mRNA_Ecto-sp13_S_contig13996.3112.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13996.3112.1
Unique NamemRNA_Ecto-sp13_S_contig13996.3112.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13996.3112.1 vs. uniprot
Match: A0A518DD81_9BACT (Autotransporter-associated beta strand repeat protein n=1 Tax=Pirellulimonas nuda TaxID=2528009 RepID=A0A518DD81_9BACT)

HSP 1 Score: 104 bits (260), Expect = 1.680e-22
Identity = 82/220 (37.27%), Postives = 113/220 (51.36%), Query Frame = 1 
Query:    7 IDLSALDTID-STGGDVLFQA-DNGRLTFTDFTAQADTELSATN-------TGEVRLLGDFRNSLADEASV--------------ELTTGVMTARGQSPQTIEIGGENLGVDQAIDGNFGVGQLQIGAIGQRSIVRLEDRTDNGNRGGVAGTTESLYLFGLGNEDGLLLRGDSVLILSHLDVYAYDFSVN----EQVSLRSLFDNGVERL-VFSDGVIQL 582
            +DLS + TI  + GG + FQA   GRL+     A     + A          G++ +LG   + L D  +               +   GV+   G   Q +E+GG +L V  A  GNFG+G+L +G+ GQ + V L D  DNGNRGG  G  ESLYL+G+G  +GL++  DSVL L+ L+VYA+D S       QV L SLF  G  R+  F  G +QL
Sbjct: 1118 LDLSGVTTIQKNNGGTLRFQARTGGRLSLGGLVASGSVRIEADGLDSGIEVAGDL-VLGASASLLVDNQATLRVGGDVSYPAIEFDYDGGVLNLVGGGAQQLEVGGADLLVGGATAGNFGLGRLLVGSPGQGTGVTLVDAVDNGNRGGAGGQDESLYLYGVGGPNGLVVYPDSVLTLNGLNVYAWDPSAGGGAGAQVHLNSLFAPGQNRIPYFGGGYLQL 1336
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BLAST of mRNA_Ecto-sp13_S_contig13996.3112.1 vs. uniprot
Match: A0A6I7PHR7_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A6I7PHR7_9BACT)

HSP 1 Score: 93.2 bits (230), Expect = 1.190e-18
Identity = 57/151 (37.75%), Postives = 82/151 (54.30%), Query Frame = 1 
Query:  136 GEVRLLGDFRNSLADEASVELTTGVMTARGQSPQTIEIGGENLGV--DQAIDGNFGVGQLQIGAIGQRSIVRLEDRTDNGNRGGVAGTTESLYLFGLGNEDGLLLRGDSVLILSHLDVYAYDFSVNEQVSLRSLFDNGVERLVFSDGVIQL 582
            G + L   F     DE  +++ +G +   G     +E+GG + G   D  ++GNFG+GQL +GA G    V+L D  DNGNR G    TE+LYL+GLG   GL+L   S L +++++VY     V   V L SLF +G   + + DG I L
Sbjct:  318 GTITLNTHFTFDYTDETRLQMQSGRLNMVGGGFSFLEVGGLDAGAVFDPGVNGNFGIGQLVLGADGNEKFVQLIDVFDNGNRVGGTPGTEALYLYGLGGPAGLVLESGSTLNINNINVYVAVDGV--MVHLNSLFTSGQTMITYGDGFILL 466
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BLAST of mRNA_Ecto-sp13_S_contig13996.3112.1 vs. uniprot
Match: A0A7C5WPX3_9BACT (Uncharacterized protein n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7C5WPX3_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 5.230e-13
Identity = 58/149 (38.93%), Postives = 74/149 (49.66%), Query Frame = 1 
Query:  154 GDFRNSLADEASVELTTGVMTARGQSPQTIEIGGENLGVD-QAIDGNFGVGQLQIGAIGQRSIVRLEDRTDNGNRGGVAGTTESLYLFGLGNED-GLLLRGDSVLILSHLDVYAYDFSVNEQVSLRSLFDNGVERLVFSDGVIQLEELP 594
            GD  ++  +E       G +   G   Q  E+ G +LG+    I  NF  G + +G   Q + V L+D  DNGNRG    T E LYL G    D GL +RG SVL L+ LD  AY  +VN  V L  LF  G  R+ + DG IQL   P
Sbjct:   20 GDLTHTATNEDDHATRNGTICMDGTGVQHFEVAGADLGLPIDDIANNFNWGAMVVGQSTQTTNVILQDVIDNGNRG-PNDTPEVLYLSGFPQGDNGLSIRGGSVLNLNGLD--AYVGTVNGWVHLNELFSPGQLRIPYDDGFIQLTVCP 165
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13996.3112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A518DD81_9BACT1.680e-2237.27Autotransporter-associated beta strand repeat prot... [more]
A0A6I7PHR7_9BACT1.190e-1837.75Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
A0A7C5WPX3_9BACT5.230e-1338.93Uncharacterized protein n=1 Tax=Phycisphaerales ba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13996contigEcto-sp13_S_contig13996:3952..4548 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size597
Hectar predicted targeting categoryother localisation
Exons1
Cds size597
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.74082-CDS-Ecto-sp13_S_contig13996:3951..45481681462746.74082-CDS-Ecto-sp13_S_contig13996:3951..4548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13996 3952..4548 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13996.3112.1prot_Ecto-sp13_S_contig13996.3112.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13996 3952..4548 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13996.3112.1

>prot_Ecto-sp13_S_contig13996.3112.1 ID=prot_Ecto-sp13_S_contig13996.3112.1|Name=mRNA_Ecto-sp13_S_contig13996.3112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=199bp
SSIDLSALDTIDSTGGDVLFQADNGRLTFTDFTAQADTELSATNTGEVRL
LGDFRNSLADEASVELTTGVMTARGQSPQTIEIGGENLGVDQAIDGNFGV
GQLQIGAIGQRSIVRLEDRTDNGNRGGVAGTTESLYLFGLGNEDGLLLRG
DSVLILSHLDVYAYDFSVNEQVSLRSLFDNGVERLVFSDGVIQLEELPG
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mRNA from alignment at Ecto-sp13_S_contig13996:3952..4548-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13996.3112.1 ID=mRNA_Ecto-sp13_S_contig13996.3112.1|Name=mRNA_Ecto-sp13_S_contig13996.3112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13996:3952..4548- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCGATCGACCTCTCCGCTCTCGACACCATCGACTCGACCGGCGGTGA
TGTCCTCTTCCAAGCAGACAACGGCAGGCTGACGTTCACCGATTTCACTG
CTCAGGCTGACACCGAGCTGTCGGCTACCAACACTGGCGAAGTCCGCCTG
CTTGGCGACTTCCGCAACTCGTTGGCCGATGAGGCGAGCGTCGAGCTCAC
GACGGGCGTGATGACTGCCCGAGGCCAATCACCGCAGACGATCGAGATCG
GCGGCGAGAACCTCGGGGTCGATCAAGCGATCGACGGCAACTTCGGCGTC
GGCCAATTGCAGATCGGCGCCATTGGTCAGCGGTCGATAGTGAGGCTCGA
AGACCGAACCGACAACGGCAACCGCGGAGGAGTGGCGGGTACGACCGAAT
CGCTCTACCTGTTCGGTCTCGGCAACGAAGACGGCTTGCTACTCCGCGGA
GATTCGGTGCTGATTCTCAGCCACCTCGACGTCTACGCTTACGACTTCTC
GGTCAATGAACAGGTCAGCCTCCGTAGCCTATTCGACAACGGGGTCGAGC
GTCTGGTCTTCAGCGACGGCGTGATCCAGCTCGAAGAGCTGCCGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13996:3952..4548-

>mRNA_Ecto-sp13_S_contig13996.3112.1 ID=mRNA_Ecto-sp13_S_contig13996.3112.1|Name=mRNA_Ecto-sp13_S_contig13996.3112.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13996:3952..4548- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCGATCGACCTCTCCGCTCTCGACACCATCGACTCGACCGGCGGTGA
TGTCCTCTTCCAAGCAGACAACGGCAGGCTGACGTTCACCGATTTCACTG
CTCAGGCTGACACCGAGCTGTCGGCTACCAACACTGGCGAAGTCCGCCTG
CTTGGCGACTTCCGCAACTCGTTGGCCGATGAGGCGAGCGTCGAGCTCAC
GACGGGCGTGATGACTGCCCGAGGCCAATCACCGCAGACGATCGAGATCG
GCGGCGAGAACCTCGGGGTCGATCAAGCGATCGACGGCAACTTCGGCGTC
GGCCAATTGCAGATCGGCGCCATTGGTCAGCGGTCGATAGTGAGGCTCGA
AGACCGAACCGACAACGGCAACCGCGGAGGAGTGGCGGGTACGACCGAAT
CGCTCTACCTGTTCGGTCTCGGCAACGAAGACGGCTTGCTACTCCGCGGA
GATTCGGTGCTGATTCTCAGCCACCTCGACGTCTACGCTTACGACTTCTC
GGTCAATGAACAGGTCAGCCTCCGTAGCCTATTCGACAACGGGGTCGAGC
GTCTGGTCTTCAGCGACGGCGTGATCCAGCTCGAAGAGCTGCCGGGC
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