAF AVISACA  A+        XXXXXXX   LGLLACSIVGAVIGS ALLVPWLPFSWEWAGESLLRTSGVNAALCSAGYNLASFNLLSELTPVGHAVGNAGKR  LFTSGLFLLGEAG MSSRQLAGMS AF GFSAYN V SSVTSASLSSR
Sbjct:  233 GDTDTKPLCFVLPSAMKENLQELHQIFSSKIVGKDDVLLNVFPKHQEEIEAYPYPTRVEEILDPDHFAKRLCDCGAVVASRLHGAILALQAGVPTIAAWPAAEGNKVPDLMRDVMRLRDQFVLINNSTTRRDLDTRIKKLRDDYSAGRRSLVFDKLEFVALHTQHECAHMLSGVAHLQLTPEVASRRRPSFGGFWEEMKRTNDSQGE-TEGEVRVAEQTEEGGRGSSLKLGAVSRRHGGTESLWMRLGRAWGPDGTTLAPTLTGEELPFARNTYVAWIALAMIALLGLPGLAYRSRTELEAHRGAAAFDMKVEGPGLPEEGMEPSTFSKARVCGSCCRWSPVRSQDVAFFGLNYFLWVFLCLGFSICTKTYMRETGNPVALLAIQGWVGVGVLCATNLAAWLRRRGCSSQPASYSPASSIATSPDSCLSPSVSSPSPSFLPVPFPTPSEPEWVGNCGLREARRLGQGVWQAGMLHSANALLTSWSVLVGGVAATHALKALEPAVAAGFSRWLLGSSLPPGRTAAVAIIVLGLGILMIPVNIRRWARGSDDESSDVEGGEAGALMGTGQGVAFPAVISACACCAVXXXXXXXXXXXXXXXXXXLGLLACSIVGAVIGSTALLVPWLPFSWEWAGESLLRTSGVNAALCSAGYNLASFNLLSELTPVGHAVGNAGKRFFLFTSGLFLLGEAGAMSSRQLAGMSFAFVGFSAYNLVESSVTSASLSSR 956          
BLAST of mRNA_Ecto-sp13_S_contig14.3123.1 vs. uniprot
Match: D7FID7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FID7_ECTSI)

HSP 1 Score: 276 bits (707), Expect = 1.930e-77
Identity = 257/788 (32.61%), Postives = 361/788 (45.81%), Query Frame = 1
Query:    1 GDTDTKPLCFVLPSAMKENLQELHQIFSSKIVVKDDILLNVFPKHQKEIEAYPYPTRVEEILDPDHFAKRLCDCGAVVASRLHGAILALQAGVPTIAAWPAAEGNKVPDLMRDVMRLRDQFVLIDDSTTRRDLDTRIKKLRDDYSAG-RRSRVFDKL-----EFVALHTQHECAHMLSSVAHLQLSPEVASRRRPSFGGFWEEMERTNDSQGEETEGEVRVAEQTEEGGGGSSLTLGAVSRRHGGTESSWMRLGRAWGPDGTTLAPTLIGEEIPFARNMHVV---WIALAMIALLGLPGLAYRSR--------IELEAHRGAVAFDKIPELPEEGMEPSTFSKARV-------CGSCSRWSPVRLQDVAF--------------------------------FGLNFFLWVFLSFGFSICTKTYMRETGNPVALLAIQGWVGVGVLCATNLAAWVRRRGCSSQPASYSPASSIATSPDSCLSPSVSSSSPSFLPVPFPTSSEPEWVGNCGLREARRLGRGVWQAGMLHSANALLTSWSVLVGGVAATHALKALEPAVAAGFSRWLLGSSLPPGRAAAVAIIVLGLGILMIPVHLRRWVKGSDDESSDGEGGGAGALMGTGQGVAFAAVISACAXXAIVLRNVLLKXXXXXXXSPPLGLLACSIVGAVIGSMAL--------------------LVPWLPFSWEWAGESLLRTSGVNAALCSAGYNLASFNLLSELTPVGHAVGNAGKRVLLFTSGLFLLGEAGPMSSRQLAGMSVAFFGFSAYNFVGS 2136
            GD D +PLCFV+P+A  ++  E+H+   +  V + D  +NVFPKHQKEIE + YP  VE+I+DP  + ++LC+C A++++RLHG +L L  GVPT AA+    GNKVPD+M   M L DQF+ ID+   R  ++  + ++R  Y  G RR+ + D+L     EF+ +H +H    +L    H Q                          QG +    V+ A Q + G       + A +  +G T + W               P+   + +P +  +  V   ++  A+IAL  LP      R        ++ +A  G    DK   +   GMEP+   KA         CG     SP   +D                                   F LNF LW+ L+  FS  +K+Y+R+T +PV LL +QG VGV VLCA        R G             +  + +     SVS      L  PF TS                  R    A +LH+  A LTS+SV VGGVA T ALKA EP  A  FS  +LG ++   + A++A+I+ G+ +L           G+  E+++ EGG           V  AA+ +  A     LRNVL+K        P   LLACS+  A IG   +                    +V     + E  G S L   GVNAALC  GYNLASFNLL++L+PVGHAVGN+ KRV++F SG+ L+GE   M+ RQL G +VA  G   YN VGS
Sbjct:  227 GD-DQQPLCFVVPAANTQDTIEMHEHLLNA-VREGDRFINVFPKHQKEIEKFAYPGAVEQIVDPMEYVEQLCNCKAIISTRLHGVVLGLHMGVPTFAAFRLPSGNKVPDVMARAMSLPDQFLQIDEDLDRDLVNAAVSRVRQLYEEGDRRAVIHDRLSALHDEFI-VHARHVLVDVLGVGDHHQ------------------------QQQGPDVVTSVQHA-QIDNGLLAPQAAVSAAAALNG-TPAEWS-------------VPSWSHKMMPASVRLDCVAALFLLFAIIALAALPSKTGGGRGGGRSPRVLKSDAANG----DKKGLIAVSGMEPA-LGKATAHQEMEEHCGMTDAASPSSFRDSELGSRDSLSPAQRSPATKQSGFPATKKGPSLNFLFALNFILWIALAVAFSRYSKSYLRDTQDPVGLLVLQGSVGVVVLCALG------RLG-------------LGATDEGRAGGSVSVLGQ--LVQPFATS------------------RLAGLAAILHTCQAFLTSFSVFVGGVAVTSALKATEPVAAVAFSHLILGKTVHRIKLASLAVIMAGIVLLTTKSTA---TAGTAHEAAE-EGGATPHSP-----VVLAAMFTMAAVCCNALRNVLIKKGDPVP--PHQTLLACSLAAAAIGVSLMAFRVVMRSMDDLLLGPAPGGVVEAADAAREGNGASWLSMEGVNAALCFVGYNLASFNLLAQLSPVGHAVGNSVKRVVMFGSGILLMGEV--MTGRQLGGTAVALTGVLVYNLVGS 915          
BLAST of mRNA_Ecto-sp13_S_contig14.3123.1 vs. uniprot
Match: A0A6H5JM00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM00_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 1.530e-76
Identity = 252/785 (32.10%), Postives = 357/785 (45.48%), Query Frame = 1
Query:    1 GDTDTKPLCFVLPSAMKENLQELHQIFSSKIVVKDDILLNVFPKHQKEIEAYPYPTRVEEILDPDHFAKRLCDCGAVVASRLHGAILALQAGVPTIAAWPAAEGNKVPDLMRDVMRLRDQFVLIDDSTTRRDLDTRIKKLRDDYSAG-RRSRVFDKL-----EFVALHTQHECAHMLS--SVAHLQLSPEVASRRRPSFGGFWEEMERTNDSQGEETEGEVRVAEQTEEGGGGSSLTLGAVSRRHGGTESSWMRLGRAWGPDGTTLAPTLIGEEIPFARNMHVVWIALAMIALLGLPGLAYRS-------RIELEAHRGAVAFDKIPELPEEGMEPSTF----------------------SKARVCGSCSRWSPVRLQDVA----------------FFGLNFFLWVFLSFGFSICTKTYMRETGNPVALLAIQGWVGVGVLCATNLAAWVRRRGCSSQPASYSPASSIATSPDSCLSPSVSSSSPSFLPVPFPTSSEPEWVGNCGLREARRLGRGVWQAGMLHSANALLTSWSVLVGGVAATHALKALEPAVAAGFSRWLLGSSLPPGRAAAVAIIVLGLGILMIPVHLRRWVKGSDDESSDGEGGGAGALMGTGQGVAFAAVISACAXXAIVLRNVLLKXXXXXXXSPPLGLLACSIVGAVIGSMAL--------------------LVPWLPFSWEWAGESLLRTSGVNAALCSAGYNLASFNLLSELTPVGHAVGNAGKRVLLFTSGLFLLGEAGPMSSRQLAGMSVAFFGFSAYNFVGS 2136
            GD D +PLCFV+P+A  E+  E+H+ +    V + D  +NVFPKHQKEIE + YP  VE+I+DP  + ++LC C A++++RLHG +L L  GVPT AA+  + GNKVPD+M   M L DQF+ ID++  R  ++  + ++R  Y  G RR+ + D+L     EF+ +H +H    +L        Q  P+VA+                           V+ A Q + G     + +GA +  +G                    AP+   + +P    +      L + A++GL  L  ++       R        A   DK   +   GMEP+ +                      S+    GS    SP +    A                 F LNF LW+ L+  FS  +K+Y+R+T +PV LL +QG VGV VLCA          G + +  +    S +                   L  PF  S                  R V  A +LH+  ALLTS+SV VGGVA T ALKA EP  A   S ++LG ++   + A++A+I+ G+ +L       +   G+  E++D EGG           V  AA+ +  A     LRNVL+K        P   LLACS   A IG   +                    +V     + E  G S L   GVNAALC  GYNLASFNLL++L+PVGHAVGN+ KRVL+F SG+ L+GE   M+ RQL G +VA  G   YN  GS
Sbjct:  236 GD-DQQPLCFVVPAANTEDTIEMHE-YLLNAVRQGDRFINVFPKHQKEIEKFAYPGPVEQIVDPTEYVEQLCTCKAIISTRLHGVVLGLHMGVPTFAAFRFSSGNKVPDVMARAMSLPDQFLQIDENLNRELVNAAVSRVRLFYEEGDRRAVIHDRLSVFHDEFL-VHARHVFVDVLGVGDQQQQQQGPDVATA--------------------------VQHA-QIDNGLPAPQVAVGAAAALNG--------------TPAERSAPSWSHQMMPAPVGLDCGAALLLLFAIVGLAALPPKTGGGRGGGRSPRVLKSDAANGDKKGLVAVSGMEPALWKATAHQEMEEYSGMTDAVSPSSSRDSELGSRDSLSPAQRSPGAKPSGFPATKTGPPFNLLFALNFTLWIALAVAFSSYSKSYLRDTQDPVGLLVLQGSVGVVVLCALGRLG----SGATDEGRAGGSVSVLGQ-----------------LMQPFAAS------------------RLVGLAAILHTCQALLTSFSVFVGGVAVTSALKATEPVAAVALSYFILGKTVHRVKLASLAVIMAGIVLLTTK---SKSAAGTAREAAD-EGGATPHSP-----VVLAAMFTMAAVCCNALRNVLIKKGDPVP--PRQTLLACSSAAAAIGLSLIALRVVMRSMDDLLLGPAPGGVVDAADAAREGNGASWLSMEGVNAALCFVGYNLASFNLLAQLSPVGHAVGNSVKRVLMFGSGILLMGEV--MTGRQLGGTAVALTGVLVYNLAGS 924          
BLAST of mRNA_Ecto-sp13_S_contig14.3123.1 vs. uniprot
Match: D8LG31_ECTSI (Putative phosphate/phosphoenolpyruvate translocator protein (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG31_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 6.780e-42
Identity = 135/400 (33.75%), Postives = 190/400 (47.50%), Query Frame = 1
Query: 1039 FGLNFFLWVFLSFGFSICTKTYMRETGNPVALLAIQGWVGVGVLCATNLAAWVRRRGCSSQPASYSPASSIATSPDSCLSPSVSSSSPSFLPVPFPTSSEPEWVGNCGLREARRLGRGVWQAGMLHSANALLTSWSVLVGGVAATHALKALEPAVAAGFSRWLLGSSLPPGRAAAVAIIVLGLGILMIPVHLRRWVKGSDDESSDGEGGGAGALMGTGQGVAFAAVISACAXXAIVLRNVLLKXXXXXXXSPPLGLLACSIVGAVIGSMALLVPWLPFSWE---------------WAGE--------------------SLLRTSGVNAALCSAGYNLASFNLLSELTPVGHAVGNAGKRVLLFTSGLFLLGEAGPMSSRQLAGMSVAFFGFSAYNFVG 2133
            F LNFFLW+ L+  FS  +K Y+R+T +P+ LL +QG  GV VLC+                                            L  P   S+    +    +  +RR G     A +LH+  A+LT++SV VGGVAAT+ALKA+EP  AA FS +LLG S+P  + A+ A+IV G+ +L    +  +  +G    ++ G GG A  ++        +A+ +  A     LRNV++K        P   LLACS   A +G   +++ ++  S +                 GE                    S L   GVNAALC  GYN ASFNLL+ L+PVGHAVGN+ KRV++F SG+  LGE   M+ RQL G ++A  G   YN  G
Sbjct:  153 FVLNFFLWIGLAVTFSAYSKRYLRDTHDPIGLLVLQGVTGVVVLCS--------------------------------------------LGQPSVNSAGLRGIAEQVVAASRRSGI----AAVLHTGQAVLTNFSVFVGGVAATNALKAMEPVAAAAFSYFLLGKSVPLTKMASFALIVGGILLLTSKSNGGKSRQGEGHGATSGGGGAASPIL-------VSAIFTVAAVCFNALRNVVIKGRDPIP--PHQTLLACSSAAAAVGITVMVLRFMMRSMDDLLLGPEEVVQVATGVVGEAAQSAGGAAVTAVDGRHQYSSWLSMDGVNAALCFVGYNFASFNLLASLSPVGHAVGNSVKRVVMFGSGILFLGEV--MTGRQLGGTAIALSGVVVYNIAG 493          
BLAST of mRNA_Ecto-sp13_S_contig14.3123.1 vs. uniprot
Match: D7FQC2_ECTSI (Putative phosphate/phosphoenolpyruvate translocator protein (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQC2_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 2.100e-36
Identity = 137/379 (36.15%), Postives = 173/379 (45.65%), Query Frame = 1
Query: 1039 FGLNFFLWVFLSFGFSICTKTYMRETGNPVALLAIQGWVGVGVLCATNLAAWVRRRGCSSQPASYSPASSIATSPDSCLSPSVSSSSPSFLPVPFPTSSEPEWVGNCGLREARRLGRGVWQAGMLHSANALLTSWSVLVGGVAATHALKALEPAVAAGFSRWLLGSSLPPGRAAAVAIIVLGLGILMIPVHLRRWVKGSDDESSDGEGGGAGALMGTGQGVAFAAVISACAXXAIVLRNVLLKXXXXXXXSPPLGLLACSIVGAVIG-SMALLVPWLPF-------------SWEWAGESLLRTSGVNAALCSAGYNLASFNLLSELTPVGHAVGNAGKRVLLFTSGLFLLGEAGPMSSRQLAGMSVAFFGFSAYNFVG 2133
            F LNF  WV L+ GFS   K Y+R+T +PV LL +QG VGV VLC+        R G                                 L +       P    + GL            A +LH+  ALLT+++V  GGVA T+ LKA+EP  AA FS +LLG      R  A+A IV G+ +L            S D ++ G       ++        +AV +  A     LRNV++K        P   LLACS    V+G  + LL   L               S    G    R  GVNAALC  GYNLASFNLL  L+PVGHAVGN+ KR+L+F +GL  LGE   M+ RQL G +VA FG  AYN  G
Sbjct:  887 FMLNFAGWVSLAIGFSGYGKAYLRDTRDPVGLLVLQGAVGVVVLCSLG------RVG--------------------------------ILDLSAGKGMTPSAARHAGL------------AALLHTGQALLTNFAVFSGGVAMTNGLKAMEPVAAAVFSYFLLGKKCSAPRVVALATIVAGISLLT-----------SKDNNNTGSSSDNDYVL-------VSAVFTMAAVCVNALRNVVIKKGDPIP--PHHSLLACSGAATVVGVGLMLLRSGLLALGDHDQENGQSINSGRDPGAGWFRMGGVNAALCFVGYNLASFNLLVRLSPVGHAVGNSCKRMLVFATGLLFLGEV--MTVRQLGGTAVALFGVLAYNIAG 1193          
BLAST of mRNA_Ecto-sp13_S_contig14.3123.1 vs. uniprot
Match: A0A6H5K4R1_9PHAE (PS_pyruv_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K4R1_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 5.970e-31
Identity = 82/219 (37.44%), Postives = 126/219 (57.53%), Query Frame = 1
Query:   16 KPLCFVLPSAMKENLQELHQIFSSKIVVKDDILLNVFPKHQKEI-EAYPYPTRVEEILDPDHFAKRLCDCGAVVASRLHGAILALQAGVPTIAAWPAAEGNKVPDLMRDVMRLRDQFVLIDDSTTRRDLDTRIKK---LRDDYSAGRRSRVFDKLEFVALHTQHECAHMLSSVAHLQLSPEVASRRRPSFGGFW----EEMERTNDSQGEETEGEVRVA 648
            +PLCF+LP+A    L  +HQ     +V + D+ +NVFPKHQ EI + + YP +V ++LDP+ +++RLC C A++++RLHGAIL L  GVPT   +   EGNKVPDLM DVM+L DQF +I+++ +R  +D R++    L +D   G R+ +  KL            H+L  V  +Q   + +   +    GF     +   R N ++  +T+GE   A
Sbjct:  269 QPLCFILPAANTGVLMAMHQHLLDNVVQRGDVFVNVFPKHQDEIVKNFDYPGKVHQMLDPNEYSRRLCACKAIISTRLHGAILGLHMGVPTFGMFRVPEGNKVPDLMIDVMQLPDQFFVINETLSRGFVDERVETVVGLYNDIHRGHRASIHAKLASFTDDFLVHARHVLFDVIGVQ---DPSKNTQSKDDGFLLNENQHRRRRNSAKRRKTQGEAGPA 484          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig14.3123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JBT2_9PHAE0.000e+091.17PS_pyruv_trans domain-containing protein n=1 Tax=E... [more]
D7FID7_ECTSI1.930e-7732.61Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
A0A6H5JM00_9PHAE1.530e-7632.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG31_ECTSI6.780e-4233.75Putative phosphate/phosphoenolpyruvate translocato... [more]
D7FQC2_ECTSI2.100e-3636.15Putative phosphate/phosphoenolpyruvate translocato... [more]
A0A6H5K4R1_9PHAE5.970e-3137.44PS_pyruv_trans domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig14contigEcto-sp13_S_contig14:58369..60537 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score284.3
Seed ortholog evalue1.6e-73
Seed eggNOG ortholog2880.D7FID7
Model size2169
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-12_007870.1
Cds size2169
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462747.8688567-CDS-Ecto-sp13_S_contig14:58368..605371681462747.8688567-CDS-Ecto-sp13_S_contig14:58368..60537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig14 58369..60537 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig14.3123.1prot_Ecto-sp13_S_contig14.3123.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig14 58369..60537 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig14.3123.1

>prot_Ecto-sp13_S_contig14.3123.1 ID=prot_Ecto-sp13_S_contig14.3123.1|Name=mRNA_Ecto-sp13_S_contig14.3123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=723bp
GDTDTKPLCFVLPSAMKENLQELHQIFSSKIVVKDDILLNVFPKHQKEIE
AYPYPTRVEEILDPDHFAKRLCDCGAVVASRLHGAILALQAGVPTIAAWP
AAEGNKVPDLMRDVMRLRDQFVLIDDSTTRRDLDTRIKKLRDDYSAGRRS
RVFDKLEFVALHTQHECAHMLSSVAHLQLSPEVASRRRPSFGGFWEEMER
TNDSQGEETEGEVRVAEQTEEGGGGSSLTLGAVSRRHGGTESSWMRLGRA
WGPDGTTLAPTLIGEEIPFARNMHVVWIALAMIALLGLPGLAYRSRIELE
AHRGAVAFDKIPELPEEGMEPSTFSKARVCGSCSRWSPVRLQDVAFFGLN
FFLWVFLSFGFSICTKTYMRETGNPVALLAIQGWVGVGVLCATNLAAWVR
RRGCSSQPASYSPASSIATSPDSCLSPSVSSSSPSFLPVPFPTSSEPEWV
GNCGLREARRLGRGVWQAGMLHSANALLTSWSVLVGGVAATHALKALEPA
VAAGFSRWLLGSSLPPGRAAAVAIIVLGLGILMIPVHLRRWVKGSDDESS
DGEGGGAGALMGTGQGVAFAAVISACACCAIVLRNVLLKKPDPPPPSPPL
GLLACSIVGAVIGSMALLVPWLPFSWEWAGESLLRTSGVNAALCSAGYNL
ASFNLLSELTPVGHAVGNAGKRVLLFTSGLFLLGEAGPMSSRQLAGMSVA
FFGFSAYNFVGSSVTSASLSSR*
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mRNA from alignment at Ecto-sp13_S_contig14:58369..60537-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig14.3123.1 ID=mRNA_Ecto-sp13_S_contig14.3123.1|Name=mRNA_Ecto-sp13_S_contig14.3123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14:58369..60537- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGACACGGACACGAAGCCATTGTGCTTCGTACTACCATCAGCCATGAA GGAGAATTTGCAGGAACTGCACCAAATATTCTCCTCCAAGATCGTGGTTA AGGATGATATCCTCCTGAACGTGTTCCCGAAGCACCAGAAGGAGATTGAG GCGTATCCATATCCCACGCGGGTGGAGGAAATACTGGATCCGGATCACTT CGCGAAGCGCCTATGCGACTGTGGCGCGGTAGTGGCGAGTCGCCTGCACG GGGCGATCCTTGCCCTCCAAGCCGGAGTCCCGACGATCGCCGCTTGGCCA GCTGCGGAGGGCAACAAGGTGCCGGACCTCATGAGGGATGTCATGCGGCT CAGGGATCAGTTCGTCTTGATCGACGACTCCACTACGCGGCGAGATTTGG ACACGAGGATCAAGAAACTCCGAGATGATTACTCGGCGGGACGACGGAGT CGTGTGTTCGACAAGCTTGAGTTCGTGGCTCTGCACACCCAGCACGAGTG TGCGCACATGCTTTCGAGCGTTGCTCACTTGCAGCTCTCACCAGAAGTGG CCTCGCGGAGACGGCCAAGTTTCGGTGGCTTCTGGGAGGAGATGGAGCGT ACAAATGATTCCCAGGGGGAGGAGACAGAAGGCGAGGTCCGAGTTGCCGA ACAAACTGAGGAGGGGGGCGGAGGATCTAGTCTCACGCTGGGCGCAGTGA GCAGGCGGCATGGCGGGACTGAATCTTCATGGATGAGGTTGGGGAGAGCG TGGGGACCGGACGGCACAACCCTTGCCCCTACTCTGATCGGGGAGGAGAT ACCCTTCGCGAGGAATATGCATGTGGTGTGGATAGCTCTGGCCATGATAG CTCTGCTCGGGCTCCCCGGGTTGGCATATCGATCAAGGATAGAACTGGAA GCACATCGGGGTGCTGTTGCGTTTGATAAGATCCCGGAGTTGCCGGAAGA AGGAATGGAGCCCTCCACCTTCTCCAAAGCGCGTGTGTGTGGTTCTTGCT CCCGCTGGAGCCCGGTCCGTTTACAAGATGTAGCGTTCTTCGGGCTCAAC TTTTTCCTCTGGGTCTTTCTGTCCTTCGGGTTCAGCATTTGCACCAAGAC ATACATGCGCGAGACTGGCAATCCCGTGGCGCTGCTTGCCATCCAAGGGT GGGTCGGCGTTGGCGTGCTCTGCGCGACGAACCTGGCGGCGTGGGTTAGA CGGCGTGGATGCTCGTCCCAACCTGCCTCCTACTCCCCAGCCAGCAGTAT TGCTACTTCGCCAGACTCTTGTTTGTCGCCTAGCGTGTCCTCTTCCTCAC CCTCCTTCCTTCCAGTCCCCTTCCCGACTTCATCTGAACCTGAATGGGTA GGGAACTGCGGGCTTAGGGAAGCAAGACGCTTGGGGCGAGGTGTATGGCA GGCGGGAATGTTGCACTCTGCCAACGCGTTGCTGACGAGTTGGTCGGTTC TGGTAGGAGGGGTGGCTGCCACGCACGCCCTCAAGGCGCTTGAGCCAGCG GTGGCGGCCGGTTTCTCGCGATGGCTCCTTGGATCTTCGCTTCCACCCGG CCGTGCCGCCGCCGTTGCCATCATTGTGCTGGGCTTGGGCATTTTGATGA TACCGGTGCATCTTCGGCGGTGGGTAAAAGGAAGCGACGATGAGTCGTCC GACGGGGAAGGGGGGGGAGCGGGCGCTTTGATGGGCACGGGTCAGGGTGT GGCGTTTGCCGCAGTGATATCGGCGTGTGCCTGCTGCGCTATTGTCCTGC GAAACGTTTTGTTAAAGAAACCGGATCCTCCGCCGCCCTCGCCGCCTTTG GGCTTATTAGCTTGTAGCATTGTGGGCGCTGTGATCGGCTCGATGGCTTT GCTGGTGCCATGGTTGCCGTTCAGCTGGGAGTGGGCTGGAGAATCGCTGC TGCGCACGAGCGGTGTGAACGCGGCGCTTTGCTCTGCGGGGTACAACCTG GCGTCGTTCAATCTTCTTTCGGAGCTGACTCCGGTTGGGCATGCCGTAGG AAATGCCGGCAAGCGCGTGCTTTTGTTCACATCGGGGTTGTTTCTGCTTG GGGAAGCAGGACCCATGTCTTCGAGACAGTTAGCTGGGATGTCGGTGGCC TTCTTCGGGTTTTCGGCCTACAATTTCGTGGGATCGTCCGTCACGTCCGC ATCTCTATCGTCTCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig14:58369..60537-

>mRNA_Ecto-sp13_S_contig14.3123.1 ID=mRNA_Ecto-sp13_S_contig14.3123.1|Name=mRNA_Ecto-sp13_S_contig14.3123.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2169bp|location=Sequence derived from alignment at Ecto-sp13_S_contig14:58369..60537- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGACACGGACACGAAGCCATTGTGCTTCGTACTACCATCAGCCATGAA
GGAGAATTTGCAGGAACTGCACCAAATATTCTCCTCCAAGATCGTGGTTA
AGGATGATATCCTCCTGAACGTGTTCCCGAAGCACCAGAAGGAGATTGAG
GCGTATCCATATCCCACGCGGGTGGAGGAAATACTGGATCCGGATCACTT
CGCGAAGCGCCTATGCGACTGTGGCGCGGTAGTGGCGAGTCGCCTGCACG
GGGCGATCCTTGCCCTCCAAGCCGGAGTCCCGACGATCGCCGCTTGGCCA
GCTGCGGAGGGCAACAAGGTGCCGGACCTCATGAGGGATGTCATGCGGCT
CAGGGATCAGTTCGTCTTGATCGACGACTCCACTACGCGGCGAGATTTGG
ACACGAGGATCAAGAAACTCCGAGATGATTACTCGGCGGGACGACGGAGT
CGTGTGTTCGACAAGCTTGAGTTCGTGGCTCTGCACACCCAGCACGAGTG
TGCGCACATGCTTTCGAGCGTTGCTCACTTGCAGCTCTCACCAGAAGTGG
CCTCGCGGAGACGGCCAAGTTTCGGTGGCTTCTGGGAGGAGATGGAGCGT
ACAAATGATTCCCAGGGGGAGGAGACAGAAGGCGAGGTCCGAGTTGCCGA
ACAAACTGAGGAGGGGGGCGGAGGATCTAGTCTCACGCTGGGCGCAGTGA
GCAGGCGGCATGGCGGGACTGAATCTTCATGGATGAGGTTGGGGAGAGCG
TGGGGACCGGACGGCACAACCCTTGCCCCTACTCTGATCGGGGAGGAGAT
ACCCTTCGCGAGGAATATGCATGTGGTGTGGATAGCTCTGGCCATGATAG
CTCTGCTCGGGCTCCCCGGGTTGGCATATCGATCAAGGATAGAACTGGAA
GCACATCGGGGTGCTGTTGCGTTTGATAAGATCCCGGAGTTGCCGGAAGA
AGGAATGGAGCCCTCCACCTTCTCCAAAGCGCGTGTGTGTGGTTCTTGCT
CCCGCTGGAGCCCGGTCCGTTTACAAGATGTAGCGTTCTTCGGGCTCAAC
TTTTTCCTCTGGGTCTTTCTGTCCTTCGGGTTCAGCATTTGCACCAAGAC
ATACATGCGCGAGACTGGCAATCCCGTGGCGCTGCTTGCCATCCAAGGGT
GGGTCGGCGTTGGCGTGCTCTGCGCGACGAACCTGGCGGCGTGGGTTAGA
CGGCGTGGATGCTCGTCCCAACCTGCCTCCTACTCCCCAGCCAGCAGTAT
TGCTACTTCGCCAGACTCTTGTTTGTCGCCTAGCGTGTCCTCTTCCTCAC
CCTCCTTCCTTCCAGTCCCCTTCCCGACTTCATCTGAACCTGAATGGGTA
GGGAACTGCGGGCTTAGGGAAGCAAGACGCTTGGGGCGAGGTGTATGGCA
GGCGGGAATGTTGCACTCTGCCAACGCGTTGCTGACGAGTTGGTCGGTTC
TGGTAGGAGGGGTGGCTGCCACGCACGCCCTCAAGGCGCTTGAGCCAGCG
GTGGCGGCCGGTTTCTCGCGATGGCTCCTTGGATCTTCGCTTCCACCCGG
CCGTGCCGCCGCCGTTGCCATCATTGTGCTGGGCTTGGGCATTTTGATGA
TACCGGTGCATCTTCGGCGGTGGGTAAAAGGAAGCGACGATGAGTCGTCC
GACGGGGAAGGGGGGGGAGCGGGCGCTTTGATGGGCACGGGTCAGGGTGT
GGCGTTTGCCGCAGTGATATCGGCGTGTGCCTGCTGCGCTATTGTCCTGC
GAAACGTTTTGTTAAAGAAACCGGATCCTCCGCCGCCCTCGCCGCCTTTG
GGCTTATTAGCTTGTAGCATTGTGGGCGCTGTGATCGGCTCGATGGCTTT
GCTGGTGCCATGGTTGCCGTTCAGCTGGGAGTGGGCTGGAGAATCGCTGC
TGCGCACGAGCGGTGTGAACGCGGCGCTTTGCTCTGCGGGGTACAACCTG
GCGTCGTTCAATCTTCTTTCGGAGCTGACTCCGGTTGGGCATGCCGTAGG
AAATGCCGGCAAGCGCGTGCTTTTGTTCACATCGGGGTTGTTTCTGCTTG
GGGAAGCAGGACCCATGTCTTCGAGACAGTTAGCTGGGATGTCGGTGGCC
TTCTTCGGGTTTTCGGCCTACAATTTCGTGGGATCGTCCGTCACGTCCGC
ATCTCTATCGTCTCGGTGA
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