mRNA_Ecto-sp13_S_contig13975.3098.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig13975.3098.1
Unique NamemRNA_Ecto-sp13_S_contig13975.3098.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig13975.3098.1 vs. uniprot
Match: D7FM15_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM15_ECTSI)

HSP 1 Score: 160 bits (406), Expect = 5.170e-44
Identity = 83/85 (97.65%), Postives = 84/85 (98.82%), Query Frame = 1 
Query:    1 MLVKGHIPKLSLGVSNQLLPLMQVPGMSRTEASALFREGIVNAKSLLSASSDRVATALRINVPFRTATKGGRGKDRGAGECFRFE 255
            MLVKGHIPKLSLGVSNQLLPLMQVPGMSRTEASALF+EGIVNAKSLLSASSDRVATALRINVPFRTATKGGRGKDRGAG CFRFE
Sbjct:  926 MLVKGHIPKLSLGVSNQLLPLMQVPGMSRTEASALFQEGIVNAKSLLSASSDRVATALRINVPFRTATKGGRGKDRGAGGCFRFE 1010
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BLAST of mRNA_Ecto-sp13_S_contig13975.3098.1 vs. uniprot
Match: A0A6H5L306_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L306_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 9.170e-29
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 1 
Query:   43 SNQLLPLMQVPGMSRTEASALFREGIVNAKSLLSASSDRVATALRINVPFRTATKGGRGKDRGAGECFRFE 255
            S  +   ++VPGMSRTEASALF+EGIVNAKSLLSASSDRVATALRINVPFR+ATK GRGKDRGAGECFRFE
Sbjct:  823 SGMVASFLKVPGMSRTEASALFQEGIVNAKSLLSASSDRVATALRINVPFRSATKEGRGKDRGAGECFRFE 893
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig13975.3098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM15_ECTSI5.170e-4497.65DEAD box helicase n=1 Tax=Ectocarpus siliculosus T... [more]
A0A6H5L306_9PHAE9.170e-2984.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig13975contigEcto-sp13_S_contig13975:2032..2908 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score160.6
Seed ortholog evalue3.2e-37
Seed eggNOG ortholog2880.D7FM15
Model size257
KEGG koko:K02349
Hectar predicted targeting categoryother localisation
GOsGO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006287,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0033554,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:1901360
Exons3
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
Cds size255
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462745.7168968-CDS-Ecto-sp13_S_contig13975:2031..20631681462745.7168968-CDS-Ecto-sp13_S_contig13975:2031..2063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13975 2032..2063 -
1681462745.7288485-CDS-Ecto-sp13_S_contig13975:2385..25391681462745.7288485-CDS-Ecto-sp13_S_contig13975:2385..2539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13975 2386..2539 -
1681462745.7390544-CDS-Ecto-sp13_S_contig13975:2839..29081681462745.7390544-CDS-Ecto-sp13_S_contig13975:2839..2908Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig13975 2840..2908 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig13975.3098.1prot_Ecto-sp13_S_contig13975.3098.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig13975 2032..2908 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig13975.3098.1

>prot_Ecto-sp13_S_contig13975.3098.1 ID=prot_Ecto-sp13_S_contig13975.3098.1|Name=mRNA_Ecto-sp13_S_contig13975.3098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=85bp
MLVKGHIPKLSLGVSNQLLPLMQVPGMSRTEASALFREGIVNAKSLLSAS
SDRVATALRINVPFRTATKGGRGKDRGAGECFRFE
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mRNA from alignment at Ecto-sp13_S_contig13975:2032..2908-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig13975.3098.1 ID=mRNA_Ecto-sp13_S_contig13975.3098.1|Name=mRNA_Ecto-sp13_S_contig13975.3098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=877bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13975:2032..2908- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGTCAAGGGACATATACCGAAGCTGAGCTTGGGCGTCAGCAACCA
ACTTCTACCCCTTATGCAGGTGGAGTAACATTGTCGTCTTGAAGCGGTTG
TTGTCGCGGTATCCTTGCAGGCACTCCTTCACTTCCCCGACACCCTCAAG
CGTTCGCGCCGCGCCACATGCATTTGTGCTTTGTTTCAATCTTCGGTATG
CTGTGACATTTCCCTTCTTGCATGAAGTTTTAAGCGTTCGCGCGCCTTTG
ATTTTTCAGTTGAGATTTATTGTCCAATAGGCTTACTCCCGGCGGGCTAA
ATACCTGCACGGCGGCGGTCAACTGCTGTGTGCGTGCACATGTTCTGCTG
TTGGTCTGCTGTGTTCCAGGTCCCAGGCATGTCTCGGACGGAAGCCAGCG
CCCTGTTCCGGGAAGGCATCGTCAACGCCAAGAGCCTGCTGTCGGCTTCT
AGCGACAGGGTGGCCACGGCCCTCAGGATCAACGTGCCGTTCCGCACTGC
CACGAAAGGGGGGAGGGGTAAAGGTACGGCGGCAGTATGTCACAGTCTCG
AAATGGTGTGGTTTGAAGAGAAGGAGAGGAGGGGGGGGGGCACGAATTCG
CAAGGTTTCCAGCGTAAATTGCGTAGATAGCAGTGGCATGGCTAGCAAGG
AGACGAAGAGTGGCAGCGGGTTCGAAAATAGGATCAGACCCCACCCACAC
GAATTATGTACCAGACGTTTTGTGATCGACCGAGCTGGTAGACTAAATTA
CTCCGCCAGCACTGACCTACGGCTTCATTCTCTCCCACTCTTACCCCAAC
CCCCCTTCCCCCCCGTCGCTCTGTGATGCATTTTTTTTTCGACAGACCGA
GGCGCGGGGGAGTGCTTCCGCTTCGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig13975:2032..2908-

>mRNA_Ecto-sp13_S_contig13975.3098.1 ID=mRNA_Ecto-sp13_S_contig13975.3098.1|Name=mRNA_Ecto-sp13_S_contig13975.3098.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=255bp|location=Sequence derived from alignment at Ecto-sp13_S_contig13975:2032..2908- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTGGTCAAGGGACATATACCGAAGCTGAGCTTGGGCGTCAGCAACCA
ACTTCTACCCCTTATGCAGGTCCCAGGCATGTCTCGGACGGAAGCCAGCG
CCCTGTTCCGGGAAGGCATCGTCAACGCCAAGAGCCTGCTGTCGGCTTCT
AGCGACAGGGTGGCCACGGCCCTCAGGATCAACGTGCCGTTCCGCACTGC
CACGAAAGGGGGGAGGGGTAAAGACCGAGGCGCGGGGGAGTGCTTCCGCT
TCGAG
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