mRNA_Ecto-sp13_S_contig13980.3103.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13980.3103.1
Unique NamemRNA_Ecto-sp13_S_contig13980.3103.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13980.3103.1 vs. uniprot
Match: D7FIG3_ECTSI (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIG3_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 6.920e-6
Identity = 26/29 (89.66%), Postives = 29/29 (100.00%), Query Frame = 1 
Query:  187 KPSVVAGIDARLKATLPAGQQRSWVDIPR 273
            +PSVVAGIDAR+KATLPAG+QRSWVDIPR
Sbjct:   24 QPSVVAGIDARVKATLPAGRQRSWVDIPR 52
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13980.3103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIG3_ECTSI6.920e-689.66Endo/exonuclease/phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13980contigEcto-sp13_S_contig13980:145..2050 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size861
Hectar predicted targeting categorysignal peptide
Exons3
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.1321764-UTR-Ecto-sp13_S_contig13980:144..4501681462746.1321764-UTR-Ecto-sp13_S_contig13980:144..450Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13980 145..450 -
1681462746.1595118-UTR-Ecto-sp13_S_contig13980:1720..18011681462746.1595118-UTR-Ecto-sp13_S_contig13980:1720..1801Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13980 1721..1801 -
1681462746.1712503-UTR-Ecto-sp13_S_contig13980:1993..20501681462746.1712503-UTR-Ecto-sp13_S_contig13980:1993..2050Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig13980 1994..2050 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462746.142753-CDS-Ecto-sp13_S_contig13980:450..7301681462746.142753-CDS-Ecto-sp13_S_contig13980:450..730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13980 451..730 -
1681462746.1510034-CDS-Ecto-sp13_S_contig13980:1583..17201681462746.1510034-CDS-Ecto-sp13_S_contig13980:1583..1720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13980 1584..1720 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13980.3103.1prot_Ecto-sp13_S_contig13980.3103.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13980 451..1720 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13980.3103.1

>prot_Ecto-sp13_S_contig13980.3103.1 ID=prot_Ecto-sp13_S_contig13980.3103.1|Name=mRNA_Ecto-sp13_S_contig13980.3103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MLLLRALLFVPSVLGIKPSVVAGIDARLKATLPAGQQRSWVDIPRSCSPS
LEGAPPSQVPRFPLTRQRLLGCSQLLQCKVETQGEEVGKQDDRGSAQKRR
PQGSLSTTTTSLWADVVVGCPFPEDLVAYSGRVVGTLF*
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mRNA from alignment at Ecto-sp13_S_contig13980:145..2050-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13980.3103.1 ID=mRNA_Ecto-sp13_S_contig13980.3103.1|Name=mRNA_Ecto-sp13_S_contig13980.3103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1906bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13980:145..2050- (Ectocarpus species13 EcNAP12_S_4_19m)
GCACCAGCTGCCAGGTTTCGCGGGTCAACCTTGTACATACCCACAGAAGG
AATATAGGTGGGGTAAACAAAAGTACGTGGAACTCGATACACTATGATAT
TTTCAGATCTCGAAACAACATGAACGACGTAACTTAGATGTGCTGCGTAT
GCAAAATTTTAGTGTACATGATTTAAAGAGAGTGCTTTGGGGGCCCCGCC
AATTCTCAGTCTCTTGTGCATTACGATGTCGACGATCGCCACAACAAAGG
CCAACCACCCCCCACGGCGCGTCGGCCTACTGTGGTGCGTGGCAAGGCTT
AGGATTTCACCCCCGAAAACCTAGTTATCGATGCTGCTGCTTCGCGCGCT
GCTTTTTGTCCCGTCAGTTCTCGGGATAAAGCCGAGCGTTGTCGCCGGCA
TCGACGCCCGACTGAAGGCAACGCTGCCTGCAGGGCAGCAACGAAGTTGG
GTGGATATTCCCAGGAGGTGCGCATGTTTTGCACATTTGGCGGCGTGCGG
ACATATCATTGGTAATCTCCATTGCATGGTGTGATGTGTGGAGCCAGTAT
ATATCGTGTTGATGTGCATGGGTCGACATCTCCTCGGCCCTCAAGAGATC
AGCCCGATGAAACATGTACTACAGCGCAACAGTATATATGGTGGACGACC
GTTGGTCACATCTCCCCAAATCGCCGTCGAGGATGAATAACGTTGCGTCT
CCGTCCGTGGCGAGATGTCTGATTAGGTGCACAACACCCGGATTCAAATT
CCGCTACCCACTTTGACCAACACAATAGCAAAGGTCTGCGTGTAAGGACA
GATTTTTCGACCTTGTGGAGTTGCAAGTTGATAAGTCTATGGGTTGCAGT
GAACATGTAGACGCACGCATTCGTAGCGCACCACGTGATACACATACAAC
ATATATGCAGTGTAAAGTGAGCTCACCTCCAGCCAGTCGAGTTCTGGATA
CCCAAAGAGTTTGCTTTCTTCTGGAGGCGACCGTTGTCGCTTCTCTCCAA
AGGCCAAGTAGGACGATTCCCTCTGCCGCGCTGATGTCGACGAAGAGATT
CCTGTTTTTGGTGGTAGAAAGACCCGTGTTCAAAATCGTGCCACCCATCT
TATTTCAAGGTGTGTGGCGGGGGGGGGGGGGATTGGTTGAAAGAGAGGAA
TTGGAGTGCTGCCCAGCCCCCGCAGCTCTCATGCCGTGAGCAATCAGGTC
TGCGGGCCTAGAGAAAGAACCCACGACGTCGTTGTCATCGACCTCCTCGA
GGCTGTCTCTGTTTGCGGCGGCGCGATCGTCCTGCTTTCCTACTTCGTTC
CCCTCCCCCTCCTCTGGCAGCTGTTCACCATCTCTGGAGGGTGCTCCCCC
CTCCCAGGTTCCGCGTTTCCCTTTGACGCGGCAACGGCTCCTCGGCTGTA
GCCAGTTGCTACAGTGCAAGGTCGAAACACAGGGGGAGGAGGTAGGAAAA
CAGGACGATCGGGGGAGCGCACAAAAGAGGCGACCTCAGGGAAGTCTGTC
GACAACGACGACGTCGTTGTGGGCCGACGTCGTTGTGGGTTGCCCCTTTC
CCGAAGACCTGGTCGCTTACAGCGGGAGAGTCGTGGGCACCCTCTTTTGA
GAATGGCTTTGATATCAGAATGCCATCATTTCTCCACAAGAGGGTCTTCT
TCTTTGACTGATTCCCTTGGGACCCCGGCGTTTATGTATATGTAGTACTG
TACCGAAACGATTCCTGTACTTGAATCGTTATGAAGGCGACCAGCAAGAT
TCCTGACGTTCGAGGTGCGCGCTGAGACCAGTGCTTGTTGCAGTTTGCGC
AGCAAAAACCCGGTGCTCGGAATTGTTGTTACGACCCTACAAGTGTAGCG
GGTCAAGGGTCAAGGGTCGCGGTGCAAGCGAGGTCTGTGGTGGCAACATT
GTTCTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13980:145..2050-

>mRNA_Ecto-sp13_S_contig13980.3103.1 ID=mRNA_Ecto-sp13_S_contig13980.3103.1|Name=mRNA_Ecto-sp13_S_contig13980.3103.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13980:145..2050- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTGCTTCGCGCGCTGCTTTTTGTCCCGTCAGTTCTCGGGATAAA
GCCGAGCGTTGTCGCCGGCATCGACGCCCGACTGAAGGCAACGCTGCCTG
CAGGGCAGCAACGAAGTTGGGTGGATATTCCCAGGAGCTGTTCACCATCT
CTGGAGGGTGCTCCCCCCTCCCAGGTTCCGCGTTTCCCTTTGACGCGGCA
ACGGCTCCTCGGCTGTAGCCAGTTGCTACAGTGCAAGGTCGAAACACAGG
GGGAGGAGGTAGGAAAACAGGACGATCGGGGGAGCGCACAAAAGAGGCGA
CCTCAGGGAAGTCTGTCGACAACGACGACGTCGTTGTGGGCCGACGTCGT
TGTGGGTTGCCCCTTTCCCGAAGACCTGGTCGCTTACAGCGGGAGAGTCG
TGGGCACCCTCTTTTGA
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