mRNA_Ecto-sp13_S_contig1398.3101.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1398.3101.1
Unique NamemRNA_Ecto-sp13_S_contig1398.3101.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: D8LDG1_ECTSI (Dihydrodipicolinate reductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG1_ECTSI)

HSP 1 Score: 632 bits (1629), Expect = 2.540e-217
Identity = 323/333 (97.00%), Postives = 325/333 (97.60%), Query Frame = 1 
Query:  172 MMATGGGSFFDGIAEFFEDLQKGMAMPPSAASVAMAKKEKEEQEEMAFEGVWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGKVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDFDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            MMATGGGSFFDGIAEFFEDLQKGMAMPPSAASVA AK      EEMAFEGVWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSG+VSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSF DYKLEITESHQSAKVDTSGTAKALAADFAKLTAED+DVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM
Sbjct:    1 MMATGGGSFFDGIAEFFEDLQKGMAMPPSAASVAKAKXXXXXXEEMAFEGVWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGEVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFGDYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDYDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 333
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A835ZG43_9STRA (Dihydrodipicolinate reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG43_9STRA)

HSP 1 Score: 352 bits (904), Expect = 3.790e-110
Identity = 189/283 (66.78%), Postives = 220/283 (77.74%), Query Frame = 1 
Query:  331 MMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSG--SGKVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDFDVKS-INKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            MMNGL G MG +VAAACLRKGF++APY+++G      +V+V D  GG+  TV L+  D AEG D+ + E+K R  G  ++ +DYT P+AVN+NAE YA+ GL FVMGTTGGDR  LM  T  SGVYAVIAPNMGKQIVALQ+AID MAREFPG+F  Y L+ITESHQS+K DTSGTAKALA DFA LT   FDV+S I  +RD  GQ AFGVPEE+L GHAFH YSL+S DGTVEFQFRHNVCGR MYAEGTADAVEFLA +  S A KRVYNM+DVL+ GG+
Sbjct:    1 MMNGLPGNMGKEVAAACLRKGFKMAPYSLTGPQIQDTEVTVDDMSGGESFTVGLL-KDGAEGTDEKILEMKARF-GSDLICIDYTHPTAVNSNAELYARLGLPFVMGTTGGDRSKLMEDTVKSGVYAVIAPNMGKQIVALQTAIDYMAREFPGAFGGYSLDITESHQSSKADTSGTAKALANDFAVLTGAPFDVESEITMIRDAPGQKAFGVPEEYLGGHAFHMYSLRSGDGTVEFQFRHNVCGRRMYAEGTADAVEFLARQMASNAQKRVYNMIDVLKMGGI 281
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A7S3XN34_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XN34_HETAK)

HSP 1 Score: 316 bits (810), Expect = 2.110e-96
Identity = 164/285 (57.54%), Postives = 207/285 (72.63%), Query Frame = 1 
Query:  334 MNGLSGKMGLDVAAACLRKGFRIAPYAMSGSG--SGKVSVADPKGGDPTTVTLV--PSDDAE--GCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDFDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            MNGL G MG +VA AC+R+GF+IAPYA +G       + + D +GG+   V L+  P+D+ +   CD  +  LK  C G  ++ +DYT P+AVN NA FYAKH LNFVMGTTGGDR AL +VTEG G YA++APNM K IVALQ+ +D+MAR +PG+F  YKL I ESHQS K DTSGTAKA+A   A L    FD++ IN +RD EGQ AFGVPEE+L GHA+HTY+L S DGT EFQFRHNV GR +YAEGTADAV+FLA +  +  DK+V++M+DVL+ G +
Sbjct:    1 MNGLPGAMGREVAGACIRRGFKIAPYAFTGPDVTEALIDIDDLEGGEKIGVKLIRGPTDEKKEYACDGIIDGLKAAC-GDYLIAIDYTHPTAVNCNANFYAKHQLNFVMGTTGGDRAALQAVTEGGGHYAIVAPNMAKGIVALQAGLDDMARAYPGAFNGYKLTIDESHQSTKADTSGTAKAIAGSLATLNGAPFDLEDINMIRDAEGQRAFGVPEEYLKGHAYHTYALVSPDGTTEFQFRHNVNGRRVYAEGTADAVQFLAEQIKAKNDKKVFSMIDVLKAGAL 284
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A813FPG7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FPG7_POLGL)

HSP 1 Score: 304 bits (778), Expect = 8.100e-92
Identity = 155/284 (54.58%), Postives = 200/284 (70.42%), Query Frame = 1 
Query:  319 GVWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGKVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDFDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            G+ VMMNGL G MG +V+ AC+R+G  +AP A++G G         +G    TV LV  D A    KA+ ELK+   G  +V++D+T P+AVN N + Y   G+ +VMGTTGGDR+ALM  T  SGVYAVIAPNMGKQIVALQ+ ++ MAR+FPG+F+ YKLE+TESHQ  K DTSGTAKAL + F K+  + F++  I  +RD E Q AFGV EEHL GHA+HTY+LKS DG+VEFQF+HNV GR  Y+EG ADAV+F+A K    + KR ++M+D+L  G M
Sbjct:    3 GIVVMMNGLPGAMGHEVSQACIRRGLTLAPVALTGGGQ-PADCQVTEGSTSVTVKLVGPDAAGSQRKALEELKK-AHGNRLVIIDFTHPTAVNPNGDLYTSVGVTYVMGTTGGDREALMKATNDSGVYAVIAPNMGKQIVALQATMERMARDFPGAFSGYKLEVTESHQKTKADTSGTAKALVSSFQKMGVDKFEMDDIKMLRDDESQKAFGVSEEHLNGHAWHTYTLKSGDGSVEFQFKHNVSGRRTYSEGVADAVQFIAAKCAEKSKKRTFDMIDILEAGVM 284
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A812LTM1_SYMPI (DAPB1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812LTM1_SYMPI)

HSP 1 Score: 299 bits (766), Expect = 6.200e-90
Identity = 160/280 (57.14%), Postives = 199/280 (71.07%), Query Frame = 1 
Query:  319 GVWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGS-GKVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDFDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVL 1155
            GV V ++GL G MG +V+ AC+R+G  +AP  ++G G  G+  V +  G  P  V LV SD      +A+ ELK    G  +V++D+T PSAVNANAE YA  G+NFV GTTGGDRDALM  TE SGVYAVIAPNMGKQIVALQ+ ++ MAR+FPG+FA YKLE+TESHQ  K DTSGTAK +   F  L  + F  + I K+RD   Q AFGVPEE   GHAFHTY+L S+DG+V+FQF+HNVCGR  Y EG ADAV+F+A KA   + K+VYNM+D+L
Sbjct:    3 GVVVCVSGLPGAMGHEVSQACIRRGMTLAPVGLTGPGMPGQCEVVE-AGSYP--VKLVGSDQPAAQKQALEELKA-AHGDKLVIIDFTHPSAVNANAELYAAAGVNFVFGTTGGDRDALMKSTEQSGVYAVIAPNMGKQIVALQATMERMARDFPGAFAGYKLEVTESHQKTKADTSGTAKDIVKSFQGLGVDAFSHEQITKLRDDASQRAFGVPEEFANGHAFHTYTLTSSDGSVQFQFKHNVCGRRTYGEGVADAVQFIASKAMEKSSKKVYNMIDIL 278
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A7R9W9Z2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W9Z2_9STRA)

HSP 1 Score: 298 bits (763), Expect = 5.800e-89
Identity = 155/285 (54.39%), Postives = 198/285 (69.47%), Query Frame = 1 
Query:  322 VWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGK--VSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDFDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            V VM+NG+ G M  + A ACLRKG  +AP AM+G       ++VAD   G    V L+P++  E  + AV  LK  C   +++ +D+T PSAVN NA FYAK G+ FVMGTTGGDRD L+   E +   AVIAPNM KQIVALQ+ ++++A +FPG+FA YK+ + ESHQ  K DTSGTAKA+ A    L+ +DF+VK I K+RD E  +AFGVPEE L GHAFHTY+  S DG+VEFQ +HNV GR +YAEGTAD V+FLAGK   G + +VYNM+DVL+ G M
Sbjct:   49 VRVMVNGMPGPMATEAAEACLRKGLDLAPVAMTGPEITPCTITVADSVTGKSANVRLIPANQDEEINSAVEGLKEACGPDNLLAIDFTHPSAVNGNARFYAKMGIPFVMGTTGGDRDQLIKDMEEAKHSAVIAPNMAKQIVALQAGLEDLAMKFPGAFAGYKINVRESHQKTKADTSGTAKAVVASLKNLSDDDFEVKDIEKIRDNEESMAFGVPEEGLNGHAFHTYTFTSPDGSVEFQLKHNVVGRTVYAEGTADGVKFLAGKLRKGGEGKVYNMIDVLQAGVM 333
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A7S3C098_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3C098_9EUKA)

HSP 1 Score: 295 bits (754), Expect = 4.100e-88
Identity = 164/293 (55.97%), Postives = 202/293 (68.94%), Query Frame = 1 
Query:  328 VMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSG--SGKVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAED-FDVKSINKVRDTEGQLAFGVP---------EEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            +M+NGL G MG ++AAACLR+G  +AP+ M+G      +V+V D  GG PTTV L  S + E     V+      + G+VV +D+T PSAVNANAE+YA H L FVMGTTGGDR+ALM+  E +G++ VIAPNM KQIVALQ+A+++MA EFPGSF  Y L + ESHQS K DTSGTAKA++A  AKL  ++ F   SI KVR  E QLA G P         E  L GHAFHTYSL S DG VEFQFRHNV GR  YAEGT DA  FLA KA + +++RV++M+DVLR G M
Sbjct:   13 LMINGLPGAMGKEIAAACLRRGIELAPFGMTGDAITDTEVTVDDGHGGTPTTVALFRSSEREALAAKVSSSYP--TPGAVVCIDFTHPSAVNANAEWYAAHKLPFVMGTTGGDREALMTCVEDAGLHCVIAPNMAKQIVALQAALEHMAGEFPGSFEGYALRVVESHQSTKADTSGTAKAISASLAKLNGDETFGTDSIEKVRLPEDQLAGGGPSHTGVSPVAEHALGGHAFHTYSLVSGDGNVEFQFRHNVQGRATYAEGTVDAAVFLASKAATASEQRVFSMIDVLRAGAM 303
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A812JJH1_9DINO (DAPB2 protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812JJH1_9DINO)

HSP 1 Score: 290 bits (743), Expect = 5.150e-87
Identity = 155/273 (56.78%), Postives = 192/273 (70.33%), Query Frame = 1 
Query:  355 MGLDVAAACLRKGFRIAPYAMSGSGS-GKVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDFDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            MG +V+ ACLR+G  +AP  ++G G   +  V +   G   TV LV SD      +A+  LK    G  +V++D+T PSAVN NAE Y   G+NFV GTTGGDRDALM VTE SGVYAVIAPNMGKQIVALQ+ ++ MA++FPG+FA YKLE+TESHQ  K DTSGTAKA+ + F  L  + FD + I K+RD   Q AFGVPEE   GHAFHTY+L S DG+V+FQF+HNVCGR  Y EG ADAV+F+A KA   + K+VYNM+D+L  G M
Sbjct:    1 MGHEVSQACLRRGMTLAPVGLTGPGMPDQCQVVE---GGTHTVKLVGSDQLTAQKEALEGLKA-AHGDRLVIIDFTHPSAVNRNAELYNAAGVNFVFGTTGGDRDALMKVTEQSGVYAVIAPNMGKQIVALQATMERMAKDFPGAFAGYKLEVTESHQKTKADTSGTAKAMVSSFQGLGVDAFDHEQIAKLRDDASQKAFGVPEEFSNGHAFHTYTLTSGDGSVQFQFKHNVCGRRTYGEGVADAVQFIAHKAMEKSPKKVYNMIDILEAGQM 269
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A2R5GJY4_9STRA (4-hydroxy-tetrahydrodipicolinate reductase 1, chloroplastic n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJY4_9STRA)

HSP 1 Score: 288 bits (736), Expect = 1.180e-85
Identity = 156/285 (54.74%), Postives = 194/285 (68.07%), Query Frame = 1 
Query:  322 VWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGKVSVADPKGGDPTTVTLV-PSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAED-FDVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            V  ++NGL G MG ++A ACLR+G  +A  A++G+   K    +   G   TV LV P  +AE   K   E K R  G  VV +D+T PSAVN NAE Y K GL FVMGTTGGDR+AL  V   +G++A+IAPNM KQIVA Q+ +D MA  +PG+F  Y LEITESHQS K DTSGTAKA+     KL   D FDV+ I K+R++E Q AFGVP E L GHA+HTY+LKS DG+V F+F+HNVCGR  YAEG  DAV FLA +   GADK++Y+M+DVL+ G M
Sbjct:   11 VVAVVNGLPGNMGKEIAQACLRRGLEVADVALTGANMPKDVTVEKDDGGSVTVNLVGPGSEAETQLKEALE-KGRSEGKIVVAIDFTHPSAVNRNAELYVKLGLPFVMGTTGGDREALQKVVADNGLFALIAPNMCKQIVAFQAMMDTMASTYPGAFGGYGLEITESHQSGKADTSGTAKAMVEYLNKLKGGDPFDVEDIKKLRESEAQQAFGVPAEALEGHAWHTYTLKSGDGSVVFEFKHNVCGRRTYAEGVVDAVNFLAARINEGADKKLYDMIDVLKAGEM 294
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Match: A0A0M0K3J7_9EUKA (Dihydrodipicolinate reductase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0K3J7_9EUKA)

HSP 1 Score: 285 bits (730), Expect = 9.690e-85
Identity = 167/302 (55.30%), Postives = 204/302 (67.55%), Query Frame = 1 
Query:  301 EEMAFEGVWVMMNGLSGKMGLDVAAACLRK-GFRIAPYAMSGSGSGKVSVADPKGGDPTTVTLVPSDDAEGCDKAVAELKRRC-SGGSVVVVDYTTPSAVNANAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQSAIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAE-DFDVKSINKVRDTEGQLAFG---------VPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVCGRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM 1170
            +E A   V VMMNGL G MG ++AA CL++ G  +AP+A+   G G+V V D  GG   TV L  +   E  D+    +K      GS+V +D+T PSAVN NAE+YA H L FVMGTTGGDR+ALM  T  SG YAVIAPNM KQIVALQ+A++ MAR+FPGSF  Y L + ESHQ++K DTSGTAKA++A  A+L+ E DF  + I +VR+   QLA G         VPE  L+GHAFHTYSL S D  VEFQFRHNV GR  YAEGT DAV FLA +  + A+KRVY+M+DVLR G M
Sbjct:    2 DESAAGSVAVMMNGLRGAMGREIAAVCLKRPGVTLAPFALEKEG-GEVVVDDGCGGPAVTVRLYGT---EARDELAERVKAEYPQSGSLVCIDFTHPSAVNGNAEWYAAHKLPFVMGTTGGDREALMKCTRASGTYAVIAPNMAKQIVALQAALEQMARDFPGSFDGYSLSVVESHQTSKADTSGTAKAISASLARLSGESDFTPERIVRVREPAEQLAGGGPSHTGVSPVPEAALSGHAFHTYSLVSGDKAVEFQFRHNVLGRSTYAEGTVDAVVFLARQMVAKAEKRVYDMVDVLRAGAM 299
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1398.3101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDG1_ECTSI2.540e-21797.00Dihydrodipicolinate reductase n=1 Tax=Ectocarpus s... [more]
A0A835ZG43_9STRA3.790e-11066.78Dihydrodipicolinate reductase n=1 Tax=Tribonema mi... [more]
A0A7S3XN34_HETAK2.110e-9657.54Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813FPG7_POLGL8.100e-9254.58Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812LTM1_SYMPI6.200e-9057.14DAPB1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]
A0A7R9W9Z2_9STRA5.800e-8954.39Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3C098_9EUKA4.100e-8855.97Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A812JJH1_9DINO5.150e-8756.78DAPB2 protein n=2 Tax=Symbiodinium TaxID=2949 RepI... [more]
A0A2R5GJY4_9STRA1.180e-8554.744-hydroxy-tetrahydrodipicolinate reductase 1, chlo... [more]
A0A0M0K3J7_9EUKA9.690e-8555.30Dihydrodipicolinate reductase n=1 Tax=Chrysochromu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1398contigEcto-sp13_S_contig1398:2..8875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score636.0
Seed ortholog evalue1.2e-179
Seed eggNOG ortholog2880.D8LDG1
Model size3152
KEGG rclassRC00478
KEGG koko:K00215
KEGG ReactionR04198,R04199
KEGG Pathwayko00261,ko00300,ko01100,ko01110,ko01120,ko01130,ko01230,map00261,map00300,map01100,map01110,map01120,map01130,map01230
KEGG ModuleM00016,M00525,M00526,M00527
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0008839,GO:0009058,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016491,GO:0016627,GO:0016628,GO:0019752,GO:0019877,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043648,GO:0043650,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046451,GO:0055114,GO:0071704,GO:1901564,GO:1901566,GO:1901576
Exons9
EggNOG free text desc.4-hydroxy-tetrahydrodipicolinate reductase
EggNOG OGs28HEW@1,2QPSY@2759
Ec32 ortholog descriptiondihydrodipicolinate reductase
Ec32 orthologEc-15_000750.1
EC1.17.1.8
Cds size1173
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1398.3101.1prot_Ecto-sp13_S_contig1398.3101.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1398 1981..8875 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.9275072-UTR-Ecto-sp13_S_contig1398:1..19801681462745.9275072-UTR-Ecto-sp13_S_contig1398:1..1980Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1398 2..1980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.938064-CDS-Ecto-sp13_S_contig1398:1980..21341681462745.938064-CDS-Ecto-sp13_S_contig1398:1980..2134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 1981..2134 -
1681462745.9460263-CDS-Ecto-sp13_S_contig1398:2413..25111681462745.9460263-CDS-Ecto-sp13_S_contig1398:2413..2511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 2414..2511 -
1681462745.9537911-CDS-Ecto-sp13_S_contig1398:2995..31091681462745.9537911-CDS-Ecto-sp13_S_contig1398:2995..3109Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 2996..3109 -
1681462745.9619536-CDS-Ecto-sp13_S_contig1398:3549..36091681462745.9619536-CDS-Ecto-sp13_S_contig1398:3549..3609Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 3550..3609 -
1681462745.9699216-CDS-Ecto-sp13_S_contig1398:4118..42031681462745.9699216-CDS-Ecto-sp13_S_contig1398:4118..4203Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 4119..4203 -
1681462745.9779623-CDS-Ecto-sp13_S_contig1398:4942..51451681462745.9779623-CDS-Ecto-sp13_S_contig1398:4942..5145Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 4943..5145 -
1681462745.9859636-CDS-Ecto-sp13_S_contig1398:6141..63151681462745.9859636-CDS-Ecto-sp13_S_contig1398:6141..6315Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 6142..6315 -
1681462745.9969375-CDS-Ecto-sp13_S_contig1398:7228..74211681462745.9969375-CDS-Ecto-sp13_S_contig1398:7228..7421Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 7229..7421 -
1681462746.0050392-CDS-Ecto-sp13_S_contig1398:8783..88751681462746.0050392-CDS-Ecto-sp13_S_contig1398:8783..8875Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1398 8784..8875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1398.3101.1

>prot_Ecto-sp13_S_contig1398.3101.1 ID=prot_Ecto-sp13_S_contig1398.3101.1|Name=mRNA_Ecto-sp13_S_contig1398.3101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=391bp
MRSPGLTLSMCVALVSPSTGFFAGGPTLLTSATSGDGKTRRSRSPVATRS
PGSPPSVMMATGGGSFFDGIAEFFEDLQKGMAMPPSAASVAMAKKEKEEQ
EEMAFEGVWVMMNGLSGKMGLDVAAACLRKGFRIAPYAMSGSGSGKVSVA
DPKGGDPTTVTLVPSDDAEGCDKAVAELKRRCSGGSVVVVDYTTPSAVNA
NAEFYAKHGLNFVMGTTGGDRDALMSVTEGSGVYAVIAPNMGKQIVALQS
AIDNMAREFPGSFADYKLEITESHQSAKVDTSGTAKALAADFAKLTAEDF
DVKSINKVRDTEGQLAFGVPEEHLAGHAFHTYSLKSNDGTVEFQFRHNVC
GRLMYAEGTADAVEFLAGKAGSGADKRVYNMLDVLREGGM*
back to top

mRNA from alignment at Ecto-sp13_S_contig1398:2..8875-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1398.3101.1 ID=mRNA_Ecto-sp13_S_contig1398.3101.1|Name=mRNA_Ecto-sp13_S_contig1398.3101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=8874bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1398:2..8875- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTCGCCCGGTCTGACGCTTTCGATGTGCGTAGCTCTTGTCTCTCC
CTCCACCGGTTTCTTTGCAGGCGGCCCGACCCTGTTGACAAGGTGCGTTC
CGAGTAATCCAACGAACTCGATCACGTCAACATGTTTGAAGTTCTACAGA
TTGCATGTAGATACCCAGGAACGCGCCGTTGCGTTGCCGCCGGTATGCTT
GTGTGCACCCCCAGAGGCTTTACAGGCAGCACCATGCATTGCAATGGCCA
GTGCATGGGGCCTGGCAGGTGTTCGAGTGGGGGTGTGCGACAGCAGTATC
TGATAGACTGATAGTGTCCGTCAATAAATATCCACTTTTTCGGGAAGTTG
CGCGGGTGGCACATGCACACACATGTTACTGCTGTACGATACTAAGTAGA
ATGATCCCGCATGCTCTTCCCCTGCCTATGGAGAGGAGGTGCCGTGAGTT
ACCCGTTGGCCGCTCACCGTGAGACCTCAGGCGAACGCTGATTGGTGGAA
CAGTTTTTCACAAAGCAGGGGGTGTCGAGACAGCGCTGAACGAGTGTGTT
TCGGGAGGTGGCATCTGTGACAGCAGTCCAAGTTGTGTGTGTCTGATGTT
TCGCGTATGCCCACAAACAAGCCCTACTGTTGTTGCACTGTTGTATGCAT
AGGCTACCGCTGTGCTGTGTCTACGTTGCGGTCTAGATGTATATACATGA
ACATCGTTTCATACTTCTAGGTGAACGACACGATAAGGAATGGAGAAAAA
CCACGACGACAATGTGGATCGGTCGCGAGAACACGAATGCTTTCTTATTC
GACAAGCTAACCAGCTTGCTTTGAAGAGGACTGCTGCTGGTAATCACAGC
GGCAGCTGCTGCCTACGTGAAGCCTTGACAGGCCACGCGGCTTGTCTTCT
CTGTTTTCTCACGCCAGGCGACGTTTATCCCACCTTTGTACTCAGTTCCT
TCTCGCAGCAGGCACCAACAGCAGCATGGTCTCCCTCGCCTTTGAGAAAT
AAAAGTGGTGTGCATATGCATAGCCATGACAACGGCGTCGATCGTAGATT
GATGTGTCAGTAGAACAAAGATTGACGCTAAGCATGAACGTTCCAACGAA
GGCCTCTTCTTGCTTCGGGACGTGCGTAGATTTGATGTTGCCACAGAACA
AGAACAGACGCCACCCAACATTGTAATACTCGAGTATGCATGGACGTTTC
AACCAAGGCCCCTCCTTGCCTGTCGGAACGTGCGTCAAGCAGTAGAATGG
TCCCCGTCACACTTGACAACGACAAGTGATAGCAATAGCAATAGGAGCAG
CATTGATCGTAGATTGATGTGGTATGTATGTAGCAATAACAACGACCGTG
GCGTCGACCGTAGATTAGTGTGGCAGCAGAGCAACGACCCTAGGCGCCAC
CCAACATTCTACGTTTCAGCGAAGGCCTCGGAACGCGCGTCAAATCTCTC
GCAGCGCCACCAGTGGCGATGGGAAGACCCGGCGATCTCGCTCGCCGGTA
GCAACCCGCAGCCCGGGGTCCCCACCATCGGTGATGATGGCGACGGGGGG
GGGCTCCTTCTTCGACGGAATCGCCGAGTTTTTCGAGGACCTCCAGAAGG
GGATGGCCATGCCCCCGTCGGCGGCGTCCGTCGCCATGGCCAAGAAGGTG
CTGCTTCGCCCGATCAGTAACCTTTGCGAGGATACCTCTTCAATCTTGGT
TTTTGGTAGTGGTTAGGGTTGGAGTTGGGGTTACGAACCCCCGGTACCTA
ACTTGTAACGCTCGAAATTTCAAGAAGGTGCTTCGGGAGATCAGCAGCCT
TGGTGAGGGAGGATTGCAAGCCTGGTTTAATAGGGGTCGCGGGATTGGGT
TTGGGGTTTAGGTAGCTCGTTTTCGTTGCAATACCTGGCACCGTGTTTGA
AAGCCTCGGATTTTACCCTGCCGCTGTGTTGTACCATATACGCTACCGTT
CGAGCCCAGGATTTCGTTGAGTGTTGTATTGTCGTATCACTTCCTCAACA
CTCCTACCTGCAGGCAGCATGTCTCGTGAGAAATAAAAGGGGTGGAGCTC
GAACGTAAATAGTTGTGTGTGGGTCAGGATGCGTCATGAACCGGAAGCGG
CATGGATATAGAACAGGACTTGTTCTGGAAGAACATGATGGCCACCTAAC
CGTCTTGTTGGGCTTGCCACCCAAAGGGAAGATATCGCTACATATGTATG
CTGCCCGGGGAACCGTAGAATTACAAGGTGGTCATCATGGAACATTATCT
ACGGATGCACTGCTAACCTATCCCGGACCCTTTTCGGTGGAAGAGATGAA
ATAGTGATACTTTTGGTGGTAAAAAAAAATACAGGACTTCTTGGAACAGC
CGTGGATCCTAGGTGACCCTGCAGGCAAGGCTTTCCTTATTTGTCACCTC
TCCGCAACCAACTACCACTGCTGTGATTTCTTGCTGACTCGGTCACTCCT
TTGCCCCCCCCGCCGGAAACTTCTCGGAATCTTCCCCGGCTTTTTCGGGG
CGGGAAAATTTCTGAGAAATTCATTACTCCCGCCGCAAACGACCAAACAA
AACAAAAAAGGAAAAGGAGGAGCAGGAGGAGATGGCGTTCGAAGGAGTGT
GGGTGATGATGAACGGCCTTTCTGGCAAGATGGGTCTCGACGTGGCAGCG
GCGTGTCTACGGAAGGGCTTCCGCATAGCCCCGTACGCCATGTCAGGGTC
GGGTTCGGGCAAGGTCAGCGTCGCCGATCCTAAGGTGATGCTTGGGAAGT
GCATTTTTATTTTCTGAAGCGATTGAAGGTTTTCGTTAAATTTGTGTTGG
GATGCTAGGGATTCCATTTTCAGCTTGAATTTTCTGTTGTAGAACTTTCT
TGGTTACCGTGGCTTTCCGTAGTCATCTCAGAGACTTCTTGCGTGAACCT
TTTTTCTCAGCAGCGTTCGACGTTGACGCTCCCAAATGCGCCAAAGTAGA
GGCAGAGGGATGCCCAAAGGTTGATACAACTGTGATTTCGTCGCAGCTAC
TCTGGCCGCCAGTCTATCTATACCTTTCGGTACACGTTTGGTGCATGTGC
CTCGTGAAAAAAATAGCCCATTTAACCCTTTGTAGCTCTGTTAGGCAATG
ACTCTCAGCGCTACAGCTCAACTTTTTAGAGTATCTCATAAAATCGTAAT
TATTTGGCGAAAATTTCGTGTTTTTTTGCACTTAACCCCTCCGGCGTTGT
TGTGCTTTGAGACATGGAATAGCCAGGAGAAGATGGCTAGCTATACTGGG
CAGGTACAGAGAGACGTTTGAGGCATGGAACGACAGAAGACGGTAGCTAT
GGGTGTATGAAGCGCAAGTGATGTCAATAGGATAGAGGAAGCTTTTGAGC
GGCTTTTAGCAAGGTAGGAAGGAACGATTGACCATCGGTGATCGGTCCTA
TGGGAACAATGTTCCGTCCCCTCGAGGACGCGCGGTCAAAACATGCGTAC
CTCCCCCCCCCTCTTTTACCCGCTCCCCCAATTTCCGCGTAGACTTACAC
GAGGTAAAAGCAATACCTACGTAGGACGACGCTGCTGAGCCTAGTCCTAA
CCCCATCCCACACCCATACAACACAAAAAAGCAGCAGAAATAAAAAATGA
TTTTATACAAATTTTATTTATCTGGTAAGCTTGGGGTGCTAAAAGGGCGC
GTGAAAACTACTTGACGCTGCCCCCCCTAACGCTTACCCGCTCTCCGGAC
CCCCCCTCCCCGTATCGGAATTTCTCAAAGGGCGGGGACCCCACCACAGT
GACTCTTGTGCCCAGCGATGACGCGGAGGGGTGCGATAAGGCGGTGGCGG
AGTTGAAGAGGCGCTGCTCTGGTGGCTCTGTGGTGGTGGTGGACTACACC
ACCCCCTCCGCGGTGAACGCCAACGCGGAGTTCTACGCCAAGCACGGCCT
GAATTTCGTCATGGGGACCACTGGCGGCGACAGGTGTGGGCGTGGCGGGG
CTGTTCCTGATTGTTGTTGTGCGTGTTGTTGCTGCTGGAGCTGCCGATGA
CAATGATGATGATGATGATGATGATGATGATTATGGTTCTGTGTTGTTGC
TGCTGCTGATTCTGTTGCTGCTGCCGTTGGCGCTATTGCGTTTTGCGTGA
AAATGTTTCCTTGCCGTAGCTCCGTCTTCCCTGAGACTTGGATGGCGAGG
GAGACGAGTCGCAACTTTTTTTTCTTTTCCTTCTCCCATGCTTGATCTGA
GTATCGTTTACTTGAGAGGAAGGTCGAGCAGGAACGTTGCAGTATTGTTA
AAGGGCTCAATGGCTGCAAGAAATGGTGGCAGAAGGGGGGTTCCGGGGGA
GGAAACAAGACATATCGTACATAGTTTGCTCAAGATACCACATCCCCTGA
ACCGATTTTCAAAGCTCGATTTGCCAGCGACGAAAAGGACGTCAAAATCA
AGTGATCCGTTTACGGAAAGCCGTCGACGAGAGGGATCCAACGCCGACAA
TTATTTCGGCACCACCATTAATTTTCCTGTGGAATAATTGAGCTTCGAAA
ATCGGTCCAGGGGGTGTGATGTTTCACGCAACCTACCGTAGAGAGAACCA
GCTGAACGCCTTTACCATGCATGCGGACCTTGGAAAGTCTTGTTCAATGT
CATCGTTTGTGAGGTTTCATGCTAATGGTACAAGGAATGATGTGTATATT
TCTGTCTCCTCTCTTGCGGCAGGGATGCTCTCATGTCCGTGACGGAGGGG
AGCGGGGTGTACGCCGTCATCGCGCCTAACATGGGAAAGCAGATCGTCGC
TCTACAGGCAAAGACTCACTTTTTTTTTTCTTAATTGAAATGTCGACTTT
TTTCTTTTTCTTTCTTGAAAAGCCGACATTTCTTTTTTTGCTTTCTAGAA
ATGTCGACCAGGGTGGGATGGAGTAAACGTGTTGTGCCCAACAAGCTACT
TTTTGACTTTTTGCCTGTGAACACGGAAGGCGTCCGCGTCAGTTTAGAGT
GGTTTGGATGTGAAGAGGTGCTGAGCAGAGACCGGAATAGTTTTTATAAC
GTCAAAAACAATTACCATGGTACATGACAATAACGTCAATGCTTGGCACT
ATCGATCCGTAGCCCCTCTTGCCGGTGTCTATCAATTGACGCTGCTCATT
TTGCTTGATCACCGCGATCCACGACTCCGATGTACGACTCCGATATACGA
CTCCGATATACGACTCCGATCCACGACTCCGATCGACGGCCTGCTGCATC
ATGACCAATCACCAATCATCTACGATCTACGACAACACCGATACGCACGG
GCTTGGGATCTACCAGAGCGCGATTGACAACATGGCGAGAGAGTTCCCCG
GATCGTTCGCCGACTACAAGCTCGAGGTACGCAGGCCGTGCGCATGGGGT
GTGGTATGTTGAGAGCCAGATCGCACAAAGAAAAGCTTGGATCAATGTAT
GTATGTCTATACATAATTGCGACCCCTGTATGCACAATGAGAAGGCCGGT
CAGCTTGGTAAATTAACAATGAGAAGGCAATGATTTGTTGTTGTTGTGGG
ACCAGTGCATCATATATCGGAGTTCCACGAGTCATATTCATGTCTGTTTT
ACCCTTTCCACTGAGAAGACAGTTACTCTGTGCTGGTCGTCGAATGTTGC
AATCACCATATAACAGAGCCCCAACAGTCTTATTTAAGGCGTTGACACTA
TCATTTGTGTTGCCGGCGGTGCAATCAGATGACGGAGTCCCACCAGCTTC
TGTTCAAACCTTTGCATGAGCTGTAATTTTTTCTTTTTCTATTGTTGATC
GGTGCGGTGCATCCAGATAACGGAGTCCCACCAGTCCGCCAAGGTAGACA
CAAGCGGTACGGCGAAGGCACTGGCGGCTGACTTTGCCAAGCTGACGGCA
GAAGACTTCGACGTCAAATCCATCAACAAGGTGGGTTTTTGGTTTGGTTT
GGTTGACCGGGCTTCGTGAGACCAGGCGCCCTTGGTGGCCATCATTGCCG
TTTTGTGCGTGCGTGTATTGTTCGCGTGGACCGCGGTACAACCGGCTGAC
CAATGAAATGACGTCAGTCTTCGTGTCGCAGAAAATAGAAAATGGTTCTG
GAGGCCATCATTGCCGTGCGTGCGTGTCTTTATTGGTTGCATCGACCGCG
CTACATGCGGCTGACCAATGAAAACACGTCGGTCTTGGCGCGGTTGAAAG
TGCTTGTGAAGGCTACCATGACCCCGTGAGGGGGCGCCACGGGGAAAGCT
AGGCTATTCTCCGGATTAAAGACAGAAATGGAAGCAACAGAAGAATCTGC
ACTTGTCGTGTGAGCGTGTGTTTTAGTCCCTTGATGCTGGGCGTGGGTTT
TTGAAGGCAGCCCTTGATGCGTTGCGTGCGCTGAATTGGTGGTTGCGAAT
ACATCCACGATAAGGTTCGCGACACAGAGGGCCAACTGGCGTTTGGAGTG
CCGGAGGAGCACCTGGCTGGACACGCTTTCCACACGTACAGCCTCAAGAG
CAACGATGGAACGTGAGTACATGGTGGAAGGGACGAACTCGATTTTTTCT
ATGTTGGAACGACGACATGGTGGACGAATATCTATATATATTTTGTGAAA
AGGCAAAGCCAGTTTACGAAGGGGAGATATGTATCGCTTGTCCTTCTTTC
CGATCGAAAGTCAACCGTCTTATTGCTAGGGTCGAGTTTCACTTACGACA
ACACGTGTGTAGACGGCTGATGTACGCGCATTCCGCTCGAATATTGGGCG
GATTCTTGTCGTTCTTTTCCGATCGAAATCAACTTCGACAGGGTCGAGTT
TCAGTTCAGACACAACGTATGCGGCCGGCTGATGTACGCGGAAGGCACGG
CGGACGCGGTGGAATTCTTAGCGGGGAAGGCGGGGTCCGGGGCCGACAAG
CGCGTGTACAACATGCTCGACGTGCTTCGGGAAGGGGGCATGTAATGCCG
TGCCATGTCATGTCATGTGTCGTGCGATGACGTTGGCAAGGACAAAAACA
GCAGATCTATGTAGTTCTTTTTACGGAAGATACGATGCATGGTCATTGTC
CCGTCTTGTGATGACGTTGGCGAGGCAAAACAGCAGGGCTGGTTCTGATC
TTGGACACCATGCATGGTCATGTCCTGTCGTGTGATGACGTTGGCAAAGC
AAGACGAGACATTAGTTATTACGGAAGATACCCGGCCCTTGTGGACGACT
TCCTACCTTCATCCCTATTTGGGTTCGGTAGGTGTGGGGGGGGTATGTAG
TATTGATCCTGCGGGGCCTTGCAACTGACGCCATCAGGGAAAGGTACCGC
GTCCGCCTTTCCCAACGATTTCGAGCATGTCGGTCGCTCTTCGCCTTCAT
GACAACAAGCGGGATGCCGGGGGCTCCGCGGTCAGCACTTGGGGTACACG
GGGGTACTCTGGCGTGACCCTTAGCTCGACGCCCCGTTCCTTGGATTGTT
CTTTTTGTTACCCTTTTGTCCCCCCACCCCCCTACTTTTAGATTGACGTG
TTAAGTTAGTTGAGCGAATATCGAAAGAGGTGCCGTCGTGTTTTCGGGGT
GGCTGTTCTTTCTTTGACTGCTTGTTGAGGTTCTGGGACGCGTTTGTTTT
CCCCTTCATGTGGTGAACTTTAGACCGCTCCTTCCTGAAGAAAGCGGGGA
CGAGCTACAGGCGTGGTGGATGTTGTCAGTAGCTTGCAGGCTGTTCATCG
AGGAGGCTTGGATCATACACACACACACCCTCGGGACGACAAGTCGCATG
CGTATCCCTTAGAGCACCCGCGAGATCTGTTAGAGCAGCATGCCGAGGAG
GGTGCCGCCTGCAGAGAGAGGAATATCCTCGGGGTGGGGTCTTCCCGTTG
GTTTTATTTGCGAACCATACCTTTAAAGCTCCGGTTCCCTTTCGTTGCAA
CTTGAGAGACTGGGATGGTCTCTTGCCATCATGGAGCTGTCGAGTGGTAT
GATTGGTGGACGTTGACACCTAACCTTTCGGTGATTTTTGTTTGTCTTCG
AAACAAAGGAAGCAATGTTAGAACCTTGGGTTTCGGGGTTGATGGCATGA
TGCGCGCTTAGAAACGATCTCCACGGGGGTTGTCGACGGCCACTGCTGTG
CGGGAGGGCGGCGTAGACTAGATCCACGCAACATTCTCTGTATTGCCTCA
GCGCTCACTGCTTTTGACATGCGTAGGAGGTCTGCTCCAGGAATACAGTT
AGGCTACACTGCTTTTCGAGAGGATGAAACTTTGGAATTGAGGGAGGGTT
AAAGCGAGCACTTTGGAGAGGTGGGGGGAGGCAGGCAGGACAAGACGTGT
TTTGTTCGAAAAGAAGCTAGGTTAGCATAGTCTATTCATTTTTTAGTCAT
CATGATGACACCTAAAGACGAGCAATATACATCTAAGGTGAGGCCGGGGA
AACAACAATTCTCCGCGGCAACGGCTGTACAGGTTGTGGTACGCAGAGGA
GAATCTTGTTGACGCCTCGGGAGGATCAACCCCTCTGGAACTAAAGATGA
TTGTGTGGGCCTTTTAGACGCACCTGCTACACCACCACTATGCGTTGACC
TTCCAGAGAAATTACTTTTTTCTGTGCCGATGAGCGGTTTTTTTTTGGGG
GGGGGGGCACCTGTTGTGCGTGCCACTTTTTCATTATTTGGGATTCGGTC
TTTTTCTTGCCCTCGTAGTGTACTTTACCGTGGGGACTCAATGGTTGCTA
CCATTCGACGGGCACAGCATGGGGCTTTGTCAACCCATTCAAAGGGTAAA
TCGAAGGGGGGAATTTTGGCTTTGAGGTGAATCGTTTTCCCTCGTATTTT
GTCTCTTTTGGGATTCAAGTGTTTTTTGCAGGTACGTCATGTATCGGCAT
TGATTGGTGGCGTACACCGGCTGAAGACCTCGCTTTCGAGCACTTTCTCT
TGGGAGTTAAACATGCCATCAAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1398:2..8875-

>mRNA_Ecto-sp13_S_contig1398.3101.1 ID=mRNA_Ecto-sp13_S_contig1398.3101.1|Name=mRNA_Ecto-sp13_S_contig1398.3101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1173bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1398:2..8875- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTCGCCCGGTCTGACGCTTTCGATGTGCGTAGCTCTTGTCTCTCC
CTCCACCGGTTTCTTTGCAGGCGGCCCGACCCTGTTGACAAGCGCCACCA
GTGGCGATGGGAAGACCCGGCGATCTCGCTCGCCGGTAGCAACCCGCAGC
CCGGGGTCCCCACCATCGGTGATGATGGCGACGGGGGGGGGCTCCTTCTT
CGACGGAATCGCCGAGTTTTTCGAGGACCTCCAGAAGGGGATGGCCATGC
CCCCGTCGGCGGCGTCCGTCGCCATGGCCAAGAAGGAAAAGGAGGAGCAG
GAGGAGATGGCGTTCGAAGGAGTGTGGGTGATGATGAACGGCCTTTCTGG
CAAGATGGGTCTCGACGTGGCAGCGGCGTGTCTACGGAAGGGCTTCCGCA
TAGCCCCGTACGCCATGTCAGGGTCGGGTTCGGGCAAGGTCAGCGTCGCC
GATCCTAAGGGCGGGGACCCCACCACAGTGACTCTTGTGCCCAGCGATGA
CGCGGAGGGGTGCGATAAGGCGGTGGCGGAGTTGAAGAGGCGCTGCTCTG
GTGGCTCTGTGGTGGTGGTGGACTACACCACCCCCTCCGCGGTGAACGCC
AACGCGGAGTTCTACGCCAAGCACGGCCTGAATTTCGTCATGGGGACCAC
TGGCGGCGACAGGGATGCTCTCATGTCCGTGACGGAGGGGAGCGGGGTGT
ACGCCGTCATCGCGCCTAACATGGGAAAGCAGATCGTCGCTCTACAGAGC
GCGATTGACAACATGGCGAGAGAGTTCCCCGGATCGTTCGCCGACTACAA
GCTCGAGATAACGGAGTCCCACCAGTCCGCCAAGGTAGACACAAGCGGTA
CGGCGAAGGCACTGGCGGCTGACTTTGCCAAGCTGACGGCAGAAGACTTC
GACGTCAAATCCATCAACAAGGTTCGCGACACAGAGGGCCAACTGGCGTT
TGGAGTGCCGGAGGAGCACCTGGCTGGACACGCTTTCCACACGTACAGCC
TCAAGAGCAACGATGGAACGGTCGAGTTTCAGTTCAGACACAACGTATGC
GGCCGGCTGATGTACGCGGAAGGCACGGCGGACGCGGTGGAATTCTTAGC
GGGGAAGGCGGGGTCCGGGGCCGACAAGCGCGTGTACAACATGCTCGACG
TGCTTCGGGAAGGGGGCATGTAA
back to top