mRNA_Ecto-sp13_S_contig1399.3106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1399.3106.1
Unique NamemRNA_Ecto-sp13_S_contig1399.3106.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1399.3106.1 vs. uniprot
Match: D7FVJ7_ECTSI (PFtsY, plastid signal recognition particle receptor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVJ7_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 2.670e-55
Identity = 148/165 (89.70%), Postives = 150/165 (90.91%), Query Frame = 1 
Query:    1 MMMLALGTALCGAASFPHAHAFAPSAMLSSAASNAFISRRGFVSSSTESVEERLTQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSG--MVMLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDRRAAADMGGLLNAKFSDGLAQSRLRFVGD 489
            MMMLALGTALCGAASFPHAHAFAPSAMLSSAASNAF+SRRGFVSSSTESVE+RLTQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX    MVMLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDR          NAKFSDGLAQSRLRFVGD
Sbjct:    1 MMMLALGTALCGAASFPHAHAFAPSAMLSSAASNAFVSRRGFVSSSTESVEKRLTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVMLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDR----------NAKFSDGLAQSRLRFVGD 155
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BLAST of mRNA_Ecto-sp13_S_contig1399.3106.1 vs. uniprot
Match: A0A6H5KTL2_9PHAE (SRP54 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.510e-22
Identity = 58/73 (79.45%), Postives = 58/73 (79.45%), Query Frame = 1 
Query:  271 MVMLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDRRAAADMGGLLNAKFSDGLAQSRLRFVGD 489
            MVMLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSA               NAKFSDGLAQSRLRFVGD
Sbjct:    1 MVMLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSA---------------NAKFSDGLAQSRLRFVGD 58
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BLAST of mRNA_Ecto-sp13_S_contig1399.3106.1 vs. uniprot
Match: A0A4D9DHK9_9STRA (SRP54 domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DHK9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.780e-9
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  274 VMLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDRRAAADMGGLLNAKFSDGLAQSRLRFVGD 489
            +M+FDFI+KRA+EG++Q QN+ T    G+  EAL +T++YVK +R   D   L  AK  +GLA+SR R +GD
Sbjct:   73 MMVFDFIRKRAEEGIQQVQNIATKTAEGKFVEALGDTASYVK-KRQEIDAENL--AKLQEGLAKSRQRLMGD 141
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BLAST of mRNA_Ecto-sp13_S_contig1399.3106.1 vs. uniprot
Match: W7U0S2_9STRA (Signal recognition particle-docking protein FtsY n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0S2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 3.150e-9
Identity = 35/72 (48.61%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:  274 VMLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDRRAAADMGGLLNAKFSDGLAQSRLRFVGD 489
            +M+FDFI+KRA+EG++Q QN+ T    G+  EAL +T++YVK +R   D   L  AK  +GLA+SR R +GD
Sbjct:   73 MMVFDFIRKRAEEGIQQVQNIATKTAEGKFVEALGDTASYVK-KRQEIDAENL--AKLQEGLAKSRQRLMGD 141
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BLAST of mRNA_Ecto-sp13_S_contig1399.3106.1 vs. uniprot
Match: A0A7S2USP8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USP8_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.930e-6
Identity = 26/42 (61.90%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:  277 MLFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKD 402
            M+FDFI+KRAQEGVEQ  N+   A  G+L +ALKET+ YVK+
Sbjct:   58 MVFDFIRKRAQEGVEQVANIAEKAAEGKLADALKETNEYVKE 99
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BLAST of mRNA_Ecto-sp13_S_contig1399.3106.1 vs. uniprot
Match: A0A7S0GH49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GH49_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 8.840e-6
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:  280 LFDFIKKRAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDRRAAADMGGLLNAKFSDGLAQSRLRFVGD 489
            +FDF KKRAQEG+EQ  +L +A   G+L E L++ ++Y ++           N  F++GLA+SR R + D
Sbjct:   52 VFDFFKKRAQEGIEQLGDLASATAQGKLGEGLQKAASYTQET----------NQAFAEGLAKSRTRLLYD 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1399.3106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FVJ7_ECTSI2.670e-5589.70PFtsY, plastid signal recognition particle recepto... [more]
A0A6H5KTL2_9PHAE1.510e-2279.45SRP54 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A4D9DHK9_9STRA2.780e-948.61SRP54 domain-containing protein n=1 Tax=Nannochlor... [more]
W7U0S2_9STRA3.150e-948.61Signal recognition particle-docking protein FtsY n... [more]
A0A7S2USP8_9STRA7.930e-661.90Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0GH49_9STRA8.840e-640.00Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1399contigEcto-sp13_S_contig1399:2..1505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score193.4
Seed ortholog evalue8.5e-47
Seed eggNOG ortholog2880.D7FVJ7
Model size489
KEGG koko:K03110
KEGG TC3.A.5.1,3.A.5.2,3.A.5.7
KEGG Pathwayko02024,ko03060,ko03070,map02024,map03060,map03070
KEGG ModuleM00335
Hectar predicted targeting categorychloroplast
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
Exons2
EggNOG free text desc.7S RNA binding
EggNOG OGsCOG0541@1,KOG0780@2759
Ec32 ortholog descriptionPFtsY, plastid signal recognition particle receptor
Ec32 orthologEc-15_003560.1
Cds size489
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.313027-CDS-Ecto-sp13_S_contig1399:1..561681462746.313027-CDS-Ecto-sp13_S_contig1399:1..56Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1399 2..56 -
1681462746.326057-CDS-Ecto-sp13_S_contig1399:1071..15051681462746.326057-CDS-Ecto-sp13_S_contig1399:1071..1505Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1399 1072..1505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1399.3106.1prot_Ecto-sp13_S_contig1399.3106.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1399 2..1505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1399.3106.1

>prot_Ecto-sp13_S_contig1399.3106.1 ID=prot_Ecto-sp13_S_contig1399.3106.1|Name=mRNA_Ecto-sp13_S_contig1399.3106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MMMLALGTALCGAASFPHAHAFAPSAMLSSAASNAFISRRGFVSSSTESV
EERLTQAAAASGNAATRSTAAATTQRRRRQQQGGGSGGSGMVMLFDFIKK
RAQEGVEQTQNLVTAAQTGRLDEALKETSAYVKDRRAAADMGGLLNAKFS
DGLAQSRLRFVGD
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mRNA from alignment at Ecto-sp13_S_contig1399:2..1505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1399.3106.1 ID=mRNA_Ecto-sp13_S_contig1399.3106.1|Name=mRNA_Ecto-sp13_S_contig1399.3106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1504bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1399:2..1505- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATGCTGGCGCTGGGCACTGCCCTGTGTGGGGCTGCCAGCTTCCC
GCACGCCCATGCCTTCGCTCCGTCCGCGATGCTCTCATCGGCAGCCTCGA
ACGCCTTCATCTCGAGGCGAGGTTTCGTGTCGTCTTCGACCGAGTCTGTA
GAAGAGCGGTTGACCCAGGCAGCAGCAGCATCCGGCAACGCTGCTACCAG
GAGTACTGCTGCTGCTACCACCCAGCGGAGACGAAGGCAGCAGCAAGGCG
GCGGTAGTGGTGGTAGTGGCATGGTGATGCTGTTCGATTTCATCAAGAAG
CGTGCGCAGGAGGGGGTGGAGCAGACGCAGAACCTGGTAACCGCGGCGCA
GACCGGGCGGCTCGACGAGGCGCTCAAGGAGACGTCGGCGTACGTCAAGG
ACAGGCGAGCCGCTGCTGATATGGGGGGGCTTCTGTCGGCCTAGCCAGCT
GCTGCTGTCCCATTTAGTTGTGTGCTGGCGTGTCGTTAGATCGTTTGTGT
TCGCCATAACGGGAGTAACGTCGAAGCTCAAGCTGTGAGTCATACCAAAG
CTTCACCGCTAGTACGCGGGTCAGGTGCATGCATGTCAACGAGTGCAGTA
ACAGAGTCGAGCAGCAAGGGTGTGCAGCGTCTAACTGCACATAAGCGCAC
ACTCACCTCTATTGTGGGTAATCCGCATCAGAAGAAAGCGGACTGCAGTA
TTTCGGTGCTGCTGTCGTGGTGCGTGCCAACCAAGAGCTGACATCTACAA
CAAGTTAGCGTCGAGCCCCGTATTTCTCTGCCGTAAGTGCCGTCAACCGC
TATACCGAAGAGGGCAATACGATAGTCTCAATCTCTGTGCGTGCGCCGGA
TTGACTCCCTCTCCTATTGGGGGTAGTTGCTCCTGCTGAGGAGCCGCGGG
CAGCTGTTCTACCACACCGCTCTCTAGTCCATGGCCTAGGCCATACTATT
GCGTCGTTGTCATCAAAGGTTTTGCGGGCAGCAGTAGCACCAACATGCAG
CAACGCGCGCGGCGGCCTTGCGCGCACGCTTGGCCACTGCGGCGCGTTGA
TTGCCCTCTGCTCTTGCATGACGGCGCATTCAGTCGGTACACAGCAGCCG
GTGCGACCCCACCTCGTGCTGATGTTGTCACCGCCAACGTCCATTGAGTG
TAACCGTGATTTCCCCGGGACTATTTCGCGGCTCCTCCAGCGTGCGAAGA
TCACTTGCTTCGCCGGTTTCCCTCACCTTGTCTTCGGCTTGACGTCAAAA
ATGTCAACTGGAGCCTATTAGGTGCCTTTTATACCCGTGTTCACCAGCCT
ACCCCTGTCGCCCCCATTTCCGTGCTTGGCCCCCCCACCTCCCAACCTCA
TGCCCTCCCTCCTTGTCTGATACTGTATCTCATCACCCCCTCCCCCCCCC
CTCTGTTCTTGTCTTTGTACCCCGTGTCTCTTTCCTTCTCTTTATCCAGG
AACGCAAAGTTTTCGGACGGCCTGGCGCAGAGCCGGCTTCGCTTTGTGGG
AGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1399:2..1505-

>mRNA_Ecto-sp13_S_contig1399.3106.1 ID=mRNA_Ecto-sp13_S_contig1399.3106.1|Name=mRNA_Ecto-sp13_S_contig1399.3106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1399:2..1505- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGATGCTGGCGCTGGGCACTGCCCTGTGTGGGGCTGCCAGCTTCCC
GCACGCCCATGCCTTCGCTCCGTCCGCGATGCTCTCATCGGCAGCCTCGA
ACGCCTTCATCTCGAGGCGAGGTTTCGTGTCGTCTTCGACCGAGTCTGTA
GAAGAGCGGTTGACCCAGGCAGCAGCAGCATCCGGCAACGCTGCTACCAG
GAGTACTGCTGCTGCTACCACCCAGCGGAGACGAAGGCAGCAGCAAGGCG
GCGGTAGTGGTGGTAGTGGCATGGTGATGCTGTTCGATTTCATCAAGAAG
CGTGCGCAGGAGGGGGTGGAGCAGACGCAGAACCTGGTAACCGCGGCGCA
GACCGGGCGGCTCGACGAGGCGCTCAAGGAGACGTCGGCGTACGTCAAGG
ACAGGCGAGCCGCTGCTGATATGGGGGGGCTTCTGAACGCAAAGTTTTCG
GACGGCCTGGCGCAGAGCCGGCTTCGCTTTGTGGGAGAC
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