mRNA_Ecto-sp13_S_contig10307.311.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10307.311.1
Unique NamemRNA_Ecto-sp13_S_contig10307.311.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A6H5JIN2_9PHAE (Transket_pyr domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIN2_9PHAE)

HSP 1 Score: 436 bits (1121), Expect = 3.820e-150
Identity = 235/274 (85.77%), Postives = 239/274 (87.23%), Query Frame = 1 
Query:    1 MSPSVARCPRSLAAGSAGLRNAVLSAASASTTGSRMRSASDSLLLRPPRSNREPRRQRWTAASNGGALARPRTLQPPGLSNRRASSVVDNDIDEDDNSVAAGARGTKGAPASAGPGPG--CGTRYAEGPSTRMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            MS SV RCPRSLAAGSAGLRNAVLS ASASTTGSRMRSASDSLLLRP RSNRE RRQRWTAASNGGALARPRTL P G  NRRASSV+D+DIDE                          CGTRYAEGPSTRMNLFTAVNAGLRTAMETD+TAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSG+QFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV
Sbjct:    1 MSRSVLRCPRSLAAGSAGLRNAVLSTASASTTGSRMRSASDSLLLRPLRSNRESRRQRWTAASNGGALARPRTLHPTGFPNRRASSVIDSDIDEXXXXXXXXXXXXXXXXXXXXXXXXXXCGTRYAEGPSTRMNLFTAVNAGLRTAMETDETAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 274
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A812TXL3_9DINO (BkdB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812TXL3_9DINO)

HSP 1 Score: 262 bits (669), Expect = 6.020e-83
Identity = 121/148 (81.76%), Postives = 139/148 (93.92%), Query Frame = 1 
Query:  373 EGPSTRMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            EGP  +MNLFTA+N G+R A++TDDTA+VFGEDVAFGGVFRC+  LKE+FGP+RVF++ LCEQGIAGFAIGYA+MG+TAIAE+QFADYIFPAFDQIVNEAAK+RYRSGD+FNCGGLT R+P GAVGHGGHYHSQSPE+YFAHTPGLKV
Sbjct:   36 EGPRKKMNLFTAINDGMRVALKTDDTAVVFGEDVAFGGVFRCSVDLKEEFGPERVFNTPLCEQGIAGFAIGYAAMGRTAIAEMQFADYIFPAFDQIVNEAAKYRYRSGDEFNCGGLTFRSPYGAVGHGGHYHSQSPEAYFAHTPGLKV 183
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A7S1C9I4_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C9I4_9STRA)

HSP 1 Score: 254 bits (648), Expect = 4.980e-80
Identity = 119/149 (79.87%), Postives = 137/149 (91.95%), Query Frame = 1 
Query:  370 AEGPSTRMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            A+GP  RMN+FTA+N  LR A+ TDDTA++FGEDVAFGGVFRC+  L+E+FG DRVF++ LCEQGIAGFAIGYA+MG+TAIAE+QFADYIFPAFDQIVNEAAK+RYRSGDQ++CG LTIRAP GAVGHGGHYHSQSPE+YFAHTPGLKV
Sbjct:   17 ADGPVQRMNMFTAINDALRVALRTDDTAVLFGEDVAFGGVFRCSVDLREEFGEDRVFNTPLCEQGIAGFAIGYAAMGRTAIAEMQFADYIFPAFDQIVNEAAKYRYRSGDQYDCGPLTIRAPYGAVGHGGHYHSQSPEAYFAHTPGLKV 165
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A662Y718_9STRA (Transket_pyr domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y718_9STRA)

HSP 1 Score: 249 bits (637), Expect = 1.360e-78
Identity = 121/145 (83.45%), Postives = 130/145 (89.66%), Query Frame = 1 
Query:  382 STRMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            +T MNLFTA+N  +R AMETD TA+VFGEDVAFGGVFRC+  LKEQFG DRVF+S LCEQ IAGFAIGYAS G+TAIAEIQFADYIFPAFDQIVNEAAKFRYRSG +FNCG LT RAP GAVGHGGHYHSQSPE+YFAHTPGLKV
Sbjct:   49 TTPMNLFTAINDAMRVAMETDPTAVVFGEDVAFGGVFRCSVDLKEQFGGDRVFNSPLCEQAIAGFAIGYASTGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGGEFNCGKLTFRAPYGAVGHGGHYHSQSPEAYFAHTPGLKV 193
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A5A8C5T5_CAFRO (Transket_pyr domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8C5T5_CAFRO)

HSP 1 Score: 251 bits (641), Expect = 1.390e-78
Identity = 116/147 (78.91%), Postives = 135/147 (91.84%), Query Frame = 1 
Query:  376 GPSTRMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            GP+TRMNLFTA+N G+R AM+TDD  I+FGEDVAFGGVFRC+ GL+E+FG +RVF++ LCEQGIAGFAIGYA+ G++ IAE+QFADYIFPAFDQIVNEAAKFRYRSG QF+CGG+T R+PCGAVGHGG YHSQSPE+YFAHTPGLKV
Sbjct:   48 GPATRMNLFTAINQGMRAAMQTDDDCILFGEDVAFGGVFRCSMGLREEFGGERVFNTPLCEQGIAGFAIGYAATGRSCIAELQFADYIFPAFDQIVNEAAKFRYRSGGQFDCGGVTFRSPCGAVGHGGLYHSQSPEAYFAHTPGLKV 194
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A067CKD9_SAPPC (2-oxoisovalerate dehydrogenase subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CKD9_SAPPC)

HSP 1 Score: 249 bits (637), Expect = 2.280e-78
Identity = 120/143 (83.92%), Postives = 131/143 (91.61%), Query Frame = 1 
Query:  388 RMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            RMN+FTA+N  +R AMETD TA+VFGEDVAFGGVFRCT  LKE+FG DRVF+S LCEQGIAGFAIGYAS+G+TAIAEIQFADYIFPAFDQIVNEAAKFRYRSG+QF+CG LT RAP GAVGHG HYHSQSPE+YFAHTPGLKV
Sbjct:   29 RMNMFTALNDAMRVAMETDPTAVVFGEDVAFGGVFRCTVDLKEKFGEDRVFNSPLCEQGIAGFAIGYASIGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFDCGKLTFRAPYGAVGHGAHYHSQSPEAYFAHTPGLKV 171
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A1V9Z8A2_9STRA (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z8A2_9STRA)

HSP 1 Score: 248 bits (633), Expect = 1.090e-77
Identity = 119/143 (83.22%), Postives = 130/143 (90.91%), Query Frame = 1 
Query:  388 RMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            RMN+FTA+N  +R AMETD TA+VFGEDVAFGGVFRCT  LKE+FG DRVF+S LCEQGIAGFAIGYAS+G+TAIAEIQFADYIFPAFDQIVNEAAKFRYRSG+QF+CG LT R P GAVGHG HYHSQSPE+YFAHTPGLKV
Sbjct:   29 RMNMFTALNDAMRVAMETDPTAVVFGEDVAFGGVFRCTVDLKEKFGEDRVFNSPLCEQGIAGFAIGYASIGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFDCGKLTFRTPYGAVGHGAHYHSQSPEAYFAHTPGLKV 171
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A418BXW7_9STRA (Transket_pyr domain-containing protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418BXW7_9STRA)

HSP 1 Score: 246 bits (629), Expect = 1.250e-77
Identity = 119/143 (83.22%), Postives = 130/143 (90.91%), Query Frame = 1 
Query:  388 RMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            RMN+FTA+N  +R AMETD TA VFGEDVAFGGVFRCT  L+EQFG DRVF+S LCEQGIAGFAIGYAS+G+TAIAEIQFADYIFPAFDQIVNEAAKFRYRSG+Q++CG LT RAP GAVGHG HYHSQSPE+YFAHTPGLKV
Sbjct:   20 RMNMFTALNDAMRVAMETDPTAAVFGEDVAFGGVFRCTVDLREQFGEDRVFNSPLCEQGIAGFAIGYASVGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQWDCGKLTFRAPYGAVGHGAHYHSQSPEAYFAHTPGLKV 162
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A3F2S123_9STRA (Transket_pyr domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S123_9STRA)

HSP 1 Score: 248 bits (634), Expect = 1.280e-77
Identity = 118/145 (81.38%), Postives = 132/145 (91.03%), Query Frame = 1 
Query:  382 STRMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            +TRMNLFTA+N  +R AM+TD +A++FGEDVAFGGVFRC+  L+EQFG DRVF+S LCEQGIAGFAIGYAS G+TAIAEIQFADYIFPAFDQIVNEAAKFRYRSG +F+CG LT RAP GAVGHGGHYHSQSPE+YFAHTPGLKV
Sbjct:   44 TTRMNLFTAINDAMRVAMDTDPSAVLFGEDVAFGGVFRCSVDLREQFGSDRVFNSPLCEQGIAGFAIGYASTGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGSEFDCGKLTFRAPYGAVGHGGHYHSQSPEAYFAHTPGLKV 188
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BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Match: A0A1V9YPY9_9STRA (2-oxoisovalerate dehydrogenase subunit beta, mitochondrial n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YPY9_9STRA)

HSP 1 Score: 248 bits (632), Expect = 1.460e-77
Identity = 118/143 (82.52%), Postives = 131/143 (91.61%), Query Frame = 1 
Query:  388 RMNLFTAVNAGLRTAMETDDTAIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMGKTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVGHGGHYHSQSPESYFAHTPGLKV 816
            RMN+FTA+N  +R AMETD +A++FGEDVAFGGVFRCT  LKE+FG DRVF+S LCEQGIAGFAIGYAS+G+TAIAEIQFADYIFPAFDQIVNEAAKFRYRSG+QF+CG LT RAP GAVGHG HYHSQSPE+YFAHTPGLKV
Sbjct:   27 RMNMFTALNDAMRVAMETDPSAVIFGEDVAFGGVFRCTVDLKEKFGEDRVFNSPLCEQGIAGFAIGYASIGRTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFDCGKLTFRAPYGAVGHGAHYHSQSPEAYFAHTPGLKV 169
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10307.311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIN2_9PHAE3.820e-15085.77Transket_pyr domain-containing protein n=2 Tax=Ect... [more]
A0A812TXL3_9DINO6.020e-8381.76BkdB protein n=1 Tax=Symbiodinium sp. KB8 TaxID=23... [more]
A0A7S1C9I4_9STRA4.980e-8079.87Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A662Y718_9STRA1.360e-7883.45Transket_pyr domain-containing protein n=1 Tax=Not... [more]
A0A5A8C5T5_CAFRO1.390e-7878.91Transket_pyr domain-containing protein n=2 Tax=Caf... [more]
A0A067CKD9_SAPPC2.280e-7883.922-oxoisovalerate dehydrogenase subunit beta n=2 Ta... [more]
A0A1V9Z8A2_9STRA1.090e-7783.222-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]
A0A418BXW7_9STRA1.250e-7783.22Transket_pyr domain-containing protein n=4 Tax=Aph... [more]
A0A3F2S123_9STRA1.280e-7781.38Transket_pyr domain-containing protein n=3 Tax=Phy... [more]
A0A1V9YPY9_9STRA1.460e-7782.522-oxoisovalerate dehydrogenase subunit beta, mitoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10307contigEcto-sp13_S_contig10307:3172..5569 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score508.4
Seed ortholog evalue2e-141
Seed eggNOG ortholog2880.D7FZ95
Preferred nameBCKDHB
Model size816
KEGG rclassRC00027,RC00029,RC00117,RC00627,RC02743,RC02883,RC02949,RC02953
KEGG koko:K00059,ko:K00167
KEGG ReactionR04533,R04534,R04536,R04543,R04566,R04953,R04964,R07599,R07600,R07601,R07602,R07603,R07604,R07759,R07763,R10116,R10120,R10996,R10997,R11671
KEGG Pathwayko00061,ko00280,ko00333,ko00640,ko00780,ko01040,ko01100,ko01110,ko01130,ko01212,map00061,map00280,map00333,map00640,map00780,map01040,map01100,map01110,map01130,map01212
KEGG ModuleM00036,M00083,M00572
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0003826,GO:0003863,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005947,GO:0006082,GO:0006139,GO:0006163,GO:0006164,GO:0006520,GO:0006637,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0007154,GO:0007584,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009063,GO:0009081,GO:0009083,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009267,GO:0009314,GO:0009416,GO:0009605,GO:0009628,GO:0009642,GO:0009646,GO:0009719,GO:0009725,GO:0009743,GO:0009744,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0010565,GO:0014070,GO:0014074,GO:0016020,GO:0016054,GO:0016491,GO:0016624,GO:0016903,GO:0017086,GO:0018130,GO:0019216,GO:0019217,GO:0019222,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0019866,GO:0030062,GO:0031090,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0032991,GO:0033554,GO:0033865,GO:0033866,GO:0033875,GO:0033993,GO:0034030,GO:0034032,GO:0034033,GO:0034285,GO:0034641,GO:0034654,GO:0035337,GO:0035383,GO:0035384,GO:0042221,GO:0042304,GO:0042594,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0043617,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045239,GO:0045240,GO:0045723,GO:0045834,GO:0045923,GO:0046390,GO:0046395,GO:0046483,GO:0046683,GO:0046889,GO:0046890,GO:0046949,GO:0048518,GO:0048522,GO:0048545,GO:0048580,GO:0048582,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051186,GO:0051188,GO:0051239,GO:0051240,GO:0051384,GO:0051591,GO:0051716,GO:0055086,GO:0055114,GO:0061062,GO:0061063,GO:0062012,GO:0062013,GO:0065007,GO:0070013,GO:0071496,GO:0071616,GO:0071704,GO:0072521,GO:0072522,GO:0080090,GO:0090407,GO:0098798,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901565,GO:1901566,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1990204,GO:2000026
Exons5
EggNOG free text desc.3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
EggNOG OGsCOG0022@1,KOG0525@2759
Ec32 ortholog descriptionBranched chain alpha-keto acid dehydrogenase E1 beta subunit
Ec32 orthologEc-06_009010.1
EC1.1.1.100,1.2.4.4
Cds size816
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01004
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462522.441815-CDS-Ecto-sp13_S_contig10307:3171..33301681462522.441815-CDS-Ecto-sp13_S_contig10307:3171..3330Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10307 3172..3330 +
1681462522.4538836-CDS-Ecto-sp13_S_contig10307:3769..40631681462522.4538836-CDS-Ecto-sp13_S_contig10307:3769..4063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10307 3770..4063 +
1681462522.4617653-CDS-Ecto-sp13_S_contig10307:4469..46401681462522.4617653-CDS-Ecto-sp13_S_contig10307:4469..4640Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10307 4470..4640 +
1681462522.4699583-CDS-Ecto-sp13_S_contig10307:5126..51591681462522.4699583-CDS-Ecto-sp13_S_contig10307:5126..5159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10307 5127..5159 +
1681462522.478547-CDS-Ecto-sp13_S_contig10307:5410..55691681462522.478547-CDS-Ecto-sp13_S_contig10307:5410..5569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10307 5411..5569 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10307.311.1prot_Ecto-sp13_S_contig10307.311.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10307 3172..5569 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10307.311.1

>prot_Ecto-sp13_S_contig10307.311.1 ID=prot_Ecto-sp13_S_contig10307.311.1|Name=mRNA_Ecto-sp13_S_contig10307.311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=272bp
MSPSVARCPRSLAAGSAGLRNAVLSAASASTTGSRMRSASDSLLLRPPRS
NREPRRQRWTAASNGGALARPRTLQPPGLSNRRASSVVDNDIDEDDNSVA
AGARGTKGAPASAGPGPGCGTRYAEGPSTRMNLFTAVNAGLRTAMETDDT
AIVFGEDVAFGGVFRCTGGLKEQFGPDRVFDSTLCEQGIAGFAIGYASMG
KTAIAEIQFADYIFPAFDQIVNEAAKFRYRSGDQFNCGGLTIRAPCGAVG
HGGHYHSQSPESYFAHTPGLKV
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mRNA from alignment at Ecto-sp13_S_contig10307:3172..5569+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10307.311.1 ID=mRNA_Ecto-sp13_S_contig10307.311.1|Name=mRNA_Ecto-sp13_S_contig10307.311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2398bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10307:3172..5569+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCCCAGTGTTGCAAGGTGCCCTCGATCCCTAGCAGCGGGTTCCGC
CGGCCTGAGGAATGCCGTTCTCAGCGCCGCCAGCGCTAGTACCACAGGAT
CAAGGATGAGAAGCGCCTCGGATAGCTTGCTACTTCGACCGCCTCGCAGC
AATCGGGAGGTAGGAATATAAGTAACAAGTTTAAGTCCATCTCTGGGTGA
AATTGCGGGCCTTCGGCCGCACGATAGTACCCTCACGTAGCAAAGCGTGC
TCTCCATTACTACTGTGGGACAGCGTGCGGGGCACCGTTCTTCGAAATTG
AAACGAGCCTCCGCGAAACAACGCGTCGTATGGCCGACGAATTTTCATTG
CTTGACGGGGAGACATTCATGGAACCCTCGGTGGCAAGGAGTGTTTAGAA
AGTATAAGAAAGTCGAACGAATTCACCACAGGTGTTCGGCGCCCTCTCCC
CCGTCTCTGTTTGTTCATCGAACACATGCTGGTTTAGAACAGAAGGCGTT
AAATGATTGCAGCTGAATAGTTTGATCAGGTCACTCATGGCTGGCACAAA
GAAGTTCCCCCGATCGCCCCTGTTGGCTGCCACCGCCACACACAGCAGCC
CCGGCGGCAGCGGTGGACCGCGGCAAGCAACGGCGGCGCGCTGGCCAGGC
CACGAACGCTTCAACCACCGGGTCTTTCGAATCGAAGAGCTTCGAGCGTC
GTCGACAACGACATCGATGAGGATGATAATTCGGTGGCGGCAGGGGCACG
AGGCACGAAAGGAGCTCCAGCTTCCGCCGGCCCCGGCCCCGGCTGCGGAA
CAAGGTATGCGGAAGGACCTAGCACAAGGATGAACCTGTTCACGGCTGTG
AATGCTGGGCTTCGCACGGCGATGGAGACCGATGACACCGCGGTAAGGGG
GCTAGCCCAACACAGGGGGCATTTCGGAAAGAAACGGGCAATTCGGAAAG
AAACAGGCATGTCCGAAACATGTAGTTAACATACGAAGTTTTGTTATCAC
AGCTTACGCTCCAGCCTACGGCGTTCGGTACGGCGGTGGTATATGATACG
CGTCGCTGATAGGACAATGGAGAGGCGGGCAAGTAGATATCCAACGGACG
ATGGCCACACCTGGGGTTTGACCGAAAACAAAACATAGCGAACTCATTAC
CCCGTCCAAGTGAGATTTTATTGCTTCTCTACGCGATGGAGTCACAACGG
AGCGTTCTTTTCACAGAGTTGACGATTTTGGTTGGAGTGATTATTCGAAT
GTCGGTAGAAAACCTCATGGGGGGCGGCGATCTGTCCCGTGCTACCAGAT
AGTGTTTGGAGAAGACGTGGCCTTCGGAGGCGTGTTCCGCTGCACGGGCG
GCCTCAAGGAGCAGTTCGGGCCTGACCGCGTGTTCGACAGCACCCTCTGC
GAACAGGGCATCGCGGGGTTTGCCATCGGATACGCCTCGATGGGCAAGAC
TGCTATCGCCGAGATTCAGGTGCACCTTGATTGCCGCACGCCGTCCAACA
GCGAAAGCTCGGTCATCTATCGTTAAGTGTTTTGTCCCTGCTGCAGTGCA
GGCGCGGTTTTCCGTTGCTCGTGCTACACGCGAGGTGTATGGACGGAGGT
AAACATGGACTCCTCGCGAAGCTGTCGTTCATTTGAAATTTCTGGGGGGA
AAACACGTTGAGCGCACGAAGCATACGTTTTCAAGCGGCGAAATTCGATC
TTCGCTCTCTGTTTGTACGTTTTGTGTTTTTGCACCCGATAGCAATCTTG
CGTTCTTAAACGCCCCGTCGGTTTTCGTTCATGGTACACATGGCGCCTGC
TGCCGCATGCCATCTCCCGTCAACGCCACTGACATGCGACAAATCCTTTT
TTTCTCCCCCCTCACGCCGCACCGCAAAGGTAGACATCACACCTCCGCGC
CTCATCGCTCTCTCCGTGCCTGTTGTGTTTCCACGCTCTCGTTGGCTTTG
TGCAGTTCGCAGACTATATTTTTCCGGCCTTTGATCAGGTGAGAGTTGAA
AATAGCACCGAGGAGTATGGCGTGCGAATGAATCTATGGTACCTTGCGCG
AAGTCGGTTGTCACCTGTCTATTCTCGATGTCCTCGATGCGCTTTTACGA
TCTCGAAGGGCATTTCGGGGGTGGAGGGTATCCGTGCTGTGGTCTGCATC
AGCGCCCTGAAATTACGGATTTTTTCTCCCGCGACATGCTTCCCGTCTCT
CACTACCCCCCGCGTAAATTTGTTGCGATTCTCGTCCAGATTGTAAACGA
AGCTGCCAAGTTTCGGTACCGCTCGGGCGACCAGTTCAACTGCGGAGGGC
TCACCATCCGTGCCCCGTGCGGTGCCGTGGGCCACGGAGGGCACTACCAC
TCACAATCCCCGGAGAGCTACTTCGCGCACACGCCGGGACTGAAGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10307:3172..5569+

>mRNA_Ecto-sp13_S_contig10307.311.1 ID=mRNA_Ecto-sp13_S_contig10307.311.1|Name=mRNA_Ecto-sp13_S_contig10307.311.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=816bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10307:3172..5569+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCCCAGTGTTGCAAGGTGCCCTCGATCCCTAGCAGCGGGTTCCGC
CGGCCTGAGGAATGCCGTTCTCAGCGCCGCCAGCGCTAGTACCACAGGAT
CAAGGATGAGAAGCGCCTCGGATAGCTTGCTACTTCGACCGCCTCGCAGC
AATCGGGAGCCCCGGCGGCAGCGGTGGACCGCGGCAAGCAACGGCGGCGC
GCTGGCCAGGCCACGAACGCTTCAACCACCGGGTCTTTCGAATCGAAGAG
CTTCGAGCGTCGTCGACAACGACATCGATGAGGATGATAATTCGGTGGCG
GCAGGGGCACGAGGCACGAAAGGAGCTCCAGCTTCCGCCGGCCCCGGCCC
CGGCTGCGGAACAAGGTATGCGGAAGGACCTAGCACAAGGATGAACCTGT
TCACGGCTGTGAATGCTGGGCTTCGCACGGCGATGGAGACCGATGACACC
GCGATAGTGTTTGGAGAAGACGTGGCCTTCGGAGGCGTGTTCCGCTGCAC
GGGCGGCCTCAAGGAGCAGTTCGGGCCTGACCGCGTGTTCGACAGCACCC
TCTGCGAACAGGGCATCGCGGGGTTTGCCATCGGATACGCCTCGATGGGC
AAGACTGCTATCGCCGAGATTCAGTTCGCAGACTATATTTTTCCGGCCTT
TGATCAGATTGTAAACGAAGCTGCCAAGTTTCGGTACCGCTCGGGCGACC
AGTTCAACTGCGGAGGGCTCACCATCCGTGCCCCGTGCGGTGCCGTGGGC
CACGGAGGGCACTACCACTCACAATCCCCGGAGAGCTACTTCGCGCACAC
GCCGGGACTGAAGGTA
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