mRNA_Ecto-sp13_S_contig13987.3105.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13987.3105.1
Unique NamemRNA_Ecto-sp13_S_contig13987.3105.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: D8LRY5_ECTSI (N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY5_ECTSI)

HSP 1 Score: 1702 bits (4409), Expect = 0.000e+0
Identity = 1073/1409 (76.15%), Postives = 1105/1409 (78.42%), Query Frame = 1
Query:    4 EQAKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEESSDEEGEVKSSVAAEGSKDAGFAALVKSRAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVGASSAVGGAGILGGSGGGPTGGFTFGTPVPPVAKTATAGPTAPVDSGTGGFPFGASSAVVGATCSSAASSKPRAGTTAAGGFTFGAPLVTESSALAPAAGPSAATLATAKVVVADVSDDDGAXXXXXXXXXXXXXXRAKAEAAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICKDGRLERQAFLAWYMDWLFGEEESSDEEGEVKSSVAAERSKDAGFAALVKSQAAGWKCAACLVSNAEAAXXXXSCETVRPGQEGKVGASCVAGG-GILGGSGGGLTGAFTFGSPVAPVDKTAAASSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGTNAAEGFTFGAPVSAASAADTGAATPATVLADKAEVAPKVVGNKSDDDSDGGIDSDGWDEEERKEEQAKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEESSDEEGEVKSSVAAERSKDAGFAALVRSQAGGWKCAACLVSNAEAAVKCASCETAKPGEERNVGTGILGGPGSGSAGGFTFGTPCNTAVAAAAEAGKVSFTTAVATNAAGGFSFGVSPPAQTSAVPAEKPESKPGAGSGDTGGDLAGGGGLISRSSTGGFTFGSLPSAAADEHAVAISSGSSVDVGGSDSDTGSDSGDEEERREEKAKAEKAFAEVDSAAKGWVEESQFEALMEAVGTTYAIEDHKPKLLAICTDGRLERQSFLAWYMDWLFGEEESSDEEGQVESRVVAKGEGSKDAGFASLVRRQAGGWKCPACLVSNAEAALKCASCEAAKPGEGDQVAASKVAGGAGILGGSGSGPTGGFLFGSSVAPVAKTAVASATSSAGSSGGRFSFGDPLPASGATPSPAASLQPSVGTNAAGGFTFGAPVAAKSSASATDTAPSPGVVPVDTAEGEPALVADGSDVDSDHDXXXXXXXXXXXAKAEKAFTEVDSAAKGWVEKSQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQAFLTWYMDWLFGEEESSDDEWGEGDESSPNAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVAASGVLGGAGILGGSSGASGXXXXFVFGAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGSVPVERPRGRGNGGRETXXXXXXXXXAGLTSKGADPPAGEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHFFGPGSRGEVDAQGEGVADAGSSPRAGGCL 4227
            EQAKAE AFDKVD AAKGWVEESQFEALMEAVGTTYAVEDHKPKLL + TDGRLE+QAFL WYMDWLFG+EESSDEEGEVKS VAAEGSK AGFAALVKS+AGGWKCAACLVSNAEAAVKC SCETVRPG+EGKVGASSAVGGAGILGGSGGGPTGGFTFG PVP VAKTATAG T P DSG                 SSAASSKP AGT A          VTES    PAAGPSAAT+ATAKVVVA        XXXXXXXXXXXXX RAKAEAAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAIC DGRLE+QAFLAWYMDWLFG+EESSDEEGEVKS VAAE SK AGFAALVKSQA GWKCA CLVSNAEAA    SCETVRPGQEGKVGAS   GG GILGGSG G TG FTFGSPVAPV KTAAASS A                              SAGTNA         V AASAADTG ATPA V ADKAEVAP VVGN                        AKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFG+EESSDEEGEVKSSVAAE SKDAGFAALV+SQAGGWKCAACLVSNAEAA+KC SCETAKPGEE NVG GILGGP SGSAGGFTFGTPCNTAVAAAAEA +VS TTAVA      FSFGVSPPAQTSA PAEKPESKP AGSGDTGG                 TFGSLP AAADEHAVAISSGSSVDVGG  SDTGS   D  ERR  KAKAEKAFAEVDSAAKGWVEESQFEALMEAVGTTYA+EDHKPKLLAICTD RLERQ+FLAWYMDWLFG+EESSDEEG+V+S V A  EGSKDAGFA+LV+ QAGGWKC  CLVSNAEAALKC SCE  +PG+  +V AS   GGAGILGGSG GPTGGF FGS VAPVAKTA AS+T+ AGS           PASGATPSPA S +PS GTNA          AAKSSASATD AP+PGVV VDT EGEPALVADGSDVDSD  XXXXXXXXXX AKAEKAFTEVDSAAKGWVE+ QFEALMEAVGTTYAVEDHKPKLLAICT GRLE+Q+FL WYMDWLFG+EESSDDEWGEGDESSPNAVGRAPKDAGFA+LVKSQAGGWKCAACLVSNAEAA+KCASCETVRPGREGKVAASGVLGGAGILG SSGAS XXXXFVFGAP    XXXXXXXXXXXXXXX             TG SVP E PRGR N     XXXXXXXXX GL SKGADPPA     XXXXXXX                            HFFGPGSRGEVDAQGEGV DAGSSPRAGG L
Sbjct: 1139 EQAKAETAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLMVSTDGRLEKQAFLAWYMDWLFGDEESSDEEGEVKSGVAAEGSKIAGFAALVKSQAGGWKCAACLVSNAEAAVKCVSCETVRPGQEGKVGASSAVGGAGILGGSGGGPTGGFTFGAPVPTVAKTATAGSTVPADSGAXXXXXXXXXXXXXXXSSSAASSKPSAGTNAXXXXXXXXXXVTESXXXXPAAGPSAATVATAKVVVAXXXXXXXXXXXXXXXXXXXXXERAKAEAAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLEKQAFLAWYMDWLFGDEESSDEEGEVKSGVAAEGSKIAGFAALVKSQAGGWKCAVCLVSNAEAALKCVSCETVRPGQEGKVGASSAVGGAGILGGSGSGPTGGFTFGSPVAPVAKTAAASSAAPAGSSGGGFSFGAPSPAPGTIPSPAASLQPSAGTNAXXXXXXXXXVKAASAADTGTATPAIVPADKAEVAPTVVGNNXXXXXXXXXXXXXXXXXXXXXXSAKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGDEESSDEEGEVKSSVAAEGSKDAGFAALVKSQAGGWKCAACLVSNAEAALKCVSCETAKPGEEGNVGAGILGGPSSGSAGGFTFGTPCNTAVAAAAEASRVSSTTAVAXXXXXXFSFGVSPPAQTSAAPAEKPESKPCAGSGDTGGXXXXXXXXXXXXXXXXLTFGSLPGAAADEHAVAISSGSSVDVGGGGSDTGSXXXDXXERRXXKAKAEKAFAEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDRRLERQAFLAWYMDWLFGDEESSDEEGEVKSGVAA--EGSKDAGFAALVKSQAGGWKCAVCLVSNAEAALKCVSCETVRPGQEGKVGASSAVGGAGILGGSGGGPTGGFTFGSPVAPVAKTAAASSTAPAGSXXXXXXXXXXSPASGATPSPAPSSKPSAGTNAXXXXXXXXXXAAKSSASATDIAPAPGVVSVDTVEGEPALVADGSDVDSDXXXXXXXXXXXXRAKAEKAFTEVDSAAKGWVEEGQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQSFLAWYMDWLFGDEESSDDEWGEGDESSPNAVGRAPKDAGFASLVKSQAGGWKCAACLVSNAEAALKCASCETVRPGREGKVAASGVLGGAGILGXSSGASXXXXXFVFGAPVPGAXXXXXXXXXXXXXXXNRDEREVAAKAPPTGCSVPAEGPRGRRN--XXXXXXXXXXXXXGLASKGADPPA-----XXXXXXXGFTSPTPRVVATAPSRDGGGVGGDGGGSHFFGPGSRGEVDAQGEGVPDAGSSPRAGGIL 2538          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: A0A6H5K2C3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2C3_9PHAE)

HSP 1 Score: 590 bits (1521), Expect = 4.520e-185
Identity = 427/794 (53.78%), Postives = 464/794 (58.44%), Query Frame = 1
Query:   22 AAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEESSDEEGEVKSSVAAEGSKDAGFAALVKSRAGGWKCAACLVSNAEAAVKCASCETVRP--GREGKVGASSAVGGAGILGGSGGGPTGGFTFGTPVPPVAKTATAGPTAPVDSGTGGFPFGASSAVVGATCSSAASSKPRAGTTAAGGFTFGAPLVTESSALAPAAGPSAATLATAKVVVADVSDDDGAXXXXXXXXXXXXXXRAKAEAAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICKDGRLERQAFLAWYMDWLFGEEESSDEE---GEVKSSVAAERS-KDAGFAALVKSQAAGWKCAACLVSNAEAAXXXXSCETVRPGQEGKVGASCVAGG-GILGGSGGGLTGAFTFGSPVAPVDKTAAASSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGTNAAEGFTFG---APVSAASAADTGAATPATVLADKAEVAPKVVGNKSDDDSDGGIDSDGWDEEERKEEQAKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEESSDEEGEVKSSVAAERSKDAGFAALVRSQAGGWKCAACLVSNAEAAVKCASCETAKPGEERNVGTGILGGPGSGSAGGFTFGTPCNTAVAAAAEAGKVSFTTAVATNAAGGFSFGVSPPAQTSAVPAEKPESKPGAGSGDTGGDLAGGGGLISRSSTGGFTFGSLPSAAADEHA 2373
            AAFD++D A  GWV   +FEAL+ + G  +  E H   LL +C   RL R  FL WY      + E++   G  + +    G                                       RP   R G   +SS V  AG                    P A        A    G GG P G    VV  T S   SS                    E  A A A G S               D++                +AKAE AF +VD+AAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAIC  GRLERQAFLAWYMDWLFGEEESS +E   G+  S  A  R+ KDAGFAALV+ QA GWKCAACLVSNA+A     SCE VRPGQE KV AS V GG GILGGSG G TG  TFGSPV PV KTA ASS A       XXXXXXX                SAGTN+A         A  S+ASA   G +T +   A++AEV P      ++D                       EAAFDKVD AAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICT GRLERQAFLTWYMDWLFGEEESS+EEGE+K SVAAE SKDAGFAALV+ QAGGWKC ACLVSNAE A+KCASCETAKPGEE NV  GILGGP SGSAGGFTFGTPCNTAV A AE GKVS T AVATNAAGGFSFGVSPPAQT AVPAE+PESKP AGSG  GGD AGG G  S SST GFT G+LP  AADEHA
Sbjct:  509 AAFDRLDGAGTGWVGREEFEALVGSAGLPFETEKHGQALLKLCVP-RLPRDRFLEWYAGARREQREAAGAAGAAREAAVGSGG--------------------------------------RPPRSRSGSDYSSSGVPAAGK-------------------PKAAAVDXXAVADQGGGDGGVPAG----VVRETGSGGTSSDK------------------EDDADADATGES--------------GDEE-----------ERREEKAKAEKAFTEVDSAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLERQAFLAWYMDWLFGEEESSHDEWGEGDESSPNAVGRAPKDAGFAALVRHQAGGWKCAACLVSNAKAVLKCASCEAVRPGQEDKVVASGVLGGAGILGGSGSGPTGGVTFGSPVPPVAKTATASSIAPASSTGGXXXXXXXLPASGARSSSAALLHPSAGTNSAXXXXXXXXXAAKSSASAPAAGTSTASIASANEAEVEPTESPVNAED-----XXXXXXXXXXXXXXXXXXEAAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTAGRLERQAFLTWYMDWLFGEEESSEEEGELKPSVAAEGSKDAGFAALVKRQAGGWKCTACLVSNAEVALKCASCETAKPGEEGNVRAGILGGPSSGSAGGFTFGTPCNTAVVAVAETGKVSSTIAVATNAAGGFSFGVSPPAQTGAVPAEEPESKPCAGSGGIGGDSAGGAGFTSGSSTSGFTCGALPGPAADEHA 1192          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: A0A6H5JYN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYN5_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 1.350e-49
Identity = 96/114 (84.21%), Postives = 99/114 (86.84%), Query Frame = -2
Query: 3396 MPAPPNTPDAATLPSRPGLTVSHDAHFTAASALDTKHAAHFQPPA*LFTRAANPASFGARPTALGLLSSPSPHSSSDDSSSPNSQSMYHVRNACFSNRPAVQIASSFGLWSSTA 3737
            MPAPPNTPDA TL S PGLT SHDAHF  A A DTKHAAHFQPPA L +R ANPASFGARPTA GLLSSPSPHSS DDSSSPNSQSMYH +NAC SNRPAVQIA+SFGLWSSTA
Sbjct:    1 MPAPPNTPDATTLSSCPGLTASHDAHFNTALAFDTKHAAHFQPPAWLISRDANPASFGARPTASGLLSSPSPHSSCDDSSSPNSQSMYHAKNACLSNRPAVQIANSFGLWSSTA 114          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: A0A6G0XP53_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP53_9STRA)

HSP 1 Score: 139 bits (351), Expect = 2.400e-29
Identity = 184/754 (24.40%), Postives = 295/754 (39.12%), Query Frame = 1
Query:  823 KAEAAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICKDGRLERQAFLAWYMDWLFGEEESSDEEGEVKSSVAAERSKDAGFAALVKSQAA---------GWKCAACLVSNAEA-AXXXXSCETVRPGQEGKVGASCVAGGGILGGSGGGLTGAFTFGSPVAPVD--KTAAASSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGTNAAEGFTFGAPVSAASAADTGAATPATVLADKAEVAPKVVGN----------------------KSDDDSDGGIDSDGWDEEERKEEQA----------KAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEESSDEEG-------EVKSSVAAERSKDAGFAALVRSQAGGWKCAACLVSNAEA-AVKCASCETAKPGEERNVGTGILGGPGSGSAGGFT-FGTPCNTAVAAAAEAGKVSFTTAVATNAAGGFSFGV-SPPAQTSAVPAEKPESKPGAGSGDTGGDLAGGGGLISRSSTGGFTFGSLPSAAADEHAVAISSGSSVDVGGSDSDTGSDSGDEE----------ERREEKAKAEKAFAEVDSAAKGWVEESQFEALMEAVGTTYAIEDHKPKLLAICTDGRLERQSFLAWYMDWLFGEEESSDEEGQVESRV-----VAKGEGSKDAGFASLVRRQAGGWKCPACLVSNA-EAALKCASCEAAKPGEGDQV 2874
            KA+AAFD VD   KG +  + FE L EA+GT Y+ E+H   +  + + G + ++ F+AWY+ W+F + E         ++ A +   +A   +  + +AA          WKC  C++ N  A A    SC++  P       AS  AG                FG+ VAP    K  A SST                               ++  + A+ F+FG P      +   A+TP++                                     K   + + G D++    E+                K   AFDKVD+   G +  + FE L EA+GT Y+ ++H   L  +   G + +  F+TWY+ W+F +E+ SDEE        +  +++ +E  + A FA   ++  G WKC  C++ N +  A KCASCET  P   + + +          AGGFT FG                             F FGV S P + +  P+  P +     S           G+ S ++   F+FG       +E +         D G    DT +   DE+                 KA  AF +VD+ A G +  S+FE + +A+GT Y+ ++H   +  +  +G + ++ F+AWY++W+F +           +        AK    +            G WKC  C++ N  E A +C SCE+  P    +V
Sbjct:  441 KAKAAFDAVDKKGKGTIPLTDFEKLFEALGTVYSAEEHTRTIHKLDRKGVIRKEDFVAWYVQWIFADFEDDXXXXXXANAGAKDVDPNAPLKSEAEIKAAFAKFAPPSGSWKCEVCMIMNPTAGAPKCISCDSPNPNATKSAPASPAAG----------------FGAFVAPPGSFKGFAVSST----------------------DKPTGFGAPTSAPSGAQAFSFGVP------SQPPASTPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKTSNKEYGSDTNNVYVEDXXXXXXXXXXXXXXXXKVSTAFDKVDSTHSGKIPVADFEKLFEALGTVYSADEHTRTLKKLERAGYVHKSDFVTWYITWIFADEDESDEEEATSVPDVDPSATIKSEAERKAAFAKF-QAPTGSWKCETCMIMNTDPKAAKCASCETPNPNAPKEIKSATSSSASPFGAGGFTPFGVSTEKKA----------------------FGFGVTSTPDEKTRTPSAAPSTAQPTFSF----------GVPSNNNPPAFSFGVKTEEKVNEKS---------DYG---KDTDNVFNDEDGSXXXXXXXXXXXXXXXKANDAFDQVDTEATGKIPSSKFENIFDALGTVYSADEHTRTIKKLDKNGYIFKKDFVAWYLNWIFADXXXXXXXXXXSAAPDFDPNAAKKSADEIKNAWKKFEAPPGSWKCSVCMIVNKDENASRCVSCESPNPNAKSEV 1105          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: A0A8J2SJ63_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ63_9STRA)

HSP 1 Score: 139 bits (349), Expect = 3.780e-29
Identity = 169/522 (32.38%), Postives = 216/522 (41.38%), Query Frame = 1
Query: 2422 DTGSDSGDEEERREEKAKAEKAFAEVDSAAKGWVE--ESQFEALMEAVGTTYAIEDHKPKLLAICTDGRLERQSFLAWYMDWLFGEEESSDEEGQVESRVVAKGEGSKDAGFASLVRRQAGGWKCPACLVSNAEAALKCASCEAAKPGEGDQVAASKVAGGAGILGGSGSGPTGGFLFGSSV---------APVAKTAVASAT----------SSAGSSGGRFSFGDPLPASGATPSPAASLQPSVGTNA----AGGFTFGAPV--AAKSSASATDTAP------------------------------SPGVVPVDT----------------AEGEPALVADGS-----------------DVDSDHDXXXXXXXXXXXAKAEKAFTEVDSAAKGWVEKSQFEALMEAVGTTYAVEDHKPKLLAICTAGRLEKQAFLTWYMDWLFGEEESSDDEWGEGDESSPNAVGRAPKDAGFAALVKSQAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVAASG 3717
            D   DSGDEEER EE+  A +AF   D+ A G  E   S+F+ALMEA+GTTY  E+H+  L  +   G + R +F+ WY+DW+ G+ +S               E    A +ASL   + G WKC  C V N + A KCA+CE   P                       GP GGF FGS           AP    A               ++A  +           A  A P+P           A    A GF FGAP   A KS     D AP                              S GVVPVD                  E + A V DGS                 +V  D   XXXXXXXXX   A +AF  V   A   V  S+F+ALMEA+GTTY  E+H+  L  +   G + + AF+ WY+DW+ G+ +S            P A  +A   A +A+L  ++ G WKC  C V N + A KCA+CET  P    K AASG
Sbjct:  955 DASDDSGDEEEREEERGNAREAF---DTVADGKTEVPSSKFQALMEALGTTYCEEEHRRTLRKLAPGGTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAAATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETPNPAXXXXXXXXXXX----XXXXXSVGP-GGFSFGSXXXXXXXXXXXAPAPAPAXXXXXXXXXXXXXXXAAASPAAXXXXXXXXAXAXXAAPAPXXXXXXXXXXVATAGGADGFRFGAPADEAPKSPQEQWDAAPRADPDAPPPEPSAGDSAEAAKARSAFDEVDSSGVVPVDRFEDLLDSVGEGFHGDELEAQRAKVDDGSGRITREAFARYYVALCANVGEDDSDXXXXXXXXXSQSAREAFDTVADGATS-VPSSKFQALMEALGTTYCEEEHRRTLRKLAPGGTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAA--ATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETPNPAAPQKAAASG 1465          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: A0A0P1B0K9_PLAHL (Nuclear pore complex n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0K9_PLAHL)

HSP 1 Score: 124 bits (312), Expect = 5.520e-25
Identity = 122/447 (27.29%), Postives = 205/447 (45.86%), Query Frame = 1
Query: 1618 EEERKEEQAKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEE-SSDEEGEVKSSVAAERSK-------DAGFAALVRSQAGGWKCAACLVSNAEAAVKCASCETAKPGEERNVGTG---ILGGPGSGSAGGFTFGTPCNTAVAAAAEAGKVSFTTAVATNAAGGFSFGVSPPAQTSAVPAEKPESKPGAGSGDTGGDLAGGGGLISRSSTGGFTFG----SLPSAAADEHAVAISSGSSVDVGGSDSDTGSDSGDEEERREE-----KAKAEKAFAEVDSAAKGWVEESQFEALMEAVGTTYAIEDHKPKLLAICTDGRLERQSFLAWYMDWLFGEEESSDEEGQVESRVVAKGEGSKD--AGFASLVRRQAGGWKCPACLVSNAEAALKCASCEAAKPGEGDQVAASKVA 2892
            +EERKEE+  A   F  +      ++   QF  L + +G+TY  E H   L  +  DG++    F++WY++W+FG+E+  SDE+  +   +  E +K       +A F+    ++ G WKCA C+VSN     KC++CET  P   + V       +   GS  +GGF+F       V+   ++  +SF+       +  FSFG  P   T+A   +   S   +G+G T   +         + T  F FG       +   D  + ++   ++ + G +D +  + S  E           +A A   F  + S    ++  + F  L   +G+TY  E+H   + ++  DG++    F++WY++WLFG E+S  EE  +  +       SK+  A   S      G WKC  C+V+NA   LKC++CE   P    ++A +  A
Sbjct:  461 DEERKEEEDNARTKFRTIALDGANFILSEQFPNLFKVMGSTYDEEVHAATLDDLRKDGKIYEDDFVSWYVNWIFGDEDYESDEDKSICEPLKTETTKMKSKEEIEAAFSKFTVAE-GSWKCAVCMVSNGPDENKCSACETPNPAAPKIVAPAKSVSVTSAGSIGSGGFSF------PVSIEKDSKSLSFSFGGPEAKSTEFSFGNMP--TTTACSGQN--SSTSSGTGFTFSTMTS---FPGATDTSAFNFGVKADDAQNTVNDTESSSVKKTTAHEYGQNDENEFASSDGESXXXXXXXXXXEATARALFRTLTSDGADFIASTLFPKLFAVLGSTYDEEEHASTVESLSRDGKIYEDDFVSWYVNWLFGAEDSESEEPSIPPKAEPVKMKSKEEIAAVFSKYTATEGSWKCAVCMVNNAPHLLKCSACETPNPASSKEIAPATTA 893          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: A0A8J5MAM4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5MAM4_9STRA)

HSP 1 Score: 104 bits (260), Expect = 1.140e-18
Identity = 108/410 (26.34%), Postives = 180/410 (43.90%), Query Frame = 1
Query: 1639 QAKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEES-------SDEEGEVKSSVAAERSKDAGFAALVRSQAGGWKCAACLVSNAEAAVKCASCETAKPGEERNVGTGILGGPGSGS---AGGFTFGTPCNTAVAAAAEAGKVSFTTAVATNAAGGFSFGVSPPAQTSAVPAEKPESKPGAGSGDTGGDLAG----------------------GGGLISRS--STGGFTFG-----SLPSAAADEHAVAISSGS------------SVDVGGSDSDTGSDSGDEEE-------RREEKAKAEKAFAEVDSAAKGWVEESQFEALMEAVGTTYAIEDHKPKLLAICTDGRLERQSFLAWYMDWLFGEEESSDEE 2694
            Q KA   F  + +    ++   QF  L +A+G+TY  E+H   +  +  DG++    F++WY++W+FG+++S       +    E+K +    + + A   +   ++ G WKCA C+VSN   A+KC++CETA P   + V               +GGF+F  P +T                   + A  FSFGV+PPA + A  A KP          TG    G                      G    S +  +T GF+FG     S  +AA  ++A A+ S              S + G +D +  ++S  E           ++KAK    F  + S    ++   QF  L +A+G TY  E+H   + ++  DG++    F++WY++W+FG+++S  EE
Sbjct:  471 QDKARTTFRTMASDGADYIASEQFPKLFKAMGSTYDEEEHASTVEHLEKDGKIYENDFVSWYVNWIFGDDDSXXXXXEAAPASSELKPAEMKSKEEIAAAFSKFTAKEGSWKCAVCMVSNGPDAMKCSACETANPAAPKVVAXXXXXXXXXXXXXXSGGFSF--PVSTG----------------GDSKASSFSFGVTPPADSDAADASKP----------TGFSFGGXXXXXXXXXXXXXXXXXXXXXFGAAAASTAPAATSGFSFGVNAGGSPDAAATSKNAAAVDSSVKDTKPSSPKKTVSHEYGQNDENEFAESDGESSDXXXXXXXXQDKAKV--MFRTIASDGADYIASEQFPKLFKAMGATYDDEEHATTVKSLEKDGKIYENDFVSWYVNWIFGDDDSDSEE 850          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: D0MV19_PHYIT (Nuclear pore complex protein, putative n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MV19_PHYIT)

HSP 1 Score: 103 bits (257), Expect = 2.580e-18
Identity = 171/719 (23.78%), Postives = 267/719 (37.13%), Query Frame = 1
Query:   76 FEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEES-SDEEGEV---KSSVAAEGSKDAGFAALVK--SRAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVG--ASSAVGGAGILGGSGGGPTGGFTFGTPVPPVAKTATAGPTAPVDSGTGGFPFGASSAVVGATCSSAASSKPR---------------------------------------AGTTAAGGFTFGAPLVTESSALA-----------PAAGPSAATLATAKVVVADVSDDDGAXXXXXXXXXXXXXXRAKAEAAFDKVDNAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICKDGRLERQAFLAWYMDWLFGEEESSDEEGEVKSSVAAERSKDAGFAALVKSQAAGWKCAACLVSNAEAAXXXXSCETVRPGQEGKVGASCVAGGGILGGSGGGLTGAFTFGSPVAPVDKTAAASSTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAGTNAAEGFTFGAPVSAASAADTGAATPATVLADKAEVAPKVVGNKSDDDSDGGIDSDGWDEEERKEEQAKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEES-SDEEGEVKSSVAAE---RSKDAGFAALVRSQA--GGWKCAACLVSNAEAAVKCASCETAKPGEERNV 2040
            F  L +A+G TY  E+H   + ++  DG++    F+TWY++W+FG++ES SDEE +V   +S  A   SK+   AA  K  ++ G WKCA C+VSN   A+KC++CET  P     +    +++   AG +G      +GGF+F         T +       DS    F FG + A   A  S+A ++K                                           + + GG T G+   T +S  A           PA+   A +    +    + ++ DG       XXXXXXXX  KA   F  +      ++    F  L +A+G TY  E+H   +  + KDG++    F+ WY++W+FG+ +S D + E    VA+++                                                                     T        D+   A                                                                                  D+ SD        +EEERKEE   A   F  +      ++   QF  L++A+G TY  E+H   +  +  DG++    F+TWY++W+FG+E S SDE+ +  +S A     +SK+   AA  +  A  G WKCA C+VSN   A+KC++CET  P   + +
Sbjct:  494 FPKLFKAMGATYDEEEHTRTIESLEKDGKIYENDFVTWYVNWIFGDDESESDEEVDVSAVESKPAEMKSKEEIAAAFSKFTAKEGSWKCAVCMVSNGPDAMKCSACETPNPAAPKTIAPVTTASANSAGSIG------SGGFSF------AVSTGS-------DSKPSSFSFGVTPA---AGFSAADATKXXXXXXXXXXXXXXXXXXSNTAPXXXXXXXXXXXXSXASTATSSVSFGGDTSGSTDATSTSKTAAAVDSLVKDTEPASPKKAISHEYGQNDENEFAESDG---ESSDXXXXXXXXXXKARTTFRSIAADGADYIASELFPKLFKAMGATYDGEEHTNTMTDLEKDGKIYENDFVTWYVNWIFGDVDS-DSDDEDTPQVASQK---------------------------------------------------------------------TISHEYGQNDENEFADC--------------------------------------------------------------------------------DESSD--------EEEERKEEADTARVTFRTIAADGADYIVSEQFPKLIKAMGATYDEEEHTNTVKDLEKDGKINENDFVTWYVNWIFGDEASDSDEDDDAPASSAKPAGMKSKEEIAAAFSKFTAKEGRWKCAVCMVSNGPDAMKCSACETPNPAAPKTI 1029          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: A0A7R9W639_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W639_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 3.720e-18
Identity = 72/187 (38.50%), Postives = 96/187 (51.34%), Query Frame = 1
Query:   61 VEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLERQAFLTWYMDWLFGEEESSDEEGEVKSSV--AAEGSKDA--GFAALVKS---RAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVGASSAVGGAGILGGSGGGPTGGFTFG----------TPVPPVAKTATAGPTAPVDSGTGGFPFG 570
            + + +F  L+EA+GTTY  E+H+  +  I  +G++ R AF+ WY+DWLFGE E  DE  E       A + SK A  G+    KS   + G WKC  CLV N   ++KCA+CE V+PG E +V A  + G A   G  G    GGFTFG           P P  +     G  A +  G  GF FG
Sbjct:  143 IPKEKFVDLIEAMGTTYCEEEHRRTIKKIAVEGKVHRDAFVEWYVDWLFGEGEEDDEYSEXXXXXXXARDASKAAKQGWGDTFKSMGTKPGSWKCEFCLVQNDPDSIKCAACEAVKPGCEEEVAAKESSGAAASAGAIG---AGGFTFGGXXXXXXXXXAPAPAASADKKEGAMASI--GASGFNFG 324          
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Match: A0A7S4E7X3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E7X3_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 5.270e-18
Identity = 60/147 (40.82%), Postives = 80/147 (54.42%), Query Frame = 1
Query: 2422 DTGSDSGDEEERREEKAKAEKAFAEVDSAAKGWVE--ESQFEALMEAVGTTYAIEDHKPKLLAICTDGRLERQSFLAWYMDWLFGEEESSDEEGQVESRVVAKGEGSKDAGFASLVRRQAGGWKCPACLVSNAEAALKCASCEAAKP 2856
            D   DSGDEEER EE+  A +AF   D+ A G  E   S+F+ALMEA+GTTY  E+H+  L  +   G + R +F+ WY+DW+ G+ +S               E    A +ASL   + G WKC  C V N + A KCA+CE   P
Sbjct:  115 DASDDSGDEEEREEERGNAREAF---DTVADGKTEVPSSKFQALMEALGTTYCEEEHRRTLRKLAPGGTVARDAFVEWYVDWVLGDGDSDXXXXXXXXXXXPAAESKAAATWASLTAAKEGSWKCEVCDVRNDKDASKCAACETPNP 258          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13987.3105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRY5_ECTSI0.000e+076.15N/a n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepI... [more]
A0A6H5K2C3_9PHAE4.520e-18553.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYN5_9PHAE1.350e-4984.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0XP53_9STRA2.400e-2924.40Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A8J2SJ63_9STRA3.780e-2932.38Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A0P1B0K9_PLAHL5.520e-2527.29Nuclear pore complex n=1 Tax=Plasmopara halstedii ... [more]
A0A8J5MAM4_9STRA1.140e-1826.34Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
D0MV19_PHYIT2.580e-1823.78Nuclear pore complex protein, putative n=2 Tax=Phy... [more]
A0A7R9W639_9STRA3.720e-1838.50Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S4E7X3_9STRA5.270e-1840.82Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13987contigEcto-sp13_S_contig13987:242..4552 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score1723.4
Seed ortholog evalue0.0
Seed eggNOG ortholog2880.D8LRY5
Model size4230
KEGG koko:K09566
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.peptidyl-prolyl cis-trans isomerase activity
EggNOG OGsCOG0652@1,KOG0865@2759
EC5.2.1.8
Cds size4230
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03041,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.2752898-CDS-Ecto-sp13_S_contig13987:241..5221681462746.2752898-CDS-Ecto-sp13_S_contig13987:241..522Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13987 242..522 -
1681462746.2868915-CDS-Ecto-sp13_S_contig13987:603..45521681462746.2868915-CDS-Ecto-sp13_S_contig13987:603..4552Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13987 604..4552 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13987.3105.1prot_Ecto-sp13_S_contig13987.3105.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13987 242..4552 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13987.3105.1

>prot_Ecto-sp13_S_contig13987.3105.1 ID=prot_Ecto-sp13_S_contig13987.3105.1|Name=mRNA_Ecto-sp13_S_contig13987.3105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1410bp
EEQAKAEAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAIC
TDGRLERQAFLTWYMDWLFGEEESSDEEGEVKSSVAAEGSKDAGFAALVK
SRAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVGASSAVGGAGILGG
SGGGPTGGFTFGTPVPPVAKTATAGPTAPVDSGTGGFPFGASSAVVGATC
SSAASSKPRAGTTAAGGFTFGAPLVTESSALAPAAGPSAATLATAKVVVA
DVSDDDGANDSDSADEEERREERAKAEAAFDKVDNAAKGWVEESQFEALM
EAVGTTYAVEDHKPKLLAICKDGRLERQAFLAWYMDWLFGEEESSDEEGE
VKSSVAAERSKDAGFAALVKSQAAGWKCAACLVSNAEAAVKCASCETVRP
GQEGKVGASCVAGGGILGGSGGGLTGAFTFGSPVAPVDKTAAASSTAPAG
SSGGNFSFGAPYPAPGATPSPAASLQPSAGTNAAEGFTFGAPVSAASAAD
TGAATPATVLADKAEVAPKVVGNKSDDDSDGGIDSDGWDEEERKEEQAKA
EAAFDKVDTAAKGWVEESQFEALMEAVGTTYAVEDHKPKLLAICTDGRLE
RQAFLTWYMDWLFGEEESSDEEGEVKSSVAAERSKDAGFAALVRSQAGGW
KCAACLVSNAEAAVKCASCETAKPGEERNVGTGILGGPGSGSAGGFTFGT
PCNTAVAAAAEAGKVSFTTAVATNAAGGFSFGVSPPAQTSAVPAEKPESK
PGAGSGDTGGDLAGGGGLISRSSTGGFTFGSLPSAAADEHAVAISSGSSV
DVGGSDSDTGSDSGDEEERREEKAKAEKAFAEVDSAAKGWVEESQFEALM
EAVGTTYAIEDHKPKLLAICTDGRLERQSFLAWYMDWLFGEEESSDEEGQ
VESRVVAKGEGSKDAGFASLVRRQAGGWKCPACLVSNAEAALKCASCEAA
KPGEGDQVAASKVAGGAGILGGSGSGPTGGFLFGSSVAPVAKTAVASATS
SAGSSGGRFSFGDPLPASGATPSPAASLQPSVGTNAAGGFTFGAPVAAKS
SASATDTAPSPGVVPVDTAEGEPALVADGSDVDSDHDSEDEEERREEKAK
AEKAFTEVDSAAKGWVEKSQFEALMEAVGTTYAVEDHKPKLLAICTAGRL
EKQAFLTWYMDWLFGEEESSDDEWGEGDESSPNAVGRAPKDAGFAALVKS
QAGGWKCAACLVSNAEAAVKCASCETVRPGREGKVAASGVLGGAGILGGS
SGASGGGGGFVFGAPVPAAASAAPAAATSSSSTENRDEREVVAKASSTGG
SVPVERPRGRGNGGRETAAAAMAAATAGLTSKGADPPAGEGGAAGGFTSP
TPRVVGGGGFTASSRDGGGGGGGGGGGGHFFGPGSRGEVDAQGEGVADAG
SSPRAGGCL*
back to top

mRNA from alignment at Ecto-sp13_S_contig13987:242..4552-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13987.3105.1 ID=mRNA_Ecto-sp13_S_contig13987.3105.1|Name=mRNA_Ecto-sp13_S_contig13987.3105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4311bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13987:242..4552- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGAGCAGGCCAAGGCGGAGGCGGCCTTCGACAAGGTGGATACCGCCGC CAAGGGGTGGGTGGAAGAGAGCCAGTTCGAGGCCCTGATGGAGGCGGTCG GCACCACGTACGCCGTGGAGGACCACAAGCCGAAGCTGCTGGCGATCTGC ACGGATGGCCGGTTGGAGAGGCAGGCGTTCCTGACGTGGTACATGGACTG GCTGTTCGGCGAGGAGGAGTCATCGGACGAGGAGGGAGAGGTTAAGTCGA GCGTGGCCGCTGAGGGATCGAAGGACGCCGGGTTTGCTGCTCTGGTGAAG AGCCGGGCGGGTGGGTGGAAGTGCGCCGCGTGCTTGGTGTCTAACGCCGA GGCGGCTGTGAAGTGCGCGTCGTGCGAGACGGTGAGGCCGGGGCGAGAGG GTAAGGTCGGGGCGTCTAGTGCGGTGGGTGGGGCAGGCATCTTGGGAGGG TCGGGCGGCGGCCCCACGGGGGGCTTTACGTTCGGGACACCTGTCCCTCC CGTTGCCAAGACGGCGACTGCGGGGCCCACTGCTCCGGTTGATAGCGGTA CCGGGGGCTTCCCCTTCGGCGCATCTTCCGCCGTGGTAGGGGCTACATGT TCATCCGCCGCTTCGTCGAAGCCTAGGGCGGGGACCACCGCAGCGGGAGG CTTCACGTTTGGTGCGCCGCTGGTGACCGAATCGTCGGCCTTAGCGCCCG CCGCAGGACCTTCCGCGGCTACTTTAGCAACAGCCAAGGTCGTAGTGGCC GATGTCTCCGACGACGACGGTGCCAACGATAGCGATAGTGCAGACGAGGA GGAGCGCCGGGAAGAGAGAGCCAAGGCGGAGGCGGCCTTCGACAAGGTGG ACAACGCCGCCAAGGGGTGGGTGGAAGAAAGCCAGTTCGAGGCCCTGATG GAGGCGGTCGGCACCACGTACGCCGTCGAGGACCACAAGCCGAAGCTGCT CGCGATCTGCAAGGACGGCCGGTTGGAGAGGCAGGCATTCTTGGCGTGGT ACATGGACTGGCTGTTCGGCGAGGAGGAGTCATCGGACGAGGAGGGAGAG GTTAAATCGAGCGTGGCCGCTGAGAGATCGAAGGACGCCGGGTTTGCTGC TCTGGTGAAGAGCCAGGCGGCTGGGTGGAAGTGCGCCGCGTGCTTGGTGT CTAACGCCGAGGCGGCTGTGAAGTGCGCGTCGTGCGAGACGGTGAGGCCA GGGCAAGAGGGTAAGGTCGGGGCGTCTTGTGTGGCAGGCGGGGGCATCTT GGGAGGGTCGGGCGGCGGCCTCACGGGGGCCTTCACGTTCGGGTCGCCCG TTGCTCCGGTTGACAAGACGGCCGCGGCGTCTTCAACTGCTCCGGCTGGC AGCAGTGGCGGGAATTTTTCCTTTGGAGCTCCTTACCCCGCCCCAGGGGC TACACCGTCACCCGCCGCTTCGCTGCAACCTAGCGCGGGGACTAACGCAG CGGAAGGGTTCACGTTTGGCGCGCCGGTATCGGCGGCCTCAGCGGCTGAC ACAGGAGCTGCTACCCCTGCGACAGTACTGGCCGATAAGGCCGAGGTGGC GCCAAAGGTAGTGGGCAACAAATCCGACGATGATAGTGATGGTGGCATCG ACAGCGATGGTTGGGACGAGGAGGAGCGTAAGGAAGAGCAGGCCAAGGCG GAGGCGGCCTTCGACAAGGTGGATACCGCCGCCAAGGGGTGGGTGGAAGA GAGCCAGTTCGAGGCCCTGATGGAGGCGGTCGGCACCACGTACGCCGTGG AGGACCACAAGCCGAAGCTGCTGGCGATCTGCACGGATGGCCGGTTGGAG AGGCAGGCGTTCCTGACGTGGTACATGGACTGGCTGTTCGGCGAGGAGGA GTCATCGGACGAGGAGGGAGAGGTTAAGTCTAGCGTGGCCGCTGAGAGAT CGAAGGACGCCGGGTTTGCTGCTCTGGTGAGGAGCCAGGCGGGTGGGTGG AAGTGCGCCGCGTGCTTGGTGTCTAACGCCGAGGCGGCTGTGAAGTGCGC GTCGTGCGAGACGGCAAAGCCAGGGGAAGAGCGTAATGTCGGGACCGGCA TCTTGGGAGGTCCCGGCAGCGGGTCTGCGGGTGGTTTCACCTTCGGAACT CCGTGCAATACCGCTGTGGCGGCGGCGGCCGAGGCGGGCAAGGTGTCTTT CACTACCGCTGTGGCAACAAACGCCGCAGGAGGCTTTTCCTTCGGAGTTT CGCCGCCCGCTCAAACCAGCGCAGTCCCCGCTGAGAAGCCGGAGAGCAAG CCTGGTGCTGGCTCGGGGGACACTGGAGGTGATTTGGCCGGTGGCGGGGG CTTGATAAGCCGTAGCTCGACCGGCGGCTTCACGTTCGGGTCGCTACCCA GCGCAGCGGCGGATGAGCACGCGGTTGCTATCAGCTCTGGCTCGTCGGTT GATGTCGGTGGCAGCGACAGTGATACAGGGAGCGACAGCGGGGACGAGGA GGAGCGCAGGGAGGAGAAGGCCAAGGCCGAGAAGGCTTTTGCGGAGGTCG ACAGCGCCGCCAAGGGGTGGGTGGAAGAGAGCCAGTTTGAGGCCCTAATG GAGGCGGTCGGCACCACCTACGCCATCGAGGACCACAAGCCGAAGCTGCT GGCGATCTGCACGGACGGCCGGTTGGAGAGGCAGTCGTTCTTGGCGTGGT ACATGGACTGGCTGTTCGGCGAGGAGGAGTCATCGGACGAGGAAGGGCAG GTAGAAAGCAGGGTGGTCGCTAAGGGGGAAGGGTCCAAAGACGCCGGGTT TGCTTCTCTGGTGAGGCGCCAGGCGGGTGGGTGGAAGTGCCCCGCGTGCT TGGTGTCTAACGCCGAGGCGGCTTTGAAGTGCGCGTCGTGCGAGGCGGCT AAGCCAGGGGAAGGGGATCAAGTGGCGGCATCTAAGGTAGCAGGCGGGGC GGGCATCTTGGGAGGGTCGGGCAGCGGGCCCACGGGTGGCTTTTTGTTTG GGTCGTCCGTCGCACCCGTTGCCAAGACGGCCGTGGCGTCTGCAACTTCT TCGGCTGGCAGCAGTGGCGGGAGGTTTTCCTTCGGAGATCCCTTGCCTGC CTCAGGGGCTACACCGTCACCCGCCGCTTCGTTGCAGCCTAGCGTGGGGA CTAACGCAGCGGGAGGCTTCACGTTTGGCGCGCCGGTGGCGGCCAAGTCG TCGGCCTCAGCCACCGACACAGCACCTTCTCCTGGCGTGGTGCCCGTCGA TACGGCCGAGGGCGAGCCCGCACTTGTGGCCGACGGCTCGGACGTCGACA GCGATCATGATAGTGAGGACGAGGAGGAGCGCAGGGAGGAGAAGGCCAAG GCCGAGAAAGCTTTCACGGAGGTCGACAGCGCCGCCAAGGGGTGGGTGGA AAAGAGCCAGTTCGAGGCCCTGATGGAGGCGGTGGGCACCACCTACGCCG TCGAGGACCACAAGCCGAAGCTGCTGGCGATCTGCACGGCCGGCCGGTTG GAAAAGCAGGCGTTCCTGACGTGGTACATGGACTGGCTGTTCGGCGAGGA GGAGTCATCGGACGACGAGTGGGGGGAAGGGGACGAGAGCAGCCCCAACG CCGTCGGACGTGCGCCGAAAGATGCCGGGTTTGCTGCTCTGGTGAAGAGT CAAGCAGGTGGTTGGAAGTGCGCCGCGTGCTTGGTGTCTAACGCCGAGGC GGCTGTGAAGTGCGCGTCGTGCGAGACCGTAAGGCCGGGGCGAGAGGGTA AGGTGGCGGCGTCTGGTGTGTTGGGTGGAGCAGGCATCTTGGGAGGGTCC AGCGGCGCGTCCGGCGGAGGCGGGGGTTTCGTGTTTGGGGCACCGGTTCC GGCTGCGGCTTCGGCGGCGCCAGCCGCGGCGACATCTTCATCGTCCACAG AGAACAGGGACGAACGAGAGGTCGTAGCCAAGGCGTCCTCTACGGGGGGC TCAGTGCCGGTCGAGCGGCCCCGCGGAAGGGGAAATGGGGGGAGGGAGAG TCCGTTCACTTTTGGATCCCCCACGAGGCATTTCACGTTCACCTCGCCGA CGCGATCTGGGGCGCCCGTATCAGGCGGAGCGGCGGCGGCGGCGATGGCG GCGGCGACCGCAGGCTTGACTAGCAAGGGAGCAGACCCTCCCGCGGGTGA GGGAGGTGCTGCCGGGGGCTTCACGTCCCCGACGCCGCGGGTTGTCGGTG GCGGTGGCTTCACGGCGTCAAGCCGAGACGGTGGCGGCGGTGGCGGCGGC GGTGGCGGCGGGGGCCACTTCTTCGGCCCGGGCAGCAGGGGCGAGGTGGA TGCGCAGGGTGAGGGTGTTGCGGACGCGGGAAGCAGCCCCCGGGCGGGAG GTTGTTTGTAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13987:242..4552-

>mRNA_Ecto-sp13_S_contig13987.3105.1 ID=mRNA_Ecto-sp13_S_contig13987.3105.1|Name=mRNA_Ecto-sp13_S_contig13987.3105.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=4230bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13987:242..4552- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGAGCAGGCCAAGGCGGAGGCGGCCTTCGACAAGGTGGATACCGCCGC
CAAGGGGTGGGTGGAAGAGAGCCAGTTCGAGGCCCTGATGGAGGCGGTCG
GCACCACGTACGCCGTGGAGGACCACAAGCCGAAGCTGCTGGCGATCTGC
ACGGATGGCCGGTTGGAGAGGCAGGCGTTCCTGACGTGGTACATGGACTG
GCTGTTCGGCGAGGAGGAGTCATCGGACGAGGAGGGAGAGGTTAAGTCGA
GCGTGGCCGCTGAGGGATCGAAGGACGCCGGGTTTGCTGCTCTGGTGAAG
AGCCGGGCGGGTGGGTGGAAGTGCGCCGCGTGCTTGGTGTCTAACGCCGA
GGCGGCTGTGAAGTGCGCGTCGTGCGAGACGGTGAGGCCGGGGCGAGAGG
GTAAGGTCGGGGCGTCTAGTGCGGTGGGTGGGGCAGGCATCTTGGGAGGG
TCGGGCGGCGGCCCCACGGGGGGCTTTACGTTCGGGACACCTGTCCCTCC
CGTTGCCAAGACGGCGACTGCGGGGCCCACTGCTCCGGTTGATAGCGGTA
CCGGGGGCTTCCCCTTCGGCGCATCTTCCGCCGTGGTAGGGGCTACATGT
TCATCCGCCGCTTCGTCGAAGCCTAGGGCGGGGACCACCGCAGCGGGAGG
CTTCACGTTTGGTGCGCCGCTGGTGACCGAATCGTCGGCCTTAGCGCCCG
CCGCAGGACCTTCCGCGGCTACTTTAGCAACAGCCAAGGTCGTAGTGGCC
GATGTCTCCGACGACGACGGTGCCAACGATAGCGATAGTGCAGACGAGGA
GGAGCGCCGGGAAGAGAGAGCCAAGGCGGAGGCGGCCTTCGACAAGGTGG
ACAACGCCGCCAAGGGGTGGGTGGAAGAAAGCCAGTTCGAGGCCCTGATG
GAGGCGGTCGGCACCACGTACGCCGTCGAGGACCACAAGCCGAAGCTGCT
CGCGATCTGCAAGGACGGCCGGTTGGAGAGGCAGGCATTCTTGGCGTGGT
ACATGGACTGGCTGTTCGGCGAGGAGGAGTCATCGGACGAGGAGGGAGAG
GTTAAATCGAGCGTGGCCGCTGAGAGATCGAAGGACGCCGGGTTTGCTGC
TCTGGTGAAGAGCCAGGCGGCTGGGTGGAAGTGCGCCGCGTGCTTGGTGT
CTAACGCCGAGGCGGCTGTGAAGTGCGCGTCGTGCGAGACGGTGAGGCCA
GGGCAAGAGGGTAAGGTCGGGGCGTCTTGTGTGGCAGGCGGGGGCATCTT
GGGAGGGTCGGGCGGCGGCCTCACGGGGGCCTTCACGTTCGGGTCGCCCG
TTGCTCCGGTTGACAAGACGGCCGCGGCGTCTTCAACTGCTCCGGCTGGC
AGCAGTGGCGGGAATTTTTCCTTTGGAGCTCCTTACCCCGCCCCAGGGGC
TACACCGTCACCCGCCGCTTCGCTGCAACCTAGCGCGGGGACTAACGCAG
CGGAAGGGTTCACGTTTGGCGCGCCGGTATCGGCGGCCTCAGCGGCTGAC
ACAGGAGCTGCTACCCCTGCGACAGTACTGGCCGATAAGGCCGAGGTGGC
GCCAAAGGTAGTGGGCAACAAATCCGACGATGATAGTGATGGTGGCATCG
ACAGCGATGGTTGGGACGAGGAGGAGCGTAAGGAAGAGCAGGCCAAGGCG
GAGGCGGCCTTCGACAAGGTGGATACCGCCGCCAAGGGGTGGGTGGAAGA
GAGCCAGTTCGAGGCCCTGATGGAGGCGGTCGGCACCACGTACGCCGTGG
AGGACCACAAGCCGAAGCTGCTGGCGATCTGCACGGATGGCCGGTTGGAG
AGGCAGGCGTTCCTGACGTGGTACATGGACTGGCTGTTCGGCGAGGAGGA
GTCATCGGACGAGGAGGGAGAGGTTAAGTCTAGCGTGGCCGCTGAGAGAT
CGAAGGACGCCGGGTTTGCTGCTCTGGTGAGGAGCCAGGCGGGTGGGTGG
AAGTGCGCCGCGTGCTTGGTGTCTAACGCCGAGGCGGCTGTGAAGTGCGC
GTCGTGCGAGACGGCAAAGCCAGGGGAAGAGCGTAATGTCGGGACCGGCA
TCTTGGGAGGTCCCGGCAGCGGGTCTGCGGGTGGTTTCACCTTCGGAACT
CCGTGCAATACCGCTGTGGCGGCGGCGGCCGAGGCGGGCAAGGTGTCTTT
CACTACCGCTGTGGCAACAAACGCCGCAGGAGGCTTTTCCTTCGGAGTTT
CGCCGCCCGCTCAAACCAGCGCAGTCCCCGCTGAGAAGCCGGAGAGCAAG
CCTGGTGCTGGCTCGGGGGACACTGGAGGTGATTTGGCCGGTGGCGGGGG
CTTGATAAGCCGTAGCTCGACCGGCGGCTTCACGTTCGGGTCGCTACCCA
GCGCAGCGGCGGATGAGCACGCGGTTGCTATCAGCTCTGGCTCGTCGGTT
GATGTCGGTGGCAGCGACAGTGATACAGGGAGCGACAGCGGGGACGAGGA
GGAGCGCAGGGAGGAGAAGGCCAAGGCCGAGAAGGCTTTTGCGGAGGTCG
ACAGCGCCGCCAAGGGGTGGGTGGAAGAGAGCCAGTTTGAGGCCCTAATG
GAGGCGGTCGGCACCACCTACGCCATCGAGGACCACAAGCCGAAGCTGCT
GGCGATCTGCACGGACGGCCGGTTGGAGAGGCAGTCGTTCTTGGCGTGGT
ACATGGACTGGCTGTTCGGCGAGGAGGAGTCATCGGACGAGGAAGGGCAG
GTAGAAAGCAGGGTGGTCGCTAAGGGGGAAGGGTCCAAAGACGCCGGGTT
TGCTTCTCTGGTGAGGCGCCAGGCGGGTGGGTGGAAGTGCCCCGCGTGCT
TGGTGTCTAACGCCGAGGCGGCTTTGAAGTGCGCGTCGTGCGAGGCGGCT
AAGCCAGGGGAAGGGGATCAAGTGGCGGCATCTAAGGTAGCAGGCGGGGC
GGGCATCTTGGGAGGGTCGGGCAGCGGGCCCACGGGTGGCTTTTTGTTTG
GGTCGTCCGTCGCACCCGTTGCCAAGACGGCCGTGGCGTCTGCAACTTCT
TCGGCTGGCAGCAGTGGCGGGAGGTTTTCCTTCGGAGATCCCTTGCCTGC
CTCAGGGGCTACACCGTCACCCGCCGCTTCGTTGCAGCCTAGCGTGGGGA
CTAACGCAGCGGGAGGCTTCACGTTTGGCGCGCCGGTGGCGGCCAAGTCG
TCGGCCTCAGCCACCGACACAGCACCTTCTCCTGGCGTGGTGCCCGTCGA
TACGGCCGAGGGCGAGCCCGCACTTGTGGCCGACGGCTCGGACGTCGACA
GCGATCATGATAGTGAGGACGAGGAGGAGCGCAGGGAGGAGAAGGCCAAG
GCCGAGAAAGCTTTCACGGAGGTCGACAGCGCCGCCAAGGGGTGGGTGGA
AAAGAGCCAGTTCGAGGCCCTGATGGAGGCGGTGGGCACCACCTACGCCG
TCGAGGACCACAAGCCGAAGCTGCTGGCGATCTGCACGGCCGGCCGGTTG
GAAAAGCAGGCGTTCCTGACGTGGTACATGGACTGGCTGTTCGGCGAGGA
GGAGTCATCGGACGACGAGTGGGGGGAAGGGGACGAGAGCAGCCCCAACG
CCGTCGGACGTGCGCCGAAAGATGCCGGGTTTGCTGCTCTGGTGAAGAGT
CAAGCAGGTGGTTGGAAGTGCGCCGCGTGCTTGGTGTCTAACGCCGAGGC
GGCTGTGAAGTGCGCGTCGTGCGAGACCGTAAGGCCGGGGCGAGAGGGTA
AGGTGGCGGCGTCTGGTGTGTTGGGTGGAGCAGGCATCTTGGGAGGGTCC
AGCGGCGCGTCCGGCGGAGGCGGGGGTTTCGTGTTTGGGGCACCGGTTCC
GGCTGCGGCTTCGGCGGCGCCAGCCGCGGCGACATCTTCATCGTCCACAG
AGAACAGGGACGAACGAGAGGTCGTAGCCAAGGCGTCCTCTACGGGGGGC
TCAGTGCCGGTCGAGCGGCCCCGCGGAAGGGGAAATGGGGGGAGGGAGAC
GGCGGCGGCGGCGATGGCGGCGGCGACCGCAGGCTTGACTAGCAAGGGAG
CAGACCCTCCCGCGGGTGAGGGAGGTGCTGCCGGGGGCTTCACGTCCCCG
ACGCCGCGGGTTGTCGGTGGCGGTGGCTTCACGGCGTCAAGCCGAGACGG
TGGCGGCGGTGGCGGCGGCGGTGGCGGCGGGGGCCACTTCTTCGGCCCGG
GCAGCAGGGGCGAGGTGGATGCGCAGGGTGAGGGTGTTGCGGACGCGGGA
AGCAGCCCCCGGGCGGGAGGTTGTTTGTAA
back to top