mRNA_Ecto-sp13_S_contig10012.31.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10012.31.1
Unique NamemRNA_Ecto-sp13_S_contig10012.31.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A6H5JP59_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP59_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 6.160e-16
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 1 
Query:    7 QALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV 120
            +ALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV
Sbjct:  558 EALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV 595
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: D8LTA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTA1_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 2.050e-15
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 1 
Query:    7 QALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV 120
            +ALFGMGYMHQMGKGVPQD FLAKRYFDQAALVSSDAV
Sbjct:  381 EALFGMGYMHQMGKGVPQDFFLAKRYFDQAALVSSDAV 418
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A1D1W2R9_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1W2R9_RAMVA)

HSP 1 Score: 53.5 bits (127), Expect = 4.060e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117
            S QALF +GYMHQ G GV QDL LAKR++D+A   S+DA
Sbjct:  555 SPQALFNLGYMHQQGLGVKQDLHLAKRFYDRALETSADA 593
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A2A6C177_PRIPA (Mrps-5 n=2 Tax=Pristionchus pacificus TaxID=54126 RepID=A0A2A6C177_PRIPA)

HSP 1 Score: 53.1 bits (126), Expect = 5.540e-7
Identity = 23/40 (57.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:    1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV 120
            + QA+F +GYMH+ G+G+ QDL+LAKRY+D A   S DAV
Sbjct:  682 TAQAMFNLGYMHERGEGMTQDLYLAKRYYDSAMEHSPDAV 721
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A4W3ITR0_CALMI (Fibronectin type-II domain-containing protein n=7 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3ITR0_CALMI)

HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117
            S QA+F +GYMH+ G G+ QD++LAKR++D AA  S DA
Sbjct:  674 SAQAMFNLGYMHEKGLGIKQDIYLAKRFYDMAAETSPDA 712
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: UPI00140265A9 (protein sel-1 homolog 1 isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI00140265A9)

HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117
            S QA+F +GYMH+ G G+ QD++LAKR++D AA  S DA
Sbjct:  665 SAQAMFNLGYMHEKGLGIKQDIYLAKRFYDMAAETSPDA 703
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A401S1C2_CHIPU (Fibronectin type-II domain-containing protein n=7 Tax=Galeoidea TaxID=119195 RepID=A0A401S1C2_CHIPU)

HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117
            S QA+F +GYMH+ G G+ QD++LAKR++D AA  S DA
Sbjct:  649 SAQAMFNLGYMHEKGLGIKQDIYLAKRFYDMAAETSPDA 687
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A4W3IWM0_CALMI (Fibronectin type-II domain-containing protein n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3IWM0_CALMI)

HSP 1 Score: 53.1 bits (126), Expect = 5.550e-7
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117
            S QA+F +GYMH+ G G+ QD++LAKR++D AA  S DA
Sbjct:  639 SAQAMFNLGYMHEKGLGIKQDIYLAKRFYDMAAETSPDA 677
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A1W0WTG4_HYPDU (Protein sel-1-like protein 1 n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WTG4_HYPDU)

HSP 1 Score: 53.1 bits (126), Expect = 5.560e-7
Identity = 25/39 (64.10%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 SVQALFGMGYMHQMGKGVPQDLFLAKRYFDQAALVSSDA 117
            S QALF +GYMHQ G GV QDL LAKR++D+A   S+DA
Sbjct:  548 SPQALFNLGYMHQRGYGVKQDLHLAKRFYDRALETSADA 586
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BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Match: A0A152A3B0_9MYCE (Uncharacterized protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A152A3B0_9MYCE)

HSP 1 Score: 52.4 bits (124), Expect = 1.040e-6
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   10 ALFGMGYMHQMGKGVPQDLFLAKRYFDQA 96
            ALF +GYMHQ GKG PQDLFLAKRY+D +
Sbjct:  696 ALFNLGYMHQFGKGRPQDLFLAKRYYDMS 724
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10012.31.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JP59_9PHAE6.160e-1697.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTA1_ECTSI2.050e-1594.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1D1W2R9_RAMVA4.060e-764.10Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A2A6C177_PRIPA5.540e-757.50Mrps-5 n=2 Tax=Pristionchus pacificus TaxID=54126 ... [more]
A0A4W3ITR0_CALMI5.550e-756.41Fibronectin type-II domain-containing protein n=7 ... [more]
UPI00140265A95.550e-756.41protein sel-1 homolog 1 isoform X1 n=2 Tax=Amblyra... [more]
A0A401S1C2_CHIPU5.550e-756.41Fibronectin type-II domain-containing protein n=7 ... [more]
A0A4W3IWM0_CALMI5.550e-756.41Fibronectin type-II domain-containing protein n=2 ... [more]
A0A1W0WTG4_HYPDU5.560e-764.10Protein sel-1-like protein 1 n=1 Tax=Hypsibius duj... [more]
A0A152A3B0_9MYCE1.040e-675.86Uncharacterized protein n=1 Tax=Tieghemostelium la... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10012contigEcto-sp13_S_contig10012:278..400 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.9
Seed ortholog evalue5.1e-10
Seed eggNOG ortholog2880.D8LTA1
Model size123
KEGG koko:K14026
KEGG Pathwayko04141,map04141
KEGG ModuleM00403
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.ERAD pathway
EggNOG OGsCOG0790@1,KOG1550@2759
Cds size102
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462500.5826461-CDS-Ecto-sp13_S_contig10012:277..3791681462500.5826461-CDS-Ecto-sp13_S_contig10012:277..379Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10012 278..379 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462500.6024086-UTR-Ecto-sp13_S_contig10012:379..4001681462500.6024086-UTR-Ecto-sp13_S_contig10012:379..400Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig10012 380..400 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10012.31.1prot_Ecto-sp13_S_contig10012.31.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10012 278..379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10012.31.1

>prot_Ecto-sp13_S_contig10012.31.1 ID=prot_Ecto-sp13_S_contig10012.31.1|Name=mRNA_Ecto-sp13_S_contig10012.31.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
MGYMHQMGKGVPQDLFLAKRYFDQAALVSSDAV*
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mRNA from alignment at Ecto-sp13_S_contig10012:278..400-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10012.31.1 ID=mRNA_Ecto-sp13_S_contig10012.31.1|Name=mRNA_Ecto-sp13_S_contig10012.31.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=123bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10012:278..400- (Ectocarpus species13 EcNAP12_S_4_19m)
TCCGTGCAGGCGCTCTTCGGTATGGGTTACATGCACCAGATGGGCAAGGG
GGTGCCGCAGGATCTCTTCCTGGCCAAACGTTACTTCGACCAGGCCGCGT
TAGTCAGCTCGGACGCAGTGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10012:278..400-

>mRNA_Ecto-sp13_S_contig10012.31.1 ID=mRNA_Ecto-sp13_S_contig10012.31.1|Name=mRNA_Ecto-sp13_S_contig10012.31.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10012:278..400- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGTTACATGCACCAGATGGGCAAGGGGGTGCCGCAGGATCTCTTCCT
GGCCAAACGTTACTTCGACCAGGCCGCGTTAGTCAGCTCGGACGCAGTGT
GA
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