prot_Ecto-sp13_S_contig1398.3102.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig1398.3102.1
Unique Name	prot_Ecto-sp13_S_contig1398.3102.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	505

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1398.3102.1 vs. uniprot
Match: D8LDG0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG0_ECTSI)

HSP 1 Score: 752 bits (1942), Expect = 2.880e-254
Identity = 373/424 (87.97%), Postives = 385/424 (90.80%), Query Frame = 0

Query:    1 VYVCPDPDGVTAEAASSLSNNTPAAGASSGXXXXXAPPGSTPAAGEAGAGRGHGAVVLKTKPILHARLKHAELMCLDWSPQEPDLLLAGASDGTVCIWKVSALGGEHGGEGTAGNHPPFRLFSCSAIGMCDVVQAVVHDVAWCPTSPNLFATTGAGHILTVWDMSDVFEPLCSIPVKTQRCSGTSVRWGPGGSGIWVSASTRPFMFFLDFFEGGGAGNLPAVVQEGRGVRDVVPLEDATYGLDVMRKPGQPDHGQSIHLAAWTAPSGQIRVSAARCREVAPSQHHHLAAAFLEQCRKSKKSQRLQLLEHRVMHRLEYVRPGDRLVDQGDPWCRAKGDRVNEAAAEARASWMLGAVGAGGRAGPPSMGGGTPADPYLRVFTGAESEGLLAIKWHEAMPPLSGLLD--------TTPGECPLRQGG 416
            VYVCPDPDGVTAEAASSLSN  P +GAS G     APPGSTPAA        HGAVVLKTKPIL ARLKHAELMCLDWSPQEPDLLLAGASDGTVCIWKVSALGGEHGGEGT GNHPPFR FSCSAIGMCDVVQAVV+DVAWCPTSPNLFATTGAGHILTVWD SDVFEPLCSIPVKTQRCSGT+VRWGPGGSGIWVSASTRPF+FFLDFFEGGGAGN+PAVVQEGRGVRDVVPLEDATYGLDVMRKPGQPDHGQSIHLAAWTAPSGQ+RVSAARCREVAP QHHHLAAAFLEQCRKSKKSQRLQLLEHRVMHRLEYVRPGDRLVDQGDPWC A+GDRVN+AAA AR +WMLGAVGAG RAGPPSMGGGT ADPYLRVFTGAESEGLLAIKWHEAMPPLSGLL+        ++PG C L  GG
Sbjct: 1144 VYVCPDPDGVTAEAASSLSNTAPGSGASGGTAGAFAPPGSTPAAXXXXXXXXHGAVVLKTKPILQARLKHAELMCLDWSPQEPDLLLAGASDGTVCIWKVSALGGEHGGEGTTGNHPPFRQFSCSAIGMCDVVQAVVNDVAWCPTSPNLFATTGAGHILTVWDTSDVFEPLCSIPVKTQRCSGTTVRWGPGGSGIWVSASTRPFIFFLDFFEGGGAGNVPAVVQEGRGVRDVVPLEDATYGLDVMRKPGQPDHGQSIHLAAWTAPSGQVRVSAARCREVAPLQHHHLAAAFLEQCRKSKKSQRLQLLEHRVMHRLEYVRPGDRLVDQGDPWCTAEGDRVNDAAAAARTTWMLGAVGAGARAGPPSMGGGTAADPYLRVFTGAESEGLLAIKWHEAMPPLSGLLEKAPSSKAVSSPGACVLVSGG 1567

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BLAST of mRNA_Ecto-sp13_S_contig1398.3102.1 vs. uniprot
Match: A0A6H5JCY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCY4_9PHAE)

HSP 1 Score: 613 bits (1580), Expect = 3.520e-204
Identity = 328/444 (73.87%), Postives = 338/444 (76.13%), Query Frame = 0

Query:    1 VYVCPDPDGVTAEAASSLSNNTPAAGASSGXXXXXAPPGSTPAAGEAGAGRGHGAVVLKTKPILHARLKHAELMCLDWSPQEPDLLLAGASD----------------GTVCIWKVSALGGEHGGEGTAGNHPPFRLFSCSAIGMCDVVQAVVHDVAWCPTSPNLFATTGAGHILTVWDMSDVFEPLCSIPVKTQRCSGTSVRWGPGGSG---------------IWVSASTRPFMF-------FLDFFEGGGAGNLPAVVQEGRGVRDVVPLEDATYGLDVMRKPGQPDHGQSIHLAAWTAPSGQIRVSAARCREVAPSQHHHLAAAFLEQCRKSKKSQRLQLLEHRVMHRLEYVRPGDRLVDQGDPWCRAKGDRVNEAAAEARASWMLGAVGAGGRAGPPSMGGGTPADPYLRVFTGAESEGLLAIKWHEAMPPLSGLLDTT 406
            VYVCPDPDGVTAEAASSLSN TP A A         P               HGAVVLKTKPILHARLKHAE+MCLDWSPQEPDLLLAGASD                GTVCIWKVSALGGEHGGEGT GNHPP R F+CSAIGMCDVVQAVVHDVAWCPTSPNLFATTGAGHILTVWD SDVFEPLCSIPVKTQRCSGTSVRWGPGG                 ++ S + R  ++       F      GGA NLPAVVQEGRG+RDVVPLEDATYGLDVMRKPGQPDHGQSIHLAAWTAPSGQIRVSAARCREVAP QHHHLAAAF  QCR SKKSQRLQLLEHRVMHR+E           GDPWC AK DR NEAAA+AR SWMLGAVGAG RAGPPSMGGGT ADPYLRVFTGAESEGLLAIKWHEAMPPLSGLL  T
Sbjct:  752 VYVCPDPDGVTAEAASSLSNTTPGASA---------PXXXXXXXXXXXXXXXHGAVVLKTKPILHARLKHAEVMCLDWSPQEPDLLLAGASDDTTXXXXXXXXXXXAKGTVCIWKVSALGGEHGGEGTTGNHPPMRQFACSAIGMCDVVQAVVHDVAWCPTSPNLFATTGAGHILTVWDTSDVFEPLCSIPVKTQRCSGTSVRWGPGGMMRNRLPTPISCWSLCFLFSSGALREVLYRDHATQSFSAKGPRGGAENLPAVVQEGRGIRDVVPLEDATYGLDVMRKPGQPDHGQSIHLAAWTAPSGQIRVSAARCREVAPWQHHHLAAAFPGQCRGSKKSQRLQLLEHRVMHRVE-----------GDPWCTAKVDRFNEAAAQARTSWMLGAVGAGARAGPPSMGGGTAADPYLRVFTGAESEGLLAIKWHEAMPPLSGLLHCT 1175

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1398.3102.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1398.3102.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LDG0_ECTSI	2.880e-254	87.97	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5JCY4_9PHAE	3.520e-204	73.87	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 61..99 e-value: 6.8E-4 score: 28.9 coord: 123..163 e-value: 0.11 score: 21.6
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 25..213 e-value: 8.1E-18 score: 66.6
None	No IPR available	PANTHER	PTHR15052	RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR COMPLEX SUBUNIT	coord: 53..200
None	No IPR available	PANTHER	PTHR15052:SF2	GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 2	coord: 53..200
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 72..209

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1398	contig	Ecto-sp13_S_contig1398:10576..17267 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1398.3102.1	mRNA_Ecto-sp13_S_contig1398.3102.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig1398 10576..17267 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig1398.3102.1 ID=prot_Ecto-sp13_S_contig1398.3102.1|Name=mRNA_Ecto-sp13_S_contig1398.3102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=505bp
VYVCPDPDGVTAEAASSLSNNTPAAGASSGSSAACAPPGSTPAAGEAGAG
RGHGAVVLKTKPILHARLKHAELMCLDWSPQEPDLLLAGASDGTVCIWKV
SALGGEHGGEGTAGNHPPFRLFSCSAIGMCDVVQAVVHDVAWCPTSPNLF
ATTGAGHILTVWDMSDVFEPLCSIPVKTQRCSGTSVRWGPGGSGIWVSAS
TRPFMFFLDFFEGGGAGNLPAVVQEGRGVRDVVPLEDATYGLDVMRKPGQ
PDHGQSIHLAAWTAPSGQIRVSAARCREVAPSQHHHLAAAFLEQCRKSKK
SQRLQLLEHRVMHRLEYVRPGDRLVDQGDPWCRAKGDRVNEAAAEARASW
MLGAVGAGGRAGPPSMGGGTPADPYLRVFTGAESEGLLAIKWHEAMPPLS
GLLDTTPGECPLRQGGFQPRSLRPRFRGARRAGAGLGGTPPPDRACQQWQ
EGPEEEEGSERQGQEEEEEPRPRRHGCESRSQVGEDGAGSKRWGSSGERE
RGRQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001680	WD40_repeat
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR036322	WD40_repeat_dom_sf