prot_Ecto-sp13_S_contig13975.3098.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig13975.3098.1
Unique Nameprot_Ecto-sp13_S_contig13975.3098.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length85
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13975.3098.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.170e-44
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 0 
Query:    1 MLVKGHIPKLSLGVSNQLLPLMQVPGMSRTEASALFREGIVNAKSLLSASSDRVATALRINVPFRTATKGGRGKDRGAGECFRFE 85
            MLVKGHIPKLSLGVSNQLLPLMQVPGMSRTEASALF+EGIVNAKSLLSASSDRVATALRINVPFRTATKGGRGKDRGAG CFRFE
Sbjct:  926 MLVKGHIPKLSLGVSNQLLPLMQVPGMSRTEASALFQEGIVNAKSLLSASSDRVATALRINVPFRTATKGGRGKDRGAGGCFRFE 1010
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BLAST of mRNA_Ecto-sp13_S_contig13975.3098.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.170e-29
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0 
Query:   15 SNQLLPLMQVPGMSRTEASALFREGIVNAKSLLSASSDRVATALRINVPFRTATKGGRGKDRGAGECFRFE 85
            S  +   ++VPGMSRTEASALF+EGIVNAKSLLSASSDRVATALRINVPFR+ATK GRGKDRGAGECFRFE
Sbjct:  823 SGMVASFLKVPGMSRTEASALFQEGIVNAKSLLSASSDRVATALRINVPFRSATKEGRGKDRGAGECFRFE 893
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13975.3098.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM15_ECTSI5.170e-4497.65DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L306_9PHAE9.170e-2984.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSUPERFAMILY158702Sec63 N-terminal domain-likecoord: 9..55

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13975contigEcto-sp13_S_contig13975:2032..2908 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13975.3098.1mRNA_Ecto-sp13_S_contig13975.3098.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig13975 2032..2908 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig13975.3098.1 ID=prot_Ecto-sp13_S_contig13975.3098.1|Name=mRNA_Ecto-sp13_S_contig13975.3098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MLVKGHIPKLSLGVSNQLLPLMQVPGMSRTEASALFREGIVNAKSLLSAS
SDRVATALRINVPFRTATKGGRGKDRGAGECFRFE
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